BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26530 AT2G46230 AT2G46230 |
| fragaria_vesca | FvH4_7g15670 |
| malus_domestica | MD01G1073500.v1.1 |
| prunus_persica | Prupe.2G181300_v2.0.a1 |
| pyrus_communis | pycom01g10270 pycom07g12640 |
| rosa_chinensis | RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171 |
| rosa_laevigata | RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557 |
| rosa_multiflora | Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032 |
| rosa_roxburghii | Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490 |
| rosa_rugosa | Rorug01G0261400 Rorug05G0537800 |
| rosa_samantha | Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300 |
| rosa_wichuraiana | Rw1G024530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 391 |
| AclWI | GGATC | 1 cut(s) | 359 |
| AcuI | CTGAAG | 1 cut(s) | 579 |
| AdeI | CACNNNGTG | 1 cut(s) | 572 |
| AfaI | GTAC | 4 cut(s) | 132, 272, 539, 587 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 196 |
| AflIII | ACRYGT | 1 cut(s) | 464 |
| AgsI | TTSAA | 1 cut(s) | 67 |
| AjnI | CCWGG | 1 cut(s) | 502 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 552, 584 |
| AluBI | AGCT | 4 cut(s) | 62, 347, 563, 578 |
| AluI | AGCT | 4 cut(s) | 62, 347, 563, 578 |
| Alw21I | GWGCWC | 1 cut(s) | 580 |
| Alw26I | GTCTC | 3 cut(s) | 255, 425, 468 |
| AlwI | GGATC | 1 cut(s) | 359 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 84 |
| AspS9I | GGNCC | 1 cut(s) | 106 |
| AsuII | TTCGAA | 2 cut(s) | 375, 493 |
| AvaII | GGWCC | 1 cut(s) | 106 |
| BaeGI | GKGCMC | 1 cut(s) | 513 |
| BanII | GRGCYC | 1 cut(s) | 580 |
| Bbv12I | GWGCWC | 1 cut(s) | 580 |
| BccI | CCATC | 1 cut(s) | 521 |
| BciT130I | CCWGG | 1 cut(s) | 504 |
| BciVI | GTATCC | 1 cut(s) | 196 |
| BcoDI | GTCTC | 3 cut(s) | 255, 425, 468 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BfuI | GTATCC | 1 cut(s) | 196 |
| BmcAI | AGTACT | 1 cut(s) | 539 |
| Bme1390I | CCNGG | 1 cut(s) | 504 |
| Bme18I | GGWCC | 1 cut(s) | 106 |
| BmgT120I | GGNCC | 1 cut(s) | 106 |
| BmiI | GGNNCC | 1 cut(s) | 180 |
| BmrFI | CCNGG | 1 cut(s) | 504 |
| Bpu14I | TTCGAA | 2 cut(s) | 375, 493 |
| BpuEI | CTTGAG | 1 cut(s) | 266 |
| Bsa29I | ATCGAT | 1 cut(s) | 240 |
| BsaJI | CCNNGG | 1 cut(s) | 581 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseBI | CCWGG | 1 cut(s) | 504 |
| BseCI | ATCGAT | 1 cut(s) | 240 |
| BseDI | CCNNGG | 1 cut(s) | 581 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseMII | CTCAG | 2 cut(s) | 303, 452 |
| BseSI | GKGCMC | 1 cut(s) | 513 |
| BshVI | ATCGAT | 1 cut(s) | 240 |
| BsiHKAI | GWGCWC | 1 cut(s) | 580 |
| BslFI | GGGAC | 1 cut(s) | 415 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BsmAI | GTCTC | 3 cut(s) | 255, 425, 468 |
| BsmFI | GGGAC | 1 cut(s) | 415 |
| Bsp119I | TTCGAA | 2 cut(s) | 375, 493 |
| Bsp1286I | GDGCHC | 2 cut(s) | 513, 580 |
| Bsp143I | GATC | 3 cut(s) | 237, 241, 364 |
| BspCNI | CTCAG | 2 cut(s) | 304, 451 |
| BspDI | ATCGAT | 1 cut(s) | 240 |
| BspLI | GGNNCC | 1 cut(s) | 180 |
| BspMAI | CTGCAG | 1 cut(s) | 148 |
| BspPI | GGATC | 1 cut(s) | 359 |
