Rh1CG258900

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002196
Physical Location & Seq
Reverse (-)
52352987 .. 52356284
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG258900.1

Sequence Viewer

Length: 336 bp
ATGATGGACTGCCTATATGCAAAGTGCACTCCTTGTATCACAGATTGTGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGGGTGGCTCTGAGGATTGCCAAAGATCCCCGTTTCGAGAGACTACTGTGTACTCATAAAGGAACCTATGCTGATGACTGTCTTGTTGATAGAGTCACCCAGCATAAATGCTACATTGTCGCTACATGTGATAGAGATTTAAAGCGAAGGATCCGAAAGGTCCCTGGTGTGCCGATCATGTATATCACTCAACACAAGTACTCAATTGAACGATTGCCTGAAGCAACAATTGGTGGAGCTCCAAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

111

Amino Acids

12.84

Weight (kDa)

9.07

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 3 - 99 3.1e-37 Fcf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 104, 229, 242
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 136, 284
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 1 cut(s) 293
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 2 cut(s) 61, 323
AluI AGCT 2 cut(s) 61, 323
Alw21I GWGCWC 2 cut(s) 29, 325
Alw26I GTCTC 1 cut(s) 118
Alw44I GTGCAC 1 cut(s) 25
AlwI GGATC 3 cut(s) 104, 229, 242
ApaLI GTGCAC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 29
BamHI GGATCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 325
Bbv12I GWGCWC 2 cut(s) 29, 325
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 148, 236, 246
BmrFI CCNGG 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 247, 326
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 247, 326
BseMII CTCAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 183
BsiHKAI GWGCWC 2 cut(s) 29, 325
BslFI GGGAC 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 29, 325
Bsp143I GATC 3 cut(s) 109, 234, 258
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 148, 236, 246
BspPI GGATC 3 cut(s) 104, 229, 242
BssECI CCNNGG 2 cut(s) 247, 326
BssMI GATC 3 cut(s) 109, 234, 258
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 132, 164
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 3 cut(s) 112, 237, 261
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 3 cut(s) 109, 234, 258
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 29
BstX2I RGATCY 2 cut(s) 109, 234
BstYI RGATCY 2 cut(s) 109, 234
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 135, 283
CviAII CATG 2 cut(s) 210, 262
CviJI RGCY 3 cut(s) 61, 92, 323
CviKI_1 RGCY 3 cut(s) 61, 92, 323
CviQI GTAC 2 cut(s) 135, 283
DdeI CTNAG 1 cut(s) 95
DpnI GATC 3 cut(s) 111, 236, 260
DpnII GATC 3 cut(s) 109, 234, 258
DraI TTTAAA 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 213, 265
FaiI YATR 8 cut(s) 16, 18, 141, 153, 189, 211, 263, 267
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 209, 261
FriOI GRGCYC 1 cut(s) 325
GsaI CCCAGC 1 cut(s) 187
Hin1II CATG 2 cut(s) 213, 265
HinfI GANTC 1 cut(s) 177
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 27, 135
Hpy188I TCNGA 3 cut(s) 78, 96, 239
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 27, 135
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 2 cut(s) 132, 164
HpyCH4V TGCA 2 cut(s) 20, 27
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 2 cut(s) 213, 265
Kzo9I GATC 3 cut(s) 109, 234, 258
LmnI GCTCC 2 cut(s) 320, 328
LpnPI CCDG 4 cut(s) 197, 234, 261, 315
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 111, 236, 260
MboI GATC 3 cut(s) 109, 234, 258
MfeI CAATTG 2 cut(s) 288, 312
MflI RGATCY 2 cut(s) 109, 234
MhlI GDGCHC 2 cut(s) 29, 325
MluCI AATT 2 cut(s) 288, 312
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 1 cut(s) 90
MseI TTAA 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 2 cut(s) 288, 312
MvaI CCWGG 1 cut(s) 249
NdeII GATC 3 cut(s) 109, 234, 258
NlaIII CATG 2 cut(s) 213, 265
NlaIV GGNNCC 3 cut(s) 148, 236, 246
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 213
PciI ACATGT 1 cut(s) 209
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 244
PscI ACATGT 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 325
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 148, 236, 246
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 2 cut(s) 109, 234
RsaI GTAC 2 cut(s) 136, 284
RsaNI GTAC 2 cut(s) 135, 283
SacI GAGCTC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 224
Sau3AI GATC 3 cut(s) 109, 234, 258
Sau96I GGNCC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 2 cut(s) 29, 325
SetI ASST 5 cut(s) 63, 152, 246, 325, 332
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 2 cut(s) 288, 312
SstI GAGCTC 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 2 cut(s) 132, 164
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 288, 312
TatI WGTACW 2 cut(s) 134, 282
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
VneI GTGCAC 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 244
XceI RCATGY 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.