Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

89677829 .. 89682189

Gene Structure 4361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG567000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAATACAAAGCAAATGTTTATCTCTGGGGTGCATTACAATGTTGTGTTGGAGAAGATTGAGGTTGGAAGTGATTTGGATTTGGAGAAGGGAATGATGGACTACCTATATGCAAATTGTGAGTCTTATAGTTATTCACTCGCACTCCTTGTATCACAGATTGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGGGGTATTTTCCTATGTTTTCTACAAATTGTTTTCATGACCAAAAGGGTTCAAAATTGAAAGAACACCAAAGATCCCCATTTAGAGACTACTGTGTACTCATAAAGGGACCTATGCTGATGACGGTCTTGTTGATAGAGCTACCCAGGTACCTGAGATCAGGAGAATGCCAATTGAGGAACTTTGCCTTCAGTCAACAAAACCTAGTTGCAGATCCCCCTTTTGAGATTACGAGCTCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

151

Amino Acids

17.4

Weight (kDa)

6.82

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	357
AclWI	GGATC	2 cut(s)	276, 416
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	2 cut(s)	306, 359
AgsI	TTSAA	2 cut(s)	261, 268
AjnI	CCWGG	1 cut(s)	353
AluBI	AGCT	3 cut(s)	175, 349, 444
AluI	AGCT	3 cut(s)	175, 349, 444
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	276, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp718I	GGTACC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	317
BaeI	ACNNNNGTAYC	2 cut(s)	341, 374
BanI	GGYRCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	446
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	318, 359
BmrFI	CCNGG	1 cut(s)	355
BpuEI	CTTGAG	2 cut(s)	197, 430
BsaJI	CCNNGG	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	281, 365, 421
BspCNI	CTCAG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	318, 359
BspPI	GGATC	2 cut(s)	276, 416
BspT107I	GGYRCC	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	3 cut(s)	281, 365, 421
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	302, 334
BstDEI	CTNAG	1 cut(s)	362
BstKTI	GATC	3 cut(s)	284, 368, 424
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	3 cut(s)	281, 365, 421
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	281, 421
BstYI	RGATCY	2 cut(s)	281, 421
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	305, 358
CviAII	CATG	2 cut(s)	245, 453
CviJI	RGCY	4 cut(s)	175, 206, 349, 444
CviKI_1	RGCY	4 cut(s)	175, 206, 349, 444
CviQI	GTAC	2 cut(s)	305, 358
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	3 cut(s)	283, 367, 423
DpnII	GATC	3 cut(s)	281, 365, 421
Ecl136II	GAGCTC	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	446
FaeI	CATG	2 cut(s)	248, 456
FaiI	YATR	8 cut(s)	109, 111, 129, 224, 246, 311, 323, 454
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	2 cut(s)	244, 452
FriOI	GRGCYC	1 cut(s)	446
FspBI	CTAG	1 cut(s)	413
Hin1II	CATG	2 cut(s)	248, 456
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	305, 404
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	3 cut(s)	245, 369, 447
Hpy8I	GTNNAC	2 cut(s)	305, 404
HpyAV	CCTTC	2 cut(s)	82, 406
HpyCH4III	ACNGT	2 cut(s)	302, 334
HpyCH4V	TGCA	3 cut(s)	34, 113, 419
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	2 cut(s)	248, 456
KpnI	GGTACC	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	281, 365, 421
LpnPI	CCDG	6 cut(s)	12, 194, 340, 354, 367, 374
MaeI	CTAG	1 cut(s)	413
MalI	GATC	3 cut(s)	283, 367, 423
MboI	GATC	3 cut(s)	281, 365, 421
MboII	GAAGA	1 cut(s)	67
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	2 cut(s)	281, 421
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	4 cut(s)	115, 235, 263, 380
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	30, 46
MnlI	CCTC	2 cut(s)	55, 378
MslI	CAYNNNNRTG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	355
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	281, 365, 421
NlaIII	CATG	2 cut(s)	248, 456
NlaIV	GGNNCC	2 cut(s)	318, 359
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	1 cut(s)	380
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	446
Psp5II	RGGWCCY	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	318, 359
PspPI	GGNCC	1 cut(s)	317
PspPPI	RGGWCCY	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	281, 421
RsaI	GTAC	2 cut(s)	306, 359
RsaNI	GTAC	2 cut(s)	305, 358
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	446
Sau3AI	GATC	3 cut(s)	281, 365, 421
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	9 cut(s)	66, 108, 177, 322, 351, 359, 363, 414, 446
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	176, 445
SmoI	CTYRAG	2 cut(s)	176, 445
Sse9I	AATT	4 cut(s)	115, 235, 263, 380
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	302, 334
TasI	AATT	4 cut(s)	115, 235, 263, 380
TatI	WGTACW	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	17, 233
VpaK11BI	GGWCC	1 cut(s)	317
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.