Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

22423485 .. 22427190

Gene Structure 3706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGGAGGGCACGCAAAGGCCCTAAGTTCGCAGTCATGAAGAAGGTGGTTACCTCCAAAGCAATTAAAAGCTACAAAGAGGAGGTTCTGAACCCAAACAAGAAAGATCTCACCAAAGAAAAGCTACCAAGAAATGTGCCAAATGTTTCGTCGGCGCTTTTCTTCAAATACAACACTGCTTTGGGGCCGCCTTACCGGGTTTTGGTCGATACTAACTTCATCAATTTCTCTATTCAGAATAAGTTGGATTTGGAGAAGGCAATGATGGATTGCCTATACGCAAAGTGCACTCCTTGTATCACGGATTGTGTAATGGCAGAGCTTGAGAAGTTAGGTCAGAAATATCGTGTGGCTCTGAGGATTGCCAAGGATCCTCGTTTTGAGAGACTACCCTGCACTCATAAAGGAACCTACGCTGATGACTGTCTCGTTGAAAGGGTTACTCAGCACAAATGCTACATTGTTGCTACATGCGATCGAGATTTAAAGCGAAGGATCCGAAAGATCCCTGGTGTGCCAATCATGTACATCACTCAACACAAGTATTCAATTGAGCGGTTGCCAGAAGCAACAATTGGTGGAGCTCCAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

199

Amino Acids

22.7

Weight (kDa)

9.68

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	556
AciI	CCGC	2 cut(s)	188, 556
AclWI	GGATC	5 cut(s)	365, 378, 490, 499, 503
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	166, 434, 549
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	558, 590
AluBI	AGCT	4 cut(s)	72, 124, 322, 584
AluI	AGCT	4 cut(s)	72, 124, 322, 584
Alw21I	GWGCWC	2 cut(s)	290, 586
Alw26I	GTCTC	2 cut(s)	379, 431
Alw44I	GTGCAC	1 cut(s)	286
AlwI	GGATC	5 cut(s)	365, 378, 490, 499, 503
AoxI	GGCC	2 cut(s)	19, 185
ApaLI	GTGCAC	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	20, 185
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	103
BaeGI	GKGCMC	2 cut(s)	13, 290
BamHI	GGATCC	2 cut(s)	370, 495
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	2 cut(s)	290, 586
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	379, 431
BfoI	RGCGCY	1 cut(s)	158
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	197, 510
BmgT120I	GGNCC	2 cut(s)	20, 185
BmiI	GGNNCC	4 cut(s)	186, 372, 409, 497
BmrFI	CCNGG	2 cut(s)	197, 510
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	366, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	366, 508
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	347, 458
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	2 cut(s)	13, 290
BsgI	GTGCAG	1 cut(s)	379
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	2 cut(s)	21, 187
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	2 cut(s)	290, 586
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	2 cut(s)	379, 431
BsnI	GGCC	2 cut(s)	21, 187
Bsp1286I	GDGCHC	3 cut(s)	13, 290, 586
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	5 cut(s)	106, 370, 475, 495, 504
BspACI	CCGC	2 cut(s)	188, 556
BspANI	GGCC	2 cut(s)	21, 187
BspCNI	CTCAG	2 cut(s)	348, 457
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	186, 372, 409, 497
BspPI	GGATC	5 cut(s)	365, 378, 490, 499, 503
BsrBI	CCGCTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	366, 508
BssMI	GATC	5 cut(s)	106, 370, 475, 495, 504
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	24, 356, 444
BstEII	GGTNACC	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	5 cut(s)	109, 373, 478, 498, 507
BstMAI	GTCTC	2 cut(s)	379, 431
BstMBI	GATC	5 cut(s)	106, 370, 475, 495, 504
BstMCI	CGRYCG	1 cut(s)	478
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	474
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	195, 508
BstSLI	GKGCMC	2 cut(s)	13, 290
BstX2I	RGATCY	4 cut(s)	106, 370, 495, 504
BstYI	RGATCY	4 cut(s)	106, 370, 495, 504
BsuRI	GGCC	2 cut(s)	21, 187
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	20, 185
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	3 cut(s)	37, 471, 523
CviJI	RGCY	7 cut(s)	21, 72, 124, 187, 322, 353, 584
CviKI_1	RGCY	7 cut(s)	21, 72, 124, 187, 322, 353, 584
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	3 cut(s)	24, 356, 444
DpnI	GATC	5 cut(s)	108, 372, 477, 497, 506
DpnII	GATC	5 cut(s)	106, 370, 475, 495, 504
DraI	TTTAAA	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	40, 474, 526
FaiI	YATR	5 cut(s)	38, 277, 402, 472, 524
FatI	CATG	3 cut(s)	36, 470, 522
Fnu4HI	GCNGC	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	21, 187
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	40, 474, 526
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	5 cut(s)	90, 237, 339, 357, 500
Hpy188III	TCNNGA	2 cut(s)	37, 479
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	37, 250, 486
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	2 cut(s)	288, 396
HpyF3I	CTNAG	3 cut(s)	24, 356, 444
Hsp92II	CATG	3 cut(s)	40, 474, 526
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	5 cut(s)	106, 370, 475, 495, 504
LmnI	GCTCC	2 cut(s)	581, 589
LpnPI	CCDG	5 cut(s)	209, 406, 495, 522, 576
MaeIII	GTNAC	2 cut(s)	49, 439
MalI	GATC	5 cut(s)	108, 372, 477, 497, 506
MbiI	CCGCTC	1 cut(s)	556
MboI	GATC	5 cut(s)	106, 370, 475, 495, 504
MboII	GAAGA	2 cut(s)	52, 154
MfeI	CAATTG	2 cut(s)	549, 573
MflI	RGATCY	4 cut(s)	106, 370, 495, 504
MhlI	GDGCHC	3 cut(s)	13, 290, 586
MluCI	AATT	4 cut(s)	63, 223, 549, 573
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	64, 73, 76, 351, 384
MseI	TTAA	2 cut(s)	66, 485
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	197, 510
MunI	CAATTG	2 cut(s)	549, 573
MvaI	CCWGG	1 cut(s)	510
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	5 cut(s)	106, 370, 475, 495, 504
NlaIII	CATG	3 cut(s)	40, 474, 526
NlaIV	GGNNCC	4 cut(s)	186, 372, 409, 497
NspI	RCATGY	1 cut(s)	474
PagI	TCATGA	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	189
Ple19I	CGATCG	1 cut(s)	478
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	508
PspEI	GGTNACC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	4 cut(s)	186, 372, 409, 497
PspPI	GGNCC	2 cut(s)	20, 185
PsuI	RGATCY	4 cut(s)	106, 370, 495, 504
PvuI	CGATCG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	2 cut(s)	66, 485
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	5 cut(s)	106, 370, 475, 495, 504
Sau96I	GGNCC	2 cut(s)	20, 185
ScrFI	CCNGG	2 cut(s)	197, 510
SduI	GDGCHC	3 cut(s)	13, 290, 586
SetI	ASST	9 cut(s)	48, 56, 74, 87, 126, 324, 337, 413, 586
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	63, 223, 549, 573
SsiI	CCGC	2 cut(s)	188, 556
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	195, 508
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	2 cut(s)	207, 478
TasI	AATT	4 cut(s)	63, 223, 549, 573
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	66, 485
Tru9I	TTAA	2 cut(s)	66, 485
TscAI	CASTG	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	53, 208
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	286
XceI	RCATGY	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.