Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001428.1

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

75467 .. 75750

Gene Structure 284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001428.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atgctctgcgttgagttccaaacggcgttatcatcaaggccatggcaggattctcaagaagacgatcaggctccgatcaccgtcgctgatttcagcaaccaggaactgataagtttggagatggggagacaaatcccttcgatttctttggtggcggaaaaggactcggcgtcggtgcggttagataatctggtagagcaggcggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

69

Amino Acids

7.67

Weight (kDa)

4.05

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	155, 178, 203
AcyI	GRCGYC	1 cut(s)	170
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	66
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	101
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	64, 75
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	3 cut(s)	155, 178, 203
BspANI	GGCC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	64, 75
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	67, 78
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	64, 75
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	201
CaiI	CAGNNNCTG	1 cut(s)	106
CseI	GACGC	1 cut(s)	159
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	2 cut(s)	40, 71
CviKI_1	RGCY	2 cut(s)	40, 71
DpnI	GATC	2 cut(s)	66, 77
DpnII	GATC	2 cut(s)	64, 75
DriI	GACNNNNNGTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	45
FaiI	YATR	1 cut(s)	43
FatI	CATG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	45
HinfI	GANTC	2 cut(s)	50, 164
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	56
Hpy99I	CGWCG	2 cut(s)	86, 175
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	64, 75
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	6 cut(s)	32, 53, 86, 113, 176, 185
MalI	GATC	2 cut(s)	66, 77
MboI	GATC	2 cut(s)	64, 75
MboII	GAAGA	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	64, 75
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	64, 75
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	101
SgeI	CNNG	9 cut(s)	48, 54, 59, 68, 80, 112, 113, 178, 203
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
SsiI	CCGC	3 cut(s)	155, 178, 203
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.