Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Forward (+)

78566497 .. 78569012

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021818

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTTCTATGGGGTTGTTCTCTTAACACTGCTTTGGGGCCACCTTACCAGGTTTCGGCAGATACCAACTTTATCAATTTCGCTATCCAGAATAAGTTGGATTTGGAGAAAGGAATGATGAACTGTCCATATGCAAAGTGCACTCCTGGTATCACAGATTATGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGAGCCACCATCTCACCACAATGGGCCAGGCCGGCCTCACCCTCACCCCGCCTCTCCTCTCTCCTCCTCCTCCTCCTCCTCCGCCGTCCGATCAACCCCATTTGAACGTCACCGTCCACGACGACGACGACGGCAACGGCAGCTTCCGCAACCCGTTTGTGTTTCTCAGGTCGGGCGGGTTTAAGGTGCCCATTTCGACGACGGCGGATCCGTTCAAGAACCATACTTTGAAAATTGGAGGGGTTTACGAGTGGTTAAAGATCGGGGTTTGCTTCCCCATCGCGATTTTGAGGCTTGTGATCTTTGGGGTTTCGTTGCTGATTGGGTTTGTGGCCACCAAATTGGCTCTGTTGGCTGAAGAAGAAGAGAGGATTGTGATCTTTGGGGTTTCGTTGCTGAAGCTTATTGTTCTTTTGTGTAGTACTAGTACTAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0050200 GO:0071617 GO:0071618 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase EF-hand_1 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

216

Amino Acids

23.47

Weight (kDa)

