Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

66682191 .. 66682699

Gene Structure 509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGTATAAGTTTCTGTATTGGGGAATGATGGACTACCTATATGCAAAGTGCACTCCTTGTATCATAGATTGTGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGAGATGTGAACTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004015 GO:0004141 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006768 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009102 GO:0009108 GO:0009110 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0016874 GO:0016879 GO:0016882 GO:0017144 GO:0018130 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

AAA_26 Aminotran_3

Protein Analysis

45

Amino Acids

5.36

Weight (kDa)

7.62

Isoelectric Point (pI)

20.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fcf1	PF04900	11 - 41	1.4e-06	Fcf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	53
Alw44I	GTGCAC	1 cut(s)	49
ApaLI	GTGCAC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	53
BccI	CCATC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	53
CviJI	RGCY	2 cut(s)	85, 116
CviKI_1	RGCY	2 cut(s)	85, 116
DdeI	CTNAG	1 cut(s)	119
FaiI	YATR	4 cut(s)	6, 40, 42, 65
Hpy166II	GTNNAC	2 cut(s)	51, 128
Hpy188I	TCNGA	2 cut(s)	102, 120
Hpy8I	GTNNAC	2 cut(s)	51, 128
HpyCH4V	TGCA	2 cut(s)	44, 51
HpyF3I	CTNAG	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	53
MseI	TTAA	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	2 cut(s)	39, 87
SgeI	CNNG	3 cut(s)	69, 98, 122
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	136
Tru9I	TTAA	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.