Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

11059873 .. 11062182

Gene Structure 2310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10270.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGAGAGCTAAAAAAGGCCCGAAATTTGCAGTCATGAAGAAGGTGGTCACCTCCAAAGCAATTAAAAGGTGTTTTGAATTCAGCTACAAAGAAGCGGTTTTGAATCCGAACAAGAAGGACCTCACGAAAGAAAAGCTACCCAGAAACGTGCCGAATGTTTCTTCTGCGCTGTTCTTTAAACACAACACTGCTTTGGGACCGCCTTACCGGGTTTTGGTTGATACCAACTTCATCAATTTCTCTATCCAGAATAAGTTGGATTTGGAGAAAGGAATGATGGATTGCCTGTACGCAAAGTGCACTCCTTGTATCACGGATTGTGTAATGGCAGAGCTTGAGAAGTTAGGTCAGAAATATCGTGTGGCTCTGAGGATTGCCAAGGATCCTCGTTTTGAGAGACTACTCTGCACTCATAAAGGAACCTATGCTGATGACTGTATTGTTGAAAGAGTTACCCAGCACAAATGCTACATTGTTGCTACATGCGATCGAGATTTAAAGCGAAGGATCCGAAAGGTCCCTGGTGTGCCAATCATGTACATCACTCAACACAAGTATTCAATTGAGCGGTTGCCAGAAGCAACCATAGGTGGAGCTCCAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

204

Amino Acids

23.26

Weight (kDa)