6.95

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	394
AccII	CGCG	1 cut(s)	491
AciI	CCGC	5 cut(s)	257, 290, 355, 384, 413
AclWI	GGATC	2 cut(s)	410, 423
AcoI	YGGCCR	1 cut(s)	540
AcuI	CTGAAG	2 cut(s)	585, 626
AfaI	GTAC	2 cut(s)	631, 637
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	313, 424, 439
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	3 cut(s)	48, 145, 234
AluBI	AGCT	4 cut(s)	175, 351, 610, 645
AluI	AGCT	4 cut(s)	175, 351, 610, 645
Alw21I	GWGCWC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	139
AlwI	GGATC	2 cut(s)	410, 423
AoxI	GGCC	5 cut(s)	38, 232, 237, 241, 540
ApaLI	GTGCAC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	38, 232
AsuHPI	GGTGA	4 cut(s)	214, 238, 244, 310
BaeGI	GKGCMC	2 cut(s)	143, 399
BalI	TGGCCA	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	2 cut(s)	225, 494
BceAI	ACGGC	4 cut(s)	277, 355, 361, 426
BciT130I	CCWGG	3 cut(s)	50, 147, 236
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	2 cut(s)	633, 639
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
BmcAI	AGTACT	2 cut(s)	631, 637
Bme1390I	CCNGG	3 cut(s)	50, 147, 236
BmgT120I	GGNCC	2 cut(s)	38, 232
BmiI	GGNNCC	3 cut(s)	39, 396, 417
BmrFI	CCNGG	3 cut(s)	50, 147, 236
BpuEI	CTTGAG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	584
BseBI	CCWGG	3 cut(s)	50, 147, 236
BseJI	GATNNNNATC	1 cut(s)	584
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	200, 388
BseRI	GAGGAG	7 cut(s)	254, 261, 264, 267, 270, 273, 276
BseSI	GKGCMC	2 cut(s)	143, 399
BseXI	GCAGC	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	5 cut(s)	40, 234, 239, 243, 542
BshNI	GGYRCC	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	55
BsnI	GGCC	5 cut(s)	40, 234, 239, 243, 542
Bsp1286I	GDGCHC	2 cut(s)	143, 399
Bsp143I	GATC	5 cut(s)	298, 415, 468, 507, 585
Bsp68I	TCGCGA	1 cut(s)	491
BspACI	CCGC	5 cut(s)	257, 290, 355, 384, 413
BspANI	GGCC	5 cut(s)	40, 234, 239, 243, 542
BspCNI	CTCAG	2 cut(s)	201, 387
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	39, 396, 417
BspPI	GGATC	2 cut(s)	410, 423
BspT107I	GGYRCC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssMI	GATC	5 cut(s)	298, 415, 468, 507, 585
Bst2UI	CCWGG	3 cut(s)	50, 147, 236
Bst4CI	ACNGT	2 cut(s)	125, 322
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	209, 374
BstFNI	CGCG	1 cut(s)	491
BstKTI	GATC	5 cut(s)	301, 418, 471, 510, 588
BstMBI	GATC	5 cut(s)	298, 415, 468, 507, 585
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 348, 354, 560
BstNI	CCWGG	3 cut(s)	50, 147, 236
BstSCI	CCNGG	3 cut(s)	48, 145, 234
BstSLI	GKGCMC	2 cut(s)	143, 399
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	5 cut(s)	40, 234, 239, 243, 542
BtgZI	GCGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
BtuMI	TCGCGA	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	38, 232
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	630, 636
CviQI	GTAC	2 cut(s)	630, 636
DdeI	CTNAG	2 cut(s)	209, 374
DpnI	GATC	5 cut(s)	300, 417, 470, 509, 587
DpnII	GATC	5 cut(s)	298, 415, 468, 507, 585
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	2 cut(s)	279, 428
Eco57I	CTGAAG	2 cut(s)	585, 626
EcoRII	CCWGG	3 cut(s)	48, 145, 234
FaiI	YATR	5 cut(s)	10, 130, 132, 162, 432
FauI	CCCGC	2 cut(s)	264, 377
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	349
FseI	GGCCGGCC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	349
FspBI	CTAG	2 cut(s)	633, 639
GluI	GCNGC	1 cut(s)	349
HaeIII	GGCC	5 cut(s)	40, 234, 239, 243, 542
HapII	CCGG	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	608
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	4 cut(s)	214, 238, 244, 310
Hpy166II	GTNNAC	3 cut(s)	141, 325, 454
Hpy188I	TCNGA	3 cut(s)	192, 210, 298
Hpy188III	TCNNGA	3 cut(s)	88, 424, 490
Hpy8I	GTNNAC	3 cut(s)	141, 325, 454
Hpy99I	CGWCG	6 cut(s)	332, 335, 338, 341, 409, 412
HpyCH4III	ACNGT	2 cut(s)	125, 322
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	134, 141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 348, 354, 560
HpyF3I	CTNAG	2 cut(s)	209, 374
HpySE526I	ACGT	1 cut(s)	315
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	298, 415, 468, 507, 585
LpnPI	CCDG	9 cut(s)	35, 62, 101, 132, 159, 221, 248, 253, 361
Lsp1109I	GCAGC	1 cut(s)	360
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	2 cut(s)	633, 639
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	5 cut(s)	300, 417, 470, 509, 587
MboI	GATC	5 cut(s)	298, 415, 468, 507, 585
MboII	GAAGA	3 cut(s)	578, 581, 584
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	143, 399
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	3 cut(s)	76, 441, 548
MluNI	TGGCCA	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	542
MroNI	GCCGGC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	3 cut(s)	24, 390, 464
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	3 cut(s)	50, 147, 236
MvaI	CCWGG	3 cut(s)	50, 147, 236
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	4 cut(s)	240, 348, 354, 560
NaeI	GCCGGC	1 cut(s)	241
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	5 cut(s)	298, 415, 468, 507, 585
NgoMIV	GCCGGC	1 cut(s)	239
NlaIV	GGNNCC	3 cut(s)	39, 396, 417
NmuCI	GTSAC	1 cut(s)	316
NruI	TCGCGA	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 416
PdiI	GCCGGC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	350
Psp6I	CCWGG	3 cut(s)	48, 145, 234
PspGI	CCWGG	3 cut(s)	48, 145, 234
PspN4I	GGNNCC	3 cut(s)	39, 396, 417
PspPI	GGNCC	2 cut(s)	38, 232
PsuI	RGATCY	1 cut(s)	415
RigI	GGCCGGCC	1 cut(s)	243
RruI	TCGCGA	1 cut(s)	491
RsaI	GTAC	2 cut(s)	631, 637
RsaNI	GTAC	2 cut(s)	630, 636
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	24, 390, 464
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	5 cut(s)	298, 415, 468, 507, 585
Sau96I	GGNCC	2 cut(s)	38, 232
ScaI	AGTACT	2 cut(s)	631, 637
ScrFI	CCNGG	3 cut(s)	50, 147, 236
SduI	GDGCHC	2 cut(s)	143, 399
SetI	ASST	9 cut(s)	46, 54, 177, 318, 353, 380, 396, 612, 647
SexAI	ACCWGGT	1 cut(s)	48
SfiI	GGCCNNNNNGGCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	632
Sse9I	AATT	3 cut(s)	76, 441, 548
SsiI	CCGC	5 cut(s)	257, 290, 355, 384, 413
SspMI	CTAG	2 cut(s)	633, 639
StyD4I	CCNGG	3 cut(s)	48, 145, 234
TaaI	ACNGT	2 cut(s)	125, 322
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	404
TasI	AATT	3 cut(s)	76, 441, 548
TatI	WGTACW	2 cut(s)	629, 635
Tru1I	TTAA	3 cut(s)	24, 390, 464
Tru9I	TTAA	3 cut(s)	24, 390, 464
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	139
XspI	CTAG	2 cut(s)	633, 639
ZrmI	AGTACT	2 cut(s)	631, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.