| BspT104I | TTCGAA | 2 cut(s) | 375, 493 |
| BssECI | CCNNGG | 1 cut(s) | 581 |
| BssMI | GATC | 3 cut(s) | 237, 241, 364 |
| BssNAI | GTATAC | 1 cut(s) | 392 |
| BssT1I | CCWWGG | 1 cut(s) | 581 |
| Bst1107I | GTATAC | 1 cut(s) | 392 |
| Bst2UI | CCWGG | 1 cut(s) | 504 |
| Bst4CI | ACNGT | 3 cut(s) | 191, 266, 419 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstBI | TTCGAA | 2 cut(s) | 375, 493 |
| BstDEI | CTNAG | 3 cut(s) | 312, 350, 438 |
| BstKTI | GATC | 3 cut(s) | 240, 244, 367 |
| BstMAI | GTCTC | 3 cut(s) | 255, 425, 468 |
| BstMBI | GATC | 3 cut(s) | 237, 241, 364 |
| BstNI | CCWGG | 1 cut(s) | 504 |
| BstNSI | RCATGY | 1 cut(s) | 468 |
| BstSCI | CCNGG | 1 cut(s) | 502 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstSLI | GKGCMC | 1 cut(s) | 513 |
| BstX2I | RGATCY | 1 cut(s) | 364 |
| BstYI | RGATCY | 1 cut(s) | 364 |
| BstZ17I | GTATAC | 1 cut(s) | 392 |
| Bsu15I | ATCGAT | 1 cut(s) | 240 |
| BsuI | GTATCC | 1 cut(s) | 196 |
| BsuTUI | ATCGAT | 1 cut(s) | 240 |
| Cfr13I | GGNCC | 1 cut(s) | 106 |
| ClaI | ATCGAT | 1 cut(s) | 240 |
| Csp6I | GTAC | 4 cut(s) | 131, 271, 538, 586 |
| CviAII | CATG | 3 cut(s) | 307, 465, 517 |
| CviJI | RGCY | 8 cut(s) | 54, 62, 151, 311, 347, 461, 563, 578 |
| CviKI_1 | RGCY | 8 cut(s) | 54, 62, 151, 311, 347, 461, 563, 578 |
| CviQI | GTAC | 4 cut(s) | 131, 271, 538, 586 |
| DdeI | CTNAG | 3 cut(s) | 312, 350, 438 |
| DpnI | GATC | 3 cut(s) | 239, 243, 366 |
| DpnII | GATC | 3 cut(s) | 237, 241, 364 |
| DraIII | CACNNNGTG | 1 cut(s) | 572 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Ecl136II | GAGCTC | 1 cut(s) | 578 |
| Eco130I | CCWWGG | 1 cut(s) | 581 |
| Eco24I | GRGCYC | 1 cut(s) | 580 |
| Eco47I | GGWCC | 1 cut(s) | 106 |
| Eco53kI | GAGCTC | 1 cut(s) | 578 |
| Eco57I | CTGAAG | 1 cut(s) | 579 |
| EcoICRI | GAGCTC | 1 cut(s) | 578 |
| EcoO109I | RGGNCCY | 1 cut(s) | 106 |
| EcoRII | CCWGG | 1 cut(s) | 502 |
| EcoT14I | CCWWGG | 1 cut(s) | 581 |
| EcoT38I | GRGCYC | 1 cut(s) | 580 |
| ErhI | CCWWGG | 1 cut(s) | 581 |
| FaeI | CATG | 3 cut(s) | 310, 468, 520 |
| FaiI | YATR | 9 cut(s) | 308, 392, 406, 408, 444, 455, 466, 518, 522 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 370, 402, 552, 584 |
| FaqI | GGGAC | 1 cut(s) | 415 |
| FatI | CATG | 3 cut(s) | 306, 464, 516 |
| FauNDI | CATATG | 1 cut(s) | 406 |
| FblI | GTMKAC | 1 cut(s) | 391 |
| FriOI | GRGCYC | 1 cut(s) | 580 |
| Hin1II | CATG | 3 cut(s) | 310, 468, 520 |
| HincII | GTYRAC | 1 cut(s) | 427 |
| HindII | GTYRAC | 1 cut(s) | 427 |
| HindIII | AAGCTT | 1 cut(s) | 60 |
| HinfI | GANTC | 3 cut(s) | 91, 490, 499 |
| Hpy166II | GTNNAC | 2 cut(s) | 392, 427 |
| Hpy188I | TCNGA | 3 cut(s) | 90, 123, 333 |
| Hpy188III | TCNNGA | 3 cut(s) | 37, 229, 245 |
| Hpy8I | GTNNAC | 2 cut(s) | 392, 427 |
| HpyAV | CCTTC | 3 cut(s) | 97, 244, 480 |
| HpyCH4III | ACNGT | 3 cut(s) | 191, 266, 419 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 2 cut(s) | 146, 282 |
| HpyF3I | CTNAG | 3 cut(s) | 312, 350, 438 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92II | CATG | 3 cut(s) | 310, 468, 520 |
| Kzo9I | GATC | 3 cut(s) | 237, 241, 364 |
