RLG00000030557

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002196
Physical Location & Seq
Forward (+)
63462051 .. 63462398
348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030557

Sequence Viewer

Length: 348 bp
ATGGGCCAGGCCGGCCTCACCCTCACCGCGTCGCTCCTCTCTCCTCCTCCTCCTCCGCCGTCCGATCAACCCCACTTGAACGTCACCGTCGACGACGACGACGACAACGGCAACAGCAGCTTCCACAACCCGTTTGCGTTTCCCGTATCGACGACGGCGGATCCGTTCAAGAACCATACTTTGAAAATCGAAGGGGTACGAGTGGTTAAAGATCGGGGTTTGCTTCCCCATCGCGATTATGAGGCTTGTGATCTTTGGGGTTTCGTTGCTGATTGGGTTTGTGGCCACCAAATTGGCTCTGTTGGGATGGAAGGAGAGGAAGAACCCTATGCCCAAGTGGAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.5

Weight (kDa)

4.41

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 29, 234
AciI CCGC 3 cut(s) 27, 56, 158
AclWI GGATC 2 cut(s) 155, 168
AcoI YGGCCR 1 cut(s) 283
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 79, 169, 184
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
AlwI GGATC 2 cut(s) 155, 168
AoxI GGCC 4 cut(s) 4, 9, 13, 283
ApeKI GCWGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 10, 16, 76
BalI TGGCCA 1 cut(s) 285
BamHI GGATCC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 237, 301
BceAI ACGGC 3 cut(s) 43, 124, 171
BciT130I CCWGG 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 12
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 1 cut(s) 11
BseBI CCWGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 340
BseRI GAGGAG 5 cut(s) 26, 33, 36, 39, 42
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 29, 234
BshFI GGCC 4 cut(s) 6, 11, 15, 285
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 340
BsnI GGCC 4 cut(s) 6, 11, 15, 285
Bsp143I GATC 4 cut(s) 64, 160, 211, 250
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 3 cut(s) 27, 56, 158
BspANI GGCC 4 cut(s) 6, 11, 15, 285
BspFNI CGCG 2 cut(s) 29, 234
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 2 cut(s) 155, 168
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 4 cut(s) 64, 160, 211, 250
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 2 cut(s) 29, 234
BstKTI GATC 4 cut(s) 67, 163, 214, 253
BstMBI GATC 4 cut(s) 64, 160, 211, 250
BstMWI GCNNNNNNNGC 2 cut(s) 12, 117
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstUI CGCG 2 cut(s) 29, 234
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 160
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 4 cut(s) 6, 11, 15, 285
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 312
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 197
CviJI RGCY 7 cut(s) 6, 11, 15, 120, 245, 285, 297
CviKI_1 RGCY 7 cut(s) 6, 11, 15, 120, 245, 285, 297
CviQI GTAC 1 cut(s) 197
DpnI GATC 4 cut(s) 66, 162, 213, 252
DpnII GATC 4 cut(s) 64, 160, 211, 250
EaeI YGGCCR 1 cut(s) 283
EciI GGCGGA 2 cut(s) 45, 173
EcoRII CCWGG 1 cut(s) 6
FaiI YATR 3 cut(s) 177, 240, 330
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 319
FseI GGCCGGCC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 4 cut(s) 6, 11, 15, 285
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HpaII CCGG 1 cut(s) 12
HphI GGTGA 3 cut(s) 10, 16, 76
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 169, 233
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 8 cut(s) 34, 92, 95, 98, 101, 104, 154, 157
HpyAV CCTTC 2 cut(s) 185, 305
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 117
HpySE526I ACGT 1 cut(s) 81
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 4 cut(s) 64, 160, 211, 250
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 2 cut(s) 20, 25
Lsp1109I GCAGC 1 cut(s) 129
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 82
MalI GATC 4 cut(s) 66, 162, 213, 252
MboI GATC 4 cut(s) 64, 160, 211, 250
MboII GAAGA 1 cut(s) 332
MflI RGATCY 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 1 cut(s) 291
MluNI TGGCCA 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 285
MroNI GCCGGC 1 cut(s) 11
MscI TGGCCA 1 cut(s) 285
MseI TTAA 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 285
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 2 cut(s) 29, 234
MwoI GCNNNNNNNGC 2 cut(s) 12, 117
NaeI GCCGGC 1 cut(s) 13
NdeII GATC 4 cut(s) 64, 160, 211, 250
NgoMIV GCCGGC 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 82
NruI TCGCGA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 4 cut(s) 87, 96, 99, 161
PdiI GCCGGC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 160
RigI GGCCGGCC 1 cut(s) 15
RruI TCGCGA 1 cut(s) 234
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 4 cut(s) 64, 160, 211, 250
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 8
SetI ASST 3 cut(s) 84, 122, 345
SfiI GGCCNNNNNGGCC 1 cut(s) 12
SgrDI CGTCGACG 1 cut(s) 89
Sse9I AATT 1 cut(s) 291
SsiI CCGC 3 cut(s) 27, 56, 158
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 90, 149, 189
TasI AATT 1 cut(s) 291
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.