9.69

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	571
AciI	CCGC	3 cut(s)	98, 203, 571
AclWI	GGATC	4 cut(s)	380, 393, 505, 518
AcsI	RAATTY	2 cut(s)	26, 80
AfaI	GTAC	2 cut(s)	293, 542
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	80, 106, 449, 564
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	5 cut(s)	11, 87, 139, 337, 599
AluI	AGCT	5 cut(s)	11, 87, 139, 337, 599
Alw21I	GWGCWC	2 cut(s)	305, 601
Alw26I	GTCTC	1 cut(s)	394
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	4 cut(s)	380, 393, 505, 518
AoxI	GGCC	1 cut(s)	19
ApaLI	GTGCAC	1 cut(s)	301
ApoI	RAATTY	2 cut(s)	26, 80
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	4 cut(s)	20, 121, 200, 520
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	3 cut(s)	121, 200, 520
BaeGI	GKGCMC	1 cut(s)	305
BamHI	GGATCC	2 cut(s)	385, 510
BanII	GRGCYC	1 cut(s)	601
Bbv12I	GWGCWC	2 cut(s)	305, 601
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	212, 525
Bme18I	GGWCC	3 cut(s)	121, 200, 520
BmgT120I	GGNCC	4 cut(s)	20, 121, 200, 520
BmiI	GGNNCC	5 cut(s)	201, 387, 424, 512, 522
BmrFI	CCNGG	2 cut(s)	212, 525
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	381, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	381, 523
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	459
BsgI	GTGCAG	1 cut(s)	394
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	493
BsiHKAI	GWGCWC	2 cut(s)	305, 601
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	213, 506
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	213, 506
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	305, 601
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	385, 490, 510
BspACI	CCGC	3 cut(s)	98, 203, 571
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	5 cut(s)	201, 387, 424, 512, 522
BspPI	GGATC	4 cut(s)	380, 393, 505, 518
BsrBI	CCGCTC	1 cut(s)	571
BsrGI	TGTACA	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	381, 523
BssMI	GATC	3 cut(s)	385, 490, 510
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	371
BstEII	GGTNACC	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	3 cut(s)	388, 493, 513
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	3 cut(s)	385, 490, 510
BstMCI	CGRYCG	1 cut(s)	493
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	489
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	210, 523
BstSLI	GKGCMC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	385, 510
BstYI	RGATCY	2 cut(s)	385, 510
BsuRI	GGCC	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	4 cut(s)	20, 121, 200, 520
Csp6I	GTAC	2 cut(s)	292, 541
CviAII	CATG	3 cut(s)	37, 486, 538
CviJI	RGCY	7 cut(s)	11, 21, 87, 139, 337, 368, 599
CviKI_1	RGCY	7 cut(s)	11, 21, 87, 139, 337, 368, 599
CviQI	GTAC	2 cut(s)	292, 541
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	3 cut(s)	387, 492, 512
DpnII	GATC	3 cut(s)	385, 490, 510
DraI	TTTAAA	2 cut(s)	181, 501
Ecl136II	GAGCTC	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	3 cut(s)	121, 200, 520
Eco53kI	GAGCTC	1 cut(s)	599
Eco91I	GGTNACC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	599
EcoO109I	RGGNCCY	2 cut(s)	121, 520
EcoO65I	GGTNACC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	40, 489, 541
FaiI	YATR	6 cut(s)	38, 417, 429, 487, 539, 590
FaqI	GGGAC	2 cut(s)	213, 506
FatI	CATG	3 cut(s)	36, 485, 537
FriOI	GRGCYC	1 cut(s)	601
GlaI	GCGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	463
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	40, 489, 541
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	4 cut(s)	111, 354, 372, 515
Hpy188III	TCNNGA	4 cut(s)	37, 127, 250, 494
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	3 cut(s)	37, 112, 501
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	32, 303, 411
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	40, 489, 541
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	385, 490, 510
LmnI	GCTCC	2 cut(s)	596, 604
LpnPI	CCDG	8 cut(s)	157, 224, 263, 302, 473, 510, 537, 591
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	49, 454
MalI	GATC	3 cut(s)	387, 492, 512
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	3 cut(s)	385, 490, 510
MboII	GAAGA	2 cut(s)	52, 156
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	2 cut(s)	385, 510
MhlI	GDGCHC	2 cut(s)	305, 601
MluCI	AATT	5 cut(s)	26, 63, 80, 238, 564
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	4 cut(s)	64, 134, 366, 399
MseI	TTAA	3 cut(s)	66, 180, 500
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	212, 525
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	525
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	3 cut(s)	385, 490, 510
NlaIII	CATG	3 cut(s)	40, 489, 541
NlaIV	GGNNCC	5 cut(s)	201, 387, 424, 512, 522
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	489
PagI	TCATGA	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	106
Ple19I	CGATCG	1 cut(s)	493
PpuMI	RGGWCCY	2 cut(s)	121, 520
Psp124BI	GAGCTC	1 cut(s)	601
Psp5II	RGGWCCY	2 cut(s)	121, 520
Psp6I	CCWGG	1 cut(s)	523
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	5 cut(s)	201, 387, 424, 512, 522
PspPI	GGNCC	4 cut(s)	20, 121, 200, 520
PspPPI	RGGWCCY	2 cut(s)	121, 520
PsuI	RGATCY	2 cut(s)	385, 510
PvuI	CGATCG	1 cut(s)	493
RsaI	GTAC	2 cut(s)	293, 542
RsaNI	GTAC	2 cut(s)	292, 541
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	3 cut(s)	66, 180, 500
Sau3AI	GATC	3 cut(s)	385, 490, 510
Sau96I	GGNCC	4 cut(s)	20, 121, 200, 520
ScrFI	CCNGG	2 cut(s)	212, 525
SduI	GDGCHC	2 cut(s)	305, 601
SinI	GGWCC	3 cut(s)	121, 200, 520
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	26, 63, 80, 238, 564
SsiI	CCGC	3 cut(s)	98, 203, 571
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	2 cut(s)	210, 523
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	493
TasI	AATT	5 cut(s)	26, 63, 80, 238, 564
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	3 cut(s)	66, 180, 500
Tru9I	TTAA	3 cut(s)	66, 180, 500
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	53, 223
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	3 cut(s)	121, 200, 520
XapI	RAATTY	2 cut(s)	26, 80
XceI	RCATGY	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.