AT1G26530

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002196
Physical Location & Seq
Forward (+)
9165360 .. 9167570
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26530.1

Sequence Viewer

Length: 537 bp
ATGGGAAGGACAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGGTTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAATGCACTCCTTGTATTACGGACTGATTGCAAAAGATCCACGATTTGAAAGACTACCTTGTGTACTCAAAGGGACATATGCTGATGACTGTCTTGTGGACAGAGTTACTCAGCATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTCGCAAGATTCCTGGTGTACCAATCATGTATGTGACACAACGCAAGTACTCAATAGAGAAACTGCCTGAAGCAACAATCGGTGGAGCTCCAAGATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

178

Amino Acids

20.6

Weight (kDa)

9.86

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 101 - 166 1.7e-20 Fcf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 129
AclWI GGATC 1 cut(s) 305
AcuI CTGAAG 2 cut(s) 129, 525
AfaI GTAC 4 cut(s) 270, 339, 456, 485
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 67, 323
AjnI CCWGG 1 cut(s) 448
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AluBI AGCT 3 cut(s) 62, 407, 524
AluI AGCT 3 cut(s) 62, 407, 524
Alw21I GWGCWC 1 cut(s) 526
AlwI GGATC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 526
BccI CCATC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 450
BciVI GTATCC 1 cut(s) 196
BcnI CCSGG 1 cut(s) 191
BfaI CTAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 196
BglII AGATCT 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 2 cut(s) 191, 450
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 191, 450
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 1 cut(s) 450
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 3 cut(s) 241, 310, 421
BspCNI CTCAG 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 1 cut(s) 305
BssMI GATC 3 cut(s) 241, 310, 421
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 384
BstKTI GATC 3 cut(s) 244, 313, 424
BstMBI GATC 3 cut(s) 241, 310, 421
BstNI CCWGG 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 189, 448
BstX2I RGATCY 2 cut(s) 310, 421
BstYI RGATCY 2 cut(s) 310, 421
BsuI GTATCC 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 4 cut(s) 269, 338, 455, 484
CviAII CATG 1 cut(s) 463
CviJI RGCY 5 cut(s) 54, 62, 151, 407, 524
CviKI_1 RGCY 5 cut(s) 54, 62, 151, 407, 524
CviQI GTAC 4 cut(s) 269, 338, 455, 484
DdeI CTNAG 1 cut(s) 384
DpnI GATC 3 cut(s) 243, 312, 423
DpnII GATC 3 cut(s) 241, 310, 421
Ecl136II GAGCTC 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 2 cut(s) 129, 525
EcoICRI GAGCTC 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 526
FaeI CATG 1 cut(s) 466
FaiI YATR 6 cut(s) 352, 354, 390, 401, 464, 468
FalI AAGNNNNNCTT 4 cut(s) 127, 159, 316, 348
FaqI GGGAC 1 cut(s) 361
FatI CATG 1 cut(s) 462
FauNDI CATATG 1 cut(s) 352
FriOI GRGCYC 1 cut(s) 526
FspBI CTAG 1 cut(s) 171
HapII CCGG 1 cut(s) 190
Hin1II CATG 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 3 cut(s) 91, 436, 445
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 3 cut(s) 338, 373, 455
Hpy188I TCNGA 2 cut(s) 90, 123
Hpy188III TCNNGA 2 cut(s) 229, 245
Hpy8I GTNNAC 3 cut(s) 338, 373, 455
HpyAV CCTTC 4 cut(s) 97, 153, 244, 426
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 32, 280, 305
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 466
Kzo9I GATC 3 cut(s) 241, 310, 421
LmnI GCTCC 2 cut(s) 521, 529
LpnPI CCDG 6 cut(s) 132, 203, 242, 435, 462, 516
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 379, 469
MalI GATC 3 cut(s) 243, 312, 423
MboI GATC 3 cut(s) 241, 310, 421
MboII GAAGA 1 cut(s) 52
MflI RGATCY 2 cut(s) 310, 421
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 1 cut(s) 208
MnlI CCTC 5 cut(s) 30, 73, 76, 119, 192
MslI CAYNNNNRTG 1 cut(s) 467
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 2 cut(s) 191, 450
MvaI CCWGG 1 cut(s) 450
NciI CCSGG 1 cut(s) 191
NdeI CATATG 1 cut(s) 352
NdeII GATC 3 cut(s) 241, 310, 421
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 469
PfeI GAWTC 3 cut(s) 91, 436, 445
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 526
Psp1406I AACGTT 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PsuI RGATCY 2 cut(s) 310, 421
RsaI GTAC 4 cut(s) 270, 339, 456, 485
RsaNI GTAC 4 cut(s) 269, 338, 455, 484
RseI CAYNNNNRTG 1 cut(s) 467
SacI GAGCTC 1 cut(s) 526
Sau3AI GATC 3 cut(s) 241, 310, 421
Sau96I GGNCC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 191, 450
SduI GDGCHC 1 cut(s) 526
SetI ASST 8 cut(s) 22, 64, 87, 111, 132, 334, 409, 526
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 2 cut(s) 189, 448
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 132
TasI AATT 1 cut(s) 208
TatI WGTACW 2 cut(s) 337, 483
TfiI GAWTC 3 cut(s) 91, 436, 445
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 53, 202, 388
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 106
XspI CTAG 1 cut(s) 171
ZrmI AGTACT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.