Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

36489029 .. 36491465

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGCCAGGCCGGCCTCACCCTCACCGCGCCGCTCCTCTCTCCTCCTCCTCCTCCGTCGTCCGATCAACCCCACTTGAACGTCACCATCCACGACGACGACGACAACGGCAACGGCAGCTTCCGCAACCCGTTTGCTTTTCTCGGGTCGGGCGGGTTTAAGGTGCCCGTATCGAAGACGGCGGATCCGTTCAAGAACCATACTTTGAAAATCGGAGGGGTTTACGAGTGGTTAAAGATCGGGGTTTGCTTCCCCATCGCGATTTTGAGGCTTGTGATCTTTGGGGTTTCGTTGCTGATTGGGAGAGGAAGAAGCAATCGAGATTGGGTTGAGAGGTGGCGGTGGGAGTGGGGTGGTGGTGGAGGAATTGCGGTTGAGAATCCAATCGGTGGCTTTGAGAGCGGAGTTGCTGCCGGTGGCGGCGAGGTCAGTGGGGAAGCCCATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0050200 GO:0071617 GO:0071618 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase EF-hand_1 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

150

Amino Acids

15.72

Weight (kDa)

6.04

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	163
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccBSI	CCGCTC	2 cut(s)	34, 402
AccII	CGCG	2 cut(s)	29, 260
AciI	CCGC	9 cut(s)	27, 32, 124, 153, 182, 340, 371, 402, 420
AclWI	GGATC	2 cut(s)	179, 192
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	79, 193, 208
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
AlwI	GGATC	2 cut(s)	179, 192
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	4, 9, 13
ApeKI	GCWGC	2 cut(s)	117, 410
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	10, 16, 76
AvaI	CYCGRG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	129, 397
BccI	CCATC	2 cut(s)	95, 263
BceAI	ACGGC	3 cut(s)	124, 130, 195
BciT130I	CCWGG	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	4 cut(s)	32, 118, 411, 421
BlsI	GCNGC	4 cut(s)	33, 119, 412, 422
Bme1390I	CCNGG	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	165, 186
BmrFI	CCNGG	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	2 cut(s)	11, 413
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseRI	GAGGAG	5 cut(s)	26, 33, 36, 39, 42
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	129, 397
Bsh1236I	CGCG	2 cut(s)	29, 260
BshFI	GGCC	3 cut(s)	6, 11, 15
BshNI	GGYRCC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	12, 414
BslI	CCNNNNNNNGG	1 cut(s)	389
BsnI	GGCC	3 cut(s)	6, 11, 15
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	64, 184, 237, 276
Bsp68I	TCGCGA	1 cut(s)	260
BspACI	CCGC	9 cut(s)	27, 32, 124, 153, 182, 340, 371, 402, 420
BspANI	GGCC	3 cut(s)	6, 11, 15
BspFNI	CGCG	2 cut(s)	29, 260
BspLI	GGNNCC	2 cut(s)	165, 186
BspPI	GGATC	2 cut(s)	179, 192
BspT107I	GGYRCC	1 cut(s)	163
BsrBI	CCGCTC	2 cut(s)	34, 402
BsrFI	RCCGGY	2 cut(s)	11, 413
BssAI	RCCGGY	2 cut(s)	11, 413
BssMI	GATC	4 cut(s)	64, 184, 237, 276
Bst2UI	CCWGG	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	2 cut(s)	29, 260
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	4 cut(s)	67, 187, 240, 279
BstMBI	GATC	4 cut(s)	64, 184, 237, 276
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 117, 123, 399
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	2 cut(s)	29, 260
BstV1I	GCAGC	2 cut(s)	129, 397
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	6, 11, 15
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	436
BtuMI	TCGCGA	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	2 cut(s)	11, 413
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	7 cut(s)	6, 11, 15, 120, 271, 393, 440
CviKI_1	RGCY	7 cut(s)	6, 11, 15, 120, 271, 393, 440
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	4 cut(s)	66, 186, 239, 278
DpnII	GATC	4 cut(s)	64, 184, 237, 276
EciI	GGCGGA	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	446
FaiI	YATR	2 cut(s)	201, 444
FatI	CATG	1 cut(s)	442
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	4 cut(s)	32, 118, 411, 421
FokI	GGATG	1 cut(s)	74
FseI	GGCCGGCC	1 cut(s)	15
Fsp4HI	GCNGC	4 cut(s)	32, 118, 411, 421
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	4 cut(s)	32, 118, 411, 421
HaeIII	GGCC	3 cut(s)	6, 11, 15
HapII	CCGG	2 cut(s)	12, 414
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	12, 414
HphI	GGTGA	3 cut(s)	10, 16, 76
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	64, 215
Hpy188III	TCNNGA	3 cut(s)	193, 259, 320
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	4 cut(s)	61, 98, 101, 104
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 117, 123, 399
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	446
HspAI	GCGC	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	64, 184, 237, 276
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	3 cut(s)	20, 25, 427
Lsp1109I	GCAGC	2 cut(s)	129, 397
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	66, 186, 239, 278
MbiI	CCGCTC	2 cut(s)	34, 402
MboI	GATC	4 cut(s)	64, 184, 237, 276
MboII	GAAGA	2 cut(s)	187, 321
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	366
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	2 cut(s)	159, 233
MspI	CCGG	2 cut(s)	12, 414
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	2 cut(s)	29, 260
MwoI	GCNNNNNNNGC	4 cut(s)	12, 117, 123, 399
NaeI	GCCGGC	1 cut(s)	13
NdeII	GATC	4 cut(s)	64, 184, 237, 276
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	2 cut(s)	165, 186
NmuCI	GTSAC	1 cut(s)	82
NruI	TCGCGA	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 185
PdiI	GCCGGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	33, 119, 412, 422
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	165, 186
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	184
RigI	GGCCGGCC	1 cut(s)	15
RruI	TCGCGA	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	159, 233
SatI	GCNGC	4 cut(s)	32, 118, 411, 421
Sau3AI	GATC	4 cut(s)	64, 184, 237, 276
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	5 cut(s)	84, 122, 165, 338, 429
SfiI	GGCCNNNNNGGCC	1 cut(s)	12
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	9 cut(s)	27, 32, 124, 153, 182, 340, 371, 402, 420
StyD4I	CCNGG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	173, 319
TasI	AATT	1 cut(s)	366
TauI	GCSGC	2 cut(s)	34, 423
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	159, 233
Tru9I	TTAA	2 cut(s)	159, 233
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	117, 410
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	2 cut(s)	45, 177
TspRI	CASTG	1 cut(s)	436
Van91I	CCANNNNNTGG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.