Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

56266603 .. 56268220

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTATTGCAAGTTTGAATTCTCTGGGATCATTAGGCTTGGAGGTTCTGGAGGAGGGTCAGCGTCGGGTTTTGGATCGTAACTTTGAGACTATGGTGGTCATAGGCATAGTGTTTCGCTCGGTCCTCTTCGAGTGTAGTCGAGGTGGTGCAACATCGGCTGGGGGTGCTAGGATAGGTGGTGGCGGTAGTGGCAAGGGTGGTGGTTGTGGTGTTGCAGATGTGCGTGTGTCTGCACTAGCAGAAGAGGCCGGCCTCACCCTCACCGCGCTGCTCCTCTCTCCTCCTCCTCCTCCGCCGTCCGATCAACCTCACTTGAACGTCACCGTCCACCACGACGACTACAACGGCAACGGCAACTTCTGCAACCAGTTTGCGTTTCTCGGGTCGGGCGGGTTTAAGGTGCCCGTATCAAAGACGACGGATCCGTTCAAGAACCATACTTTGAAAATCGGAGGGGTTTACGAGTGGTTAAAGATCGGGGTTTGCTTCCCCATCGCGATTTTGAGGCTTGTGATCTTTAGGGTTTCGTTGCTGATTGGGTTTGTGGCCACCAAATTGGCTCTGTTGGCTGAAGAAGAAGAGAGGATTGTGATCTTTGGCGTTGCTGAAGCTTATTGTTCTTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0050200 GO:0071617 GO:0071618 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase EF-hand_1 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

211

Amino Acids

22.12

Weight (kDa)

6.08

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	403
AccII	CGCG	2 cut(s)	269, 500
AciI	CCGC	4 cut(s)	186, 267, 296, 393
AclWI	GGATC	4 cut(s)	37, 84, 419, 432
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	2 cut(s)	594, 630
AgsI	TTSAA	4 cut(s)	19, 319, 433, 448
AluBI	AGCT	1 cut(s)	614
AluI	AGCT	1 cut(s)	614
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	4 cut(s)	37, 84, 419, 432
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	249, 253, 549
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	3 cut(s)	250, 256, 316
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	3 cut(s)	283, 364, 370
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	171, 239
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	405, 426
BpmI	CTGGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	593
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	593
BseJI	GATNNNNATC	1 cut(s)	593
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	6 cut(s)	68, 266, 273, 276, 279, 282
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	1 cut(s)	258
BseYI	CCCAGC	1 cut(s)	161
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	2 cut(s)	269, 500
BshFI	GGCC	3 cut(s)	251, 255, 551
BshNI	GGYRCC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	251, 255, 551
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	7 cut(s)	29, 76, 304, 424, 477, 516, 594
Bsp68I	TCGCGA	1 cut(s)	500
BspACI	CCGC	4 cut(s)	186, 267, 296, 393
BspANI	GGCC	3 cut(s)	251, 255, 551
BspFNI	CGCG	2 cut(s)	269, 500
BspLI	GGNNCC	2 cut(s)	405, 426
BspPI	GGATC	4 cut(s)	37, 84, 419, 432
BspT107I	GGYRCC	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	7 cut(s)	29, 76, 304, 424, 477, 516, 594
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	3 cut(s)	134, 240, 576
BstAPI	GCANNNNNTGC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	253
BstFNI	CGCG	2 cut(s)	269, 500
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	7 cut(s)	32, 79, 307, 427, 480, 519, 597
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	7 cut(s)	29, 76, 304, 424, 477, 516, 594
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 167, 192, 248, 363, 569
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	2 cut(s)	269, 500
BstV1I	GCAGC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	251, 255, 551
BtgZI	GCGATG	1 cut(s)	481
BtuMI	TCGCGA	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
DpnI	GATC	7 cut(s)	31, 78, 306, 426, 479, 518, 596
DpnII	GATC	7 cut(s)	29, 76, 304, 424, 477, 516, 594
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	3 cut(s)	134, 240, 576
EarI	CTCTTC	3 cut(s)	134, 240, 576
EciI	GGCGGA	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	594, 630
Eco88I	CYCGRG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	19
FaiI	YATR	4 cut(s)	95, 104, 110, 441
FauI	CCCGC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	272
FseI	GGCCGGCC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	2 cut(s)	171, 239
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	251, 255, 551
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	612
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	3 cut(s)	250, 256, 316
Hpy166II	GTNNAC	2 cut(s)	331, 463
Hpy188I	TCNGA	2 cut(s)	304, 455
Hpy188III	TCNNGA	3 cut(s)	50, 433, 499
Hpy8I	GTNNAC	2 cut(s)	331, 463
Hpy99I	CGWCG	3 cut(s)	69, 341, 424
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	5 cut(s)	11, 152, 218, 236, 366
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 167, 192, 248, 363, 569
HpySE526I	ACGT	1 cut(s)	321
HspAI	GCGC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	7 cut(s)	29, 76, 304, 424, 477, 516, 594
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	5 cut(s)	11, 35, 147, 265, 383
Lsp1109I	GCAGC	1 cut(s)	258
MaeI	CTAG	2 cut(s)	171, 239
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	80, 322
MalI	GATC	7 cut(s)	31, 78, 306, 426, 479, 518, 596
MboI	GATC	7 cut(s)	29, 76, 304, 424, 477, 516, 594
MboII	GAAGA	5 cut(s)	121, 257, 587, 590, 593
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	2 cut(s)	19, 557
MluNI	TGGCCA	1 cut(s)	551
Mox20I	TGGCCA	1 cut(s)	551
MroNI	GCCGGC	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	2 cut(s)	399, 473
Msp20I	TGGCCA	1 cut(s)	551
MspI	CCGG	1 cut(s)	252
MvnI	CGCG	2 cut(s)	269, 500
MwoI	GCNNNNNNNGC	6 cut(s)	158, 167, 192, 248, 363, 569
NaeI	GCCGGC	1 cut(s)	253
NdeII	GATC	7 cut(s)	29, 76, 304, 424, 477, 516, 594
NgoMIV	GCCGGC	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	405, 426
NmuCI	GTSAC	1 cut(s)	322
NruI	TCGCGA	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PdiI	GCCGGC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	405, 426
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	424
RigI	GGCCGGCC	1 cut(s)	255
RruI	TCGCGA	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	399, 473
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	7 cut(s)	29, 76, 304, 424, 477, 516, 594
Sau96I	GGNCC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	7 cut(s)	48, 148, 181, 313, 324, 405, 616
SinI	GGWCC	1 cut(s)	124
Sse9I	AATT	2 cut(s)	19, 557
SsiI	CCGC	4 cut(s)	186, 267, 296, 393
SspMI	CTAG	2 cut(s)	171, 239
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	132, 142
TaqII	GACCGA	1 cut(s)	112
TasI	AATT	2 cut(s)	19, 557
Tru1I	TTAA	2 cut(s)	399, 473
Tru9I	TTAA	2 cut(s)	399, 473
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	322
TspGWI	ACGGA	2 cut(s)	417, 437
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	19
XspI	CTAG	2 cut(s)	171, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.