| LmnI | GCTCC | 2 cut(s) | 575, 583 |
| LpnPI | CCDG | 6 cut(s) | 132, 156, 242, 489, 516, 570 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MaeIII | GTNAC | 2 cut(s) | 433, 523 |
| MalI | GATC | 3 cut(s) | 239, 243, 366 |
| MboI | GATC | 3 cut(s) | 237, 241, 364 |
| MboII | GAAGA | 3 cut(s) | 52, 55, 92 |
| MflI | RGATCY | 1 cut(s) | 364 |
| MhlI | GDGCHC | 2 cut(s) | 513, 580 |
| MluCI | AATT | 1 cut(s) | 277 |
| MnlI | CCTC | 5 cut(s) | 30, 76, 119, 192, 378 |
| MroXI | GAANNNNTTC | 1 cut(s) | 84 |
| MseI | TTAA | 1 cut(s) | 479 |
| MslI | CAYNNNNRTG | 1 cut(s) | 521 |
| MspR9I | CCNGG | 1 cut(s) | 504 |
| MvaI | CCWGG | 1 cut(s) | 504 |
| NdeI | CATATG | 1 cut(s) | 406 |
| NdeII | GATC | 3 cut(s) | 237, 241, 364 |
| NlaIII | CATG | 3 cut(s) | 310, 468, 520 |
| NlaIV | GGNNCC | 1 cut(s) | 180 |
| NmuCI | GTSAC | 1 cut(s) | 523 |
| NspI | RCATGY | 1 cut(s) | 468 |
| NspV | TTCGAA | 2 cut(s) | 375, 493 |
| PciI | ACATGT | 1 cut(s) | 464 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 84 |
| PfeI | GAWTC | 3 cut(s) | 91, 490, 499 |
| PpuMI | RGGWCCY | 1 cut(s) | 106 |
| PscI | ACATGT | 1 cut(s) | 464 |
| Psp124BI | GAGCTC | 1 cut(s) | 580 |
| Psp5II | RGGWCCY | 1 cut(s) | 106 |
| Psp6I | CCWGG | 1 cut(s) | 502 |
| PspGI | CCWGG | 1 cut(s) | 502 |
| PspN4I | GGNNCC | 1 cut(s) | 180 |
| PspPI | GGNCC | 1 cut(s) | 106 |
| PspPPI | RGGWCCY | 1 cut(s) | 106 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 123, 155 |
| PstI | CTGCAG | 1 cut(s) | 148 |
| PsuI | RGATCY | 1 cut(s) | 364 |
| RsaI | GTAC | 4 cut(s) | 132, 272, 539, 587 |
| RsaNI | GTAC | 4 cut(s) | 131, 271, 538, 586 |
| RseI | CAYNNNNRTG | 1 cut(s) | 521 |
| SacI | GAGCTC | 1 cut(s) | 580 |
| SaqAI | TTAA | 1 cut(s) | 479 |
| Sau3AI | GATC | 3 cut(s) | 237, 241, 364 |
| Sau96I | GGNCC | 1 cut(s) | 106 |
| SbfI | CCTGCAGG | 1 cut(s) | 148 |
| ScaI | AGTACT | 1 cut(s) | 539 |
| ScrFI | CCNGG | 1 cut(s) | 504 |
| SdaI | CCTGCAGG | 1 cut(s) | 148 |
| SduI | GDGCHC | 2 cut(s) | 513, 580 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| SfuI | TTCGAA | 2 cut(s) | 375, 493 |
| SinI | GGWCC | 1 cut(s) | 106 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 521 |
| SmlI | CTYRAG | 1 cut(s) | 245 |
| SmoI | CTYRAG | 1 cut(s) | 245 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 148 |
| Sse9I | AATT | 1 cut(s) | 277 |
| SstI | GAGCTC | 1 cut(s) | 580 |
| StyD4I | CCNGG | 1 cut(s) | 502 |
| StyI | CCWWGG | 1 cut(s) | 581 |
| TaaI | ACNGT | 3 cut(s) | 191, 266, 419 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 3 cut(s) | 240, 375, 493 |
| TasI | AATT | 1 cut(s) | 277 |
| TatI | WGTACW | 1 cut(s) | 537 |
| TfiI | GAWTC | 3 cut(s) | 91, 490, 499 |
| Tru1I | TTAA | 1 cut(s) | 479 |
| Tru9I | TTAA | 1 cut(s) | 479 |
| TseFI | GTSAC | 1 cut(s) | 523 |
| Tsp45I | GTSAC | 1 cut(s) | 523 |
| TspDTI | ATGAA | 2 cut(s) | 202, 442 |
| TspGWI | ACGGA | 2 cut(s) | 128, 311 |
| VpaK11BI | GGWCC | 1 cut(s) | 106 |
| XceI | RCATGY | 1 cut(s) | 468 |
| XmiI | GTMKAC | 1 cut(s) | 391 |
| XmnI | GAANNNNTTC | 1 cut(s) | 84 |
| ZrmI | AGTACT | 1 cut(s) | 539 |