Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

13930788 .. 13933381

Gene Structure 2594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTGCCAAATGTTTCTTCCGCGCTGTTCTTTAAATACAACACTGCTTTGGGACCGCCTTACCGGGTTTTGGTTGATACCAACTTCAACAATTTCTCTATCCAGAATAAGGTTGGATTTGGAGAAGGGAATGATGGATCGCCTATACGCAAAATGCACTCCTTGTATCACGGATTGTGTAATGGCAGAGCTCGAGAAGTTAGGTCAGAAATATCATGTGGCTCTGAGGATTGCTAAGGATCCCCGTTTTGAGAGACTACTCTGCACTCATAAAGGGACTTACGCTGATGACTGTATTGTTGAAAGAGTTACCCAGCACAAATGCTACATTGTTGCTACATGCGATCGTGATTTAAAGCGAAGAATCAGAAAGGTCCCTGGTGTGCCAATCATGTACATCACTCAACACAAGTATTCAATTGAGAGGTTGCCAGAAGCAACCATAGGTGGAGGTAGGCTTAGATACCAAAAAACTCACATAAGTACTGTTAATTGCCAAATGCTGTTTTATTTCAAGGTTTTTAACCATCTCCAAGATTTTAATGATTGGTACAAAGCAAAGACTGGTACTCAGATTCATATTACATGCTCAGAACAGCAGCAACATCGTCAATGGATTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

208

Amino Acids

24.5

Weight (kDa)

9.29

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	22
AciI	CCGC	2 cut(s)	20, 55
AclWI	GGATC	3 cut(s)	144, 233, 246
AfaI	GTAC	4 cut(s)	395, 484, 551, 568
AfiI	CCNNNNNNNGG	2 cut(s)	69, 108
AgsI	TTSAA	4 cut(s)	87, 302, 417, 514
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	3 cut(s)	144, 233, 246
Ama87I	CYCGRG	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	598
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	52, 373
AsuC2I	CCSGG	1 cut(s)	64
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	52, 373
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	2 cut(s)	127, 534
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	247
BisI	GCNGC	1 cut(s)	599
BlsI	GCNGC	1 cut(s)	600
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	2 cut(s)	64, 378
Bme18I	GGWCC	2 cut(s)	52, 373
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	52, 373
BmiI	GGNNCC	3 cut(s)	53, 240, 375
BmrFI	CCNGG	2 cut(s)	64, 378
Bpu10I	CCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 108
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	69, 108
BseMII	CTCAG	3 cut(s)	215, 584, 603
BseNI	ACTGG	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	610
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	346
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	65, 289, 359
BslI	CCNNNNNNNGG	2 cut(s)	69, 108
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	3 cut(s)	65, 289, 359
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	136, 238, 343
BspACI	CCGC	2 cut(s)	20, 55
BspCNI	CTCAG	3 cut(s)	216, 583, 602
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	53, 240, 375
BspPI	GGATC	3 cut(s)	144, 233, 246
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	3 cut(s)	136, 238, 343
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	293, 487
BstAUI	TGTACA	1 cut(s)	393
BstDEI	CTNAG	5 cut(s)	224, 234, 458, 570, 589
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	3 cut(s)	139, 241, 346
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	3 cut(s)	136, 238, 343
BstMCI	CGRYCG	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	2 cut(s)	342, 588
BstSCI	CCNGG	2 cut(s)	62, 376
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	52, 373
Csp6I	GTAC	4 cut(s)	394, 483, 550, 567
CviAII	CATG	4 cut(s)	215, 339, 391, 585
CviJI	RGCY	3 cut(s)	190, 221, 457
CviKI_1	RGCY	3 cut(s)	190, 221, 457
CviQI	GTAC	4 cut(s)	394, 483, 550, 567
DdeI	CTNAG	5 cut(s)	224, 234, 458, 570, 589
DpnI	GATC	3 cut(s)	138, 240, 345
DpnII	GATC	3 cut(s)	136, 238, 343
DraI	TTTAAA	2 cut(s)	33, 354
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	52, 373
Eco53kI	GAGCTC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	4 cut(s)	218, 342, 394, 588
FaiI	YATR	9 cut(s)	145, 216, 270, 340, 392, 443, 479, 579, 586
FaqI	GGGAC	3 cut(s)	65, 289, 359
FatI	CATG	4 cut(s)	214, 338, 390, 584
Fnu4HI	GCNGC	1 cut(s)	599
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	599
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	599
GsaI	CCCAGC	1 cut(s)	316
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	218, 342, 394, 588
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	363, 574
HpaII	CCGG	1 cut(s)	63
Hpy188I	TCNGA	5 cut(s)	207, 225, 368, 573, 592
Hpy188III	TCNNGA	3 cut(s)	102, 193, 347
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	2 cut(s)	293, 487
HpyCH4V	TGCA	2 cut(s)	156, 264
HpyF3I	CTNAG	5 cut(s)	224, 234, 458, 570, 589
Hsp92II	CATG	4 cut(s)	218, 342, 394, 588
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	136, 238, 343
LpnPI	CCDG	7 cut(s)	76, 115, 326, 363, 390, 444, 549
Lsp1109I	GCAGC	1 cut(s)	610
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	3 cut(s)	138, 240, 345
MboI	GATC	3 cut(s)	136, 238, 343
MboII	GAAGA	2 cut(s)	8, 372
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	3 cut(s)	90, 417, 490
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	3 cut(s)	219, 417, 443
MseI	TTAA	5 cut(s)	32, 353, 489, 522, 540
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	64, 378
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	22
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	3 cut(s)	136, 238, 343
NlaIII	CATG	4 cut(s)	218, 342, 394, 588
NlaIV	GGNNCC	3 cut(s)	53, 240, 375
NspI	RCATGY	2 cut(s)	342, 588
PaeR7I	CTCGAG	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	363, 574
PkrI	GCNGC	1 cut(s)	600
Ple19I	CGATCG	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	53, 240, 375
PspPI	GGNCC	2 cut(s)	52, 373
PspPPI	RGGWCCY	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	346
RsaI	GTAC	4 cut(s)	395, 484, 551, 568
RsaNI	GTAC	4 cut(s)	394, 483, 550, 567
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	32, 353, 489, 522, 540
SatI	GCNGC	1 cut(s)	599
Sau3AI	GATC	3 cut(s)	136, 238, 343
Sau96I	GGNCC	2 cut(s)	52, 373
ScaI	AGTACT	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	64, 378
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	8 cut(s)	113, 192, 205, 375, 428, 448, 454, 519
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	52, 373
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	90, 417, 490
SsiI	CCGC	2 cut(s)	20, 55
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	62, 376
TaaI	ACNGT	2 cut(s)	293, 487
TaqI	TCGA	1 cut(s)	192
TasI	AATT	3 cut(s)	90, 417, 490
TatI	WGTACW	2 cut(s)	393, 482
TfiI	GAWTC	2 cut(s)	363, 574
Tru1I	TTAA	5 cut(s)	32, 353, 489, 522, 540
Tru9I	TTAA	5 cut(s)	32, 353, 489, 522, 540
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	1 cut(s)	598
TspDTI	ATGAA	1 cut(s)	566
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	2 cut(s)	52, 373
XceI	RCATGY	2 cut(s)	342, 588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.