Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

17892791 .. 17897167

Gene Structure 4377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1073500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGGAGAGCTAAAAAAGGCCCGAAATTTGCAGTCATGAAGAAGGTGGTCACCTCCAAAGCAATTAAAAGCTACAAAGAGGCGGTTTTGAATCCGAACAAGAAGGATCTCACGAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCCGCGCTGTTCTTTAAACACAACACTGCTTTGGGACCGCCTTATCGGGTTTTGGTTGATACCAACTTCATCAATTTCTCTATCCAGAATAAGTTGGATTTGGAGAAAGGAATGATGGATTGCTTGTACGCAAAGTGCACTCCTTGTATCACGGATTGTGTAATGGCAGAGCTTGAGAAATTAGGTCAGAAATATCGTGTGGCTCTGAGGATTGCTAAGGATCCTCGTTTTGAGAGACTACTCTGCACTCATAAAGGAACCTATGCTGATGACTGTATTGTTGAAAGAGTTACCCAGCACAAATGCTACATTGTTGCTACATGCGATCGAGATTTAAAGAGAAGGATCCGAAAGGTCCCTGGTGTGCCAATCATGTACATCACTCAACACAAGTATTCAATTGAGCGGTTGCCAGAAGCAACCATAGGTGGAGCTCCAAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

199

Amino Acids

22.58

Weight (kDa)

9.73

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_9	PF18477	67 - 179	4e-07	PIN like domain
Fcf1	PF04900	90 - 186	2e-36	Fcf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	556
AccII	CGCG	1 cut(s)	155
AciI	CCGC	4 cut(s)	83, 153, 188, 556
AclWI	GGATC	5 cut(s)	114, 365, 378, 490, 503
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	2 cut(s)	278, 527
AgsI	TTSAA	3 cut(s)	91, 434, 549
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	5 cut(s)	11, 72, 124, 322, 584
AluI	AGCT	5 cut(s)	11, 72, 124, 322, 584
Alw21I	GWGCWC	2 cut(s)	290, 586
Alw26I	GTCTC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	286
AlwI	GGATC	5 cut(s)	114, 365, 378, 490, 503
AoxI	GGCC	1 cut(s)	19
ApaLI	GTGCAC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	20, 185, 505
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	185, 505
BaeGI	GKGCMC	1 cut(s)	290
BamHI	GGATCC	2 cut(s)	370, 495
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	2 cut(s)	290, 586
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	2 cut(s)	185, 505
BmgT120I	GGNCC	3 cut(s)	20, 185, 505
BmiI	GGNNCC	5 cut(s)	186, 372, 409, 497, 507
BmrFI	CCNGG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	508, 587
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	508, 587
BseMII	CTCAG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	2 cut(s)	290, 586
BslFI	GGGAC	2 cut(s)	198, 491
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	198, 491
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	290, 586
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	4 cut(s)	106, 370, 475, 495
BspACI	CCGC	4 cut(s)	83, 153, 188, 556
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	5 cut(s)	186, 372, 409, 497, 507
BspPI	GGATC	5 cut(s)	114, 365, 378, 490, 503
BsrBI	CCGCTC	1 cut(s)	556
BsrGI	TGTACA	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	508, 587
BssMI	GATC	4 cut(s)	106, 370, 475, 495
BssT1I	CCWWGG	1 cut(s)	587
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	356, 366
BstEII	GGTNACC	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	4 cut(s)	109, 373, 478, 498
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	4 cut(s)	106, 370, 475, 495
BstMCI	CGRYCG	1 cut(s)	478
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	474
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	290
BstUI	CGCG	1 cut(s)	155
BstX2I	RGATCY	3 cut(s)	106, 370, 495
BstYI	RGATCY	3 cut(s)	106, 370, 495
BsuRI	GGCC	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	20, 185, 505
Csp6I	GTAC	2 cut(s)	277, 526
CviAII	CATG	3 cut(s)	37, 471, 523
CviJI	RGCY	7 cut(s)	11, 21, 72, 124, 322, 353, 584
CviKI_1	RGCY	7 cut(s)	11, 21, 72, 124, 322, 353, 584
CviQI	GTAC	2 cut(s)	277, 526
DdeI	CTNAG	2 cut(s)	356, 366
DpnI	GATC	4 cut(s)	108, 372, 477, 497
DpnII	GATC	4 cut(s)	106, 370, 475, 495
DraI	TTTAAA	2 cut(s)	166, 486
Ecl136II	GAGCTC	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	185, 505
Eco53kI	GAGCTC	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	505
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	587
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	3 cut(s)	40, 474, 526
FaiI	YATR	6 cut(s)	38, 402, 414, 472, 524, 575
FaqI	GGGAC	2 cut(s)	198, 491
FatI	CATG	3 cut(s)	36, 470, 522
FriOI	GRGCYC	1 cut(s)	586
GlaI	GCGC	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	40, 474, 526
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	4 cut(s)	96, 339, 357, 500
Hpy188III	TCNNGA	4 cut(s)	37, 112, 235, 479
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	37, 97, 486
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	32, 288, 396
HpyF3I	CTNAG	2 cut(s)	356, 366
Hsp92II	CATG	3 cut(s)	40, 474, 526
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	106, 370, 475, 495
LmnI	GCTCC	2 cut(s)	581, 589
LpnPI	CCDG	6 cut(s)	142, 248, 458, 495, 522, 576
MaeIII	GTNAC	2 cut(s)	49, 439
MalI	GATC	4 cut(s)	108, 372, 477, 497
MbiI	CCGCTC	1 cut(s)	556
MboI	GATC	4 cut(s)	106, 370, 475, 495
MboII	GAAGA	2 cut(s)	52, 141
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	3 cut(s)	106, 370, 495
MhlI	GDGCHC	2 cut(s)	290, 586
MluCI	AATT	5 cut(s)	26, 63, 223, 329, 549
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	64, 73, 351, 384
MseI	TTAA	3 cut(s)	66, 165, 485
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	155
NdeII	GATC	4 cut(s)	106, 370, 475, 495
NlaIII	CATG	3 cut(s)	40, 474, 526
NlaIV	GGNNCC	5 cut(s)	186, 372, 409, 497, 507
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	474
PagI	TCATGA	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	91
Ple19I	CGATCG	1 cut(s)	478
PpuMI	RGGWCCY	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	508
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	5 cut(s)	186, 372, 409, 497, 507
PspPI	GGNCC	3 cut(s)	20, 185, 505
PspPPI	RGGWCCY	1 cut(s)	505
PsuI	RGATCY	3 cut(s)	106, 370, 495
PvuI	CGATCG	1 cut(s)	478
RsaI	GTAC	2 cut(s)	278, 527
RsaNI	GTAC	2 cut(s)	277, 526
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	66, 165, 485
Sau3AI	GATC	4 cut(s)	106, 370, 475, 495
Sau96I	GGNCC	3 cut(s)	20, 185, 505
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	290, 586
SinI	GGWCC	2 cut(s)	185, 505
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	5 cut(s)	26, 63, 223, 329, 549
SsiI	CCGC	4 cut(s)	83, 153, 188, 556
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	1 cut(s)	478
TasI	AATT	5 cut(s)	26, 63, 223, 329, 549
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	66, 165, 485
Tru9I	TTAA	3 cut(s)	66, 165, 485
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	53, 208
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	185, 505
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.