Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Forward (+)

43888356 .. 43890340

Gene Structure 1985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTAATGCTCGAGCCATTGGTGCATTTCCGGTGCTTGTGTTAGTCCAGTTCTTTGTTATTGCAGCAGAGGCAAACACTCAGGAATGTTCTCGGTTTACGAACTTTGTGGGAATACTTAGCCAAGGACTAAGAATAGCTCCTCCTGAAGCTCCAGCTACTGGTTATATGTTTGGCAAGGGGATTTACTTTGCTGACCTTGTCAGTAAGAGTGCTCAGTATTGCTATACAGATAAGAAAAATCCTGTGGGCCTCATGCTTTTAAGTGAAGTTGCCCTGGGAGAGATCCATGAGCTCAAGAAGGCCACAACCACCGCTTCCGGCCACCATCTCACCACAATGGGCCAGGCCGACCTCACCCTCACCGCGCCGCTCCTCTCTCCTCCTCCTCCTTTGCCGTCCGATCAACCCCACTTGAACGTCACCGTCCATGACGATGACAACAACGGCAACGGCAGCTTCCGCAACCCGTTTGCGTTTCTCGGGTCGGGCGGGTTTAAGGTGCCCATATCGACGACGGCAGATCCGTTCAAGAACCATAATTTGAAAATCGGAGGGGTTTACGAGTGGTTAAAGATCGGGGTTTTCTTCCCCATTGCGATTTTGAGGCTTGTGATCTTTGGGGTTTCGTTGCTGATTGGGTTTGTGGCCACCAAATTGGCTCTGTTGGCTGAAGAAGAAGAGAGGATTGTGATCTTTGGGGTTTCGTTGCTGAAGCTTATTGTTCTTCTGTGTAGTACTAGTACTAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

251

Amino Acids

26.98

Weight (kDa)

