Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

11529210 .. 11540526

Gene Structure 11317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG136100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTTGGACTGCGCAGGACGCGCCGCCTTAAACGAGCACTCATCTCAAGACTGCAATCCTGGTATCACAGATTATGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGAGGAGAAAATTAACTAACAGAAATGATCAAAACACTTTGACGTTCATGAGCAAATCGATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

62

Amino Acids

7.03

Weight (kDa)

8.74

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	13
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	14, 23
Bbv12I	GWGCWC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	148
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	30, 110
Bsa29I	ATCGAT	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	21
BshVI	ATCGAT	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	148, 180
BspACI	CCGC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	114
BspDI	ATCGAT	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	168
BssMI	GATC	2 cut(s)	148, 180
Bst2UI	CCWGG	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	14, 23
BstKTI	GATC	2 cut(s)	151, 183
BstMBI	GATC	2 cut(s)	148, 180
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 20
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstUI	CGCG	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	179
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	2 cut(s)	14, 23
ClaI	ATCGAT	1 cut(s)	179
CseI	GACGC	1 cut(s)	27
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	2 cut(s)	88, 119
CviKI_1	RGCY	2 cut(s)	88, 119
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	150, 182
DpnII	GATC	2 cut(s)	148, 180
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	75, 170
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspEI	CC	9 cut(s)	37, 40, 45, 65, 72, 83, 84, 101, 109
FspI	TGCGCA	1 cut(s)	13
GlaI	GCGC	2 cut(s)	13, 22
GluI	GCNGC	1 cut(s)	24
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	2 cut(s)	14, 23
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	2 cut(s)	12, 21
HinP1I	GCGC	2 cut(s)	12, 21
Hpy188I	TCNGA	2 cut(s)	105, 123
Hpy188III	TCNNGA	2 cut(s)	47, 169
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 20
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	2 cut(s)	12, 21
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	148, 180
LpnPI	CCDG	2 cut(s)	45, 72
MaeII	ACGT	1 cut(s)	164
MalI	GATC	2 cut(s)	150, 182
MboI	GATC	2 cut(s)	148, 180
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	131
MnlI	CCTC	1 cut(s)	117
MseI	TTAA	2 cut(s)	29, 134
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	18, 20
NdeII	GATC	2 cut(s)	148, 180
NlaIII	CATG	1 cut(s)	172
NsbI	TGCGCA	1 cut(s)	13
PagI	TCATGA	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	29, 134
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	148, 180
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	2 cut(s)	90, 167
SgeI	CNNG	9 cut(s)	27, 32, 46, 59, 71, 72, 101, 125, 181
SmlI	CTYRAG	2 cut(s)	45, 89
SmoI	CTYRAG	2 cut(s)	45, 89
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	58
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	131
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	29, 134
Tru9I	TTAA	2 cut(s)	29, 134
TspDTI	ATGAA	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.