Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

67954014 .. 67954433

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGCCAGGCCGGCCTCACCCTCACCTCGCCGCTCCTCTCTCCTCCTCCTCCTCCTCCGCCGTCCGATCAACCCCACTTGAACGTCACCGTCCACGACGACGACGACAACGGCAACGGCAGTTTTCGCAACCTGTTTGCGTTTCTCACGTCAGGCGGGTTTAAGGTGCCCGTATCGACGACGGCGGATCCGTTCAGGAACCATACTTTGAAAATCGGAGGGGTTTACGAGTGGTTAAAGATCGGGGTTTGCTTCCCCATCGTGATTTTGAGGCTTGTGATCTTTGGGGTTTCGTTGCTGATTGGTACTAGTACTAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0050200 GO:0071617 GO:0071618 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase EF-hand_1 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

108

Amino Acids

11.44

Weight (kDa)

6.81

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	4 cut(s)	32, 59, 156, 185
AclWI	GGATC	2 cut(s)	182, 195
AfaI	GTAC	2 cut(s)	307, 313
AgsI	TTSAA	2 cut(s)	82, 211
AhlI	ACTAGT	1 cut(s)	308
AjiI	CACGTC	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	1 cut(s)	321
AluI	AGCT	1 cut(s)	321
AlwI	GGATC	2 cut(s)	182, 195
AoxI	GGCC	3 cut(s)	4, 9, 13
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	10, 16, 79
BaeGI	GKGCMC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	166
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	4 cut(s)	46, 127, 133, 198
BciT130I	CCWGG	1 cut(s)	8
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	2 cut(s)	309, 315
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmcAI	AGTACT	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	168, 189, 200
BmrFI	CCNGG	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	8
BseRI	GAGGAG	6 cut(s)	26, 33, 36, 39, 42, 45
BseSI	GKGCMC	1 cut(s)	171
BshFI	GGCC	3 cut(s)	6, 11, 15
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	12
BsnI	GGCC	3 cut(s)	6, 11, 15
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	67, 187, 240, 279
BspACI	CCGC	4 cut(s)	32, 59, 156, 185
BspANI	GGCC	3 cut(s)	6, 11, 15
BspLI	GGNNCC	3 cut(s)	168, 189, 200
BspPI	GGATC	2 cut(s)	182, 195
BspT107I	GGYRCC	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssMI	GATC	4 cut(s)	67, 187, 240, 279
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	13
BstKTI	GATC	4 cut(s)	70, 190, 243, 282
BstMBI	GATC	4 cut(s)	67, 187, 240, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 126
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	6, 11, 15
BtrI	CACGTC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	306, 312
CviJI	RGCY	5 cut(s)	6, 11, 15, 274, 321
CviKI_1	RGCY	5 cut(s)	6, 11, 15, 274, 321
CviQI	GTAC	2 cut(s)	306, 312
DpnI	GATC	4 cut(s)	69, 189, 242, 281
DpnII	GATC	4 cut(s)	67, 187, 240, 279
EciI	GGCGGA	2 cut(s)	48, 200
EcoRII	CCWGG	1 cut(s)	6
FaiI	YATR	1 cut(s)	204
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	32
FseI	GGCCGGCC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	2 cut(s)	309, 315
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	6, 11, 15
HapII	CCGG	1 cut(s)	12
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	3 cut(s)	10, 16, 79
Hpy166II	GTNNAC	2 cut(s)	94, 226
Hpy188I	TCNGA	2 cut(s)	67, 218
Hpy188III	TCNNGA	2 cut(s)	196, 262
Hpy8I	GTNNAC	2 cut(s)	94, 226
Hpy99I	CGWCG	5 cut(s)	101, 104, 107, 181, 184
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	2 cut(s)	84, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 126
HpySE526I	ACGT	2 cut(s)	84, 149
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	67, 187, 240, 279
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	20, 25, 138, 146, 181
MaeI	CTAG	2 cut(s)	309, 315
MaeII	ACGT	2 cut(s)	84, 149
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	69, 189, 242, 281
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	4 cut(s)	67, 187, 240, 279
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	171
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	2 cut(s)	162, 236
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	12, 126
NaeI	GCCGGC	1 cut(s)	13
NdeII	GATC	4 cut(s)	67, 187, 240, 279
NgoMIV	GCCGGC	1 cut(s)	11
NlaIV	GGNNCC	3 cut(s)	168, 189, 200
NmuCI	GTSAC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 188
PdiI	GCCGGC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	3 cut(s)	168, 189, 200
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	187
RigI	GGCCGGCC	1 cut(s)	15
RsaI	GTAC	2 cut(s)	307, 313
RsaNI	GTAC	2 cut(s)	306, 312
SaqAI	TTAA	2 cut(s)	162, 236
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	4 cut(s)	67, 187, 240, 279
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	29, 87, 135, 152, 168, 323
SfiI	GGCCNNNNNGGCC	1 cut(s)	12
SpeI	ACTAGT	1 cut(s)	308
SsiI	CCGC	4 cut(s)	32, 59, 156, 185
SspMI	CTAG	2 cut(s)	309, 315
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	2 cut(s)	87, 152
TaqI	TCGA	1 cut(s)	176
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	162, 236
Tru9I	TTAA	2 cut(s)	162, 236
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	180
XspI	CTAG	2 cut(s)	309, 315
ZrmI	AGTACT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.