7.01

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	31 - 116	8.4e-33	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	502
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	1 cut(s)	368
AciI	CCGC	5 cut(s)	315, 366, 371, 463, 492
AclWI	GGATC	2 cut(s)	280, 518
AcoI	YGGCCR	2 cut(s)	322, 648
AcuI	CTGAAG	3 cut(s)	168, 693, 734
AfaI	GTAC	2 cut(s)	739, 745
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	418, 532, 547
AhlI	ACTAGT	1 cut(s)	740
AjnI	CCWGG	2 cut(s)	276, 345
AluBI	AGCT	7 cut(s)	140, 152, 158, 295, 459, 718, 753
AluI	AGCT	7 cut(s)	140, 152, 158, 295, 459, 718, 753
Alw21I	GWGCWC	2 cut(s)	217, 297
AlwI	GGATC	2 cut(s)	280, 518
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	2 cut(s)	12, 482
AoxI	GGCC	6 cut(s)	250, 303, 322, 343, 348, 648
ApeKI	GCWGC	2 cut(s)	65, 456
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	250, 343
AsuHPI	GGTGA	4 cut(s)	325, 349, 355, 415
AvaI	CYCGRG	2 cut(s)	12, 482
BaeGI	GKGCMC	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	217, 297
BbvI	GCAGC	2 cut(s)	77, 468
BccI	CCATC	1 cut(s)	336
BceAI	ACGGC	4 cut(s)	382, 463, 469, 534
BciT130I	CCWGG	2 cut(s)	278, 347
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	2 cut(s)	741, 747
BisI	GCNGC	3 cut(s)	66, 371, 457
BlsI	GCNGC	3 cut(s)	67, 372, 458
BmcAI	AGTACT	2 cut(s)	739, 745
Bme1390I	CCNGG	2 cut(s)	278, 347
BmeT110I	CYCGRG	2 cut(s)	12, 482
BmgT120I	GGNCC	2 cut(s)	250, 343
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	2 cut(s)	278, 347
BpmI	CTGGAG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	692
BsaJI	CCNNGG	3 cut(s)	124, 276, 277
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	49, 166
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	692
BseBI	CCWGG	2 cut(s)	278, 347
BseDI	CCNNGG	3 cut(s)	124, 276, 277
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	95, 230
BseNI	ACTGG	2 cut(s)	49, 166
BseRI	GAGGAG	5 cut(s)	132, 365, 372, 375, 378
BseSI	GKGCMC	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	77, 468
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	6 cut(s)	252, 305, 324, 345, 350, 650
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	217, 297
BsiHKCI	CYCGRG	2 cut(s)	12, 482
BsiSI	CCGG	2 cut(s)	32, 321
BslI	CCNNNNNNNGG	1 cut(s)	161
BsnI	GGCC	6 cut(s)	252, 305, 324, 345, 350, 650
BsoBI	CYCGRG	2 cut(s)	12, 482
Bsp1286I	GDGCHC	3 cut(s)	217, 297, 507
Bsp143I	GATC	6 cut(s)	285, 403, 523, 576, 615, 693
BspACI	CCGC	5 cut(s)	315, 366, 371, 463, 492
BspANI	GGCC	6 cut(s)	252, 305, 324, 345, 350, 650
BspCNI	CTCAG	2 cut(s)	94, 229
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	280, 518
BspT107I	GGYRCC	1 cut(s)	502
BsrBI	CCGCTC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	49, 166
BssECI	CCNNGG	3 cut(s)	124, 276, 277
BssMI	GATC	6 cut(s)	285, 403, 523, 576, 615, 693
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	278, 347
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	675
BstDEI	CTNAG	4 cut(s)	81, 119, 131, 216
BstFNI	CGCG	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	6 cut(s)	288, 406, 526, 579, 618, 696
BstMBI	GATC	6 cut(s)	285, 403, 523, 576, 615, 693
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 71, 456, 462, 668
BstNI	CCWGG	2 cut(s)	278, 347
BstSCI	CCNGG	2 cut(s)	276, 345
BstSLI	GKGCMC	1 cut(s)	507
BstUI	CGCG	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	77, 468
BstX2I	RGATCY	2 cut(s)	285, 523
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	2 cut(s)	285, 523
BsuRI	GGCC	6 cut(s)	252, 305, 324, 345, 350, 650
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	250, 343
Csp6I	GTAC	2 cut(s)	738, 744
CviAII	CATG	3 cut(s)	256, 290, 431
CviQI	GTAC	2 cut(s)	738, 744
DdeI	CTNAG	4 cut(s)	81, 119, 131, 216
DpnI	GATC	6 cut(s)	287, 405, 525, 578, 617, 695
DpnII	GATC	6 cut(s)	285, 403, 523, 576, 615, 693
EaeI	YGGCCR	2 cut(s)	322, 648
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	3 cut(s)	168, 693, 734
Eco88I	CYCGRG	2 cut(s)	12, 482
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	276, 345
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	3 cut(s)	259, 293, 434
FaiI	YATR	8 cut(s)	168, 170, 228, 257, 291, 432, 509, 540
FatI	CATG	3 cut(s)	255, 289, 430
FauI	CCCGC	1 cut(s)	485
Fnu4HI	GCNGC	3 cut(s)	66, 371, 457
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	3 cut(s)	66, 371, 457
FspBI	CTAG	2 cut(s)	741, 747
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	3 cut(s)	66, 371, 457
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	6 cut(s)	252, 305, 324, 345, 350, 650
HapII	CCGG	2 cut(s)	32, 321
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	259, 293, 434
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	716
HpaII	CCGG	2 cut(s)	32, 321
HphI	GGTGA	4 cut(s)	325, 349, 355, 415
Hpy166II	GTNNAC	2 cut(s)	99, 562
Hpy188I	TCNGA	2 cut(s)	403, 554
Hpy188III	TCNNGA	4 cut(s)	83, 146, 298, 532
Hpy8I	GTNNAC	2 cut(s)	99, 562
Hpy99I	CGWCG	2 cut(s)	517, 520
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	26, 65
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 71, 456, 462, 668
HpyF3I	CTNAG	4 cut(s)	81, 119, 131, 216
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	259, 293, 434
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	6 cut(s)	285, 403, 523, 576, 615, 693
LmnI	GCTCC	3 cut(s)	145, 157, 378
Lsp1109I	GCAGC	2 cut(s)	77, 468
MaeI	CTAG	2 cut(s)	741, 747
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	6 cut(s)	287, 405, 525, 578, 617, 695
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	6 cut(s)	285, 403, 523, 576, 615, 693
MboII	GAAGA	5 cut(s)	580, 686, 689, 692, 719
MflI	RGATCY	2 cut(s)	285, 523
MhlI	GDGCHC	3 cut(s)	217, 297, 507
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	2 cut(s)	541, 656
MluNI	TGGCCA	1 cut(s)	650
Mox20I	TGGCCA	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	3 cut(s)	263, 498, 572
MslI	CAYNNNNRTG	2 cut(s)	338, 435
Msp20I	TGGCCA	1 cut(s)	650
MspI	CCGG	2 cut(s)	32, 321
MspR9I	CCNGG	2 cut(s)	278, 347
MvaI	CCWGG	2 cut(s)	278, 347
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	5 cut(s)	23, 71, 456, 462, 668
NdeII	GATC	6 cut(s)	285, 403, 523, 576, 615, 693
NlaIII	CATG	3 cut(s)	259, 293, 434
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	12
PasI	CCCWGGG	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	524
PflFI	GACNNNGTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	67, 372, 458
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	276, 345
PspGI	CCWGG	2 cut(s)	276, 345
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	250, 343
PspXI	VCTCGAGB	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	285, 523
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	2 cut(s)	739, 745
RsaNI	GTAC	2 cut(s)	738, 744
RseI	CAYNNNNRTG	2 cut(s)	338, 435
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	263, 498, 572
SatI	GCNGC	3 cut(s)	66, 371, 457
Sau3AI	GATC	6 cut(s)	285, 403, 523, 576, 615, 693
Sau96I	GGNCC	2 cut(s)	250, 343
ScaI	AGTACT	2 cut(s)	739, 745
ScrFI	CCNGG	2 cut(s)	278, 347
SduI	GDGCHC	3 cut(s)	217, 297, 507
Sfr274I	CTCGAG	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	338, 435
SmlI	CTYRAG	2 cut(s)	12, 296
SmoI	CTYRAG	2 cut(s)	12, 296
SpeI	ACTAGT	1 cut(s)	740
Sse9I	AATT	2 cut(s)	541, 656
SsiI	CCGC	5 cut(s)	315, 366, 371, 463, 492
SspMI	CTAG	2 cut(s)	741, 747
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	276, 345
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	13, 512
TasI	AATT	2 cut(s)	541, 656
TatI	WGTACW	2 cut(s)	737, 743
TauI	GCSGC	1 cut(s)	373
Tru1I	TTAA	3 cut(s)	263, 498, 572
Tru9I	TTAA	3 cut(s)	263, 498, 572
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	65, 456
Tsp45I	GTSAC	1 cut(s)	421
TspGWI	ACGGA	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	12
XspI	CTAG	2 cut(s)	741, 747
ZrmI	AGTACT	2 cut(s)	739, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.