Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002144.1

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Reverse (-)

139175 .. 144274

Gene Structure 5100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002144.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgggcaaggcaaagaaaggccctaaattcgccgtcatgaagaaggtggtcaccaaaaaagccattaaaaactacaaagaggaggttttgaatccaaacaagaaggatctcagcaaagaaaagctgcccagaaatgtgccaaatgtttcttcggcgctgttctttaaatacaacactgctttgggaccgccttaccgggttctggtggataccaactttatcaatttctctatccagaataagttggatttggagaagggaatgatggactgcctatatgcaaagtgcactccttgtatcacagattgtgtaatggcagagcttgagaagttgggtcagaaatatcgggtggctctgaggattgccaaagatccccgtttcgagagactactgtgtactcataaaggaacctatgctgatgactgtcttgttgatagagtcacccagcataaatgctacattgtcgctacatgtgatagagatttaaagcgaaggatccgaaaggtccctggtgtgccgatcatgtatatcactcaacacaagtactcaattgaacgattgcctgaagcaacaattggtggagctccaagacatggtgctatggtaatcccagatgtattactagagttaagaatttctttatcggactctgctagctttagctttgatcgtaactccagaaggagctatcatttgtattggaacagcttatatgtatcaggttgccacatgcaaagagtaagaagtaaggcagatgtttttattttgtctccagtccctaaagggtcttcattcgatgatgtcctcaatgaattctggaactcagtggatgggactttgaattcgacatgggtcttcactcttgctcgatctattgcgttgtatggaatgggagatgaggtgtttgtcgttcttctcgtcgttatgatcaccgctgatggtgtggacgtggtcgtcaaaagcatcgactggcaaagattacccggctttgtgttgggttttttggcatgtgtatccctcttggtaagcttacccggcttctttgtaatggtcctcctggacctgcacaacacagttggattctcagcatcgtcctcgggcggcaacataaacgaccccagagttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

376

Amino Acids

42.18

Weight (kDa)

9.32

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	953
Acc36I	ACCTGC	1 cut(s)	1071
AccB7I	CCANNNNNTGG	1 cut(s)	593
AciI	CCGC	3 cut(s)	188, 933, 1101
AclWI	GGATC	4 cut(s)	114, 365, 490, 503
AcsI	RAATTY	4 cut(s)	26, 633, 812, 841
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	2 cut(s)	397, 545
AfiI	CCNNNNNNNGG	2 cut(s)	202, 593
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	91, 554, 841
AjiI	CACGTC	1 cut(s)	949
AjnI	CCWGG	2 cut(s)	508, 1056
AjuI	GAANNNNNNNTTGG	4 cut(s)	133, 165, 558, 590
AluBI	AGCT	8 cut(s)	124, 322, 584, 657, 663, 687, 708, 1029
AluI	AGCT	8 cut(s)	124, 322, 584, 657, 663, 687, 708, 1029
Alw21I	GWGCWC	2 cut(s)	290, 586
Alw26I	GTCTC	2 cut(s)	379, 774
Alw44I	GTGCAC	1 cut(s)	286
AlwI	GGATC	4 cut(s)	114, 365, 490, 503
Ama87I	CYCGRG	1 cut(s)	1096
AoxI	GGCC	1 cut(s)	19
ApaLI	GTGCAC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	4 cut(s)	26, 633, 812, 841
ArsI	GACNNNNNNTTYG	2 cut(s)	826, 858
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	5 cut(s)	20, 185, 505, 1051, 1060
AsuC2I	CCSGG	3 cut(s)	197, 984, 1035
AsuHPI	GGTGA	3 cut(s)	43, 433, 922
AsuNHI	GCTAGC	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	1096
AvaII	GGWCC	4 cut(s)	185, 505, 1051, 1060
BaeGI	GKGCMC	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	586
BbsI	GAAGAC	2 cut(s)	780, 847
Bbv12I	GWGCWC	2 cut(s)	290, 586
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	3 cut(s)	259, 824, 932
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	1077, 1111
BciT130I	CCWGG	2 cut(s)	510, 1058
BciVI	GTATCC	2 cut(s)	202, 1024
BclI	TGATCA	1 cut(s)	927
BcnI	CCSGG	3 cut(s)	197, 984, 1035
BcoDI	GTCTC	2 cut(s)	379, 774
BfaI	CTAG	2 cut(s)	623, 654
BfoI	RGCGCY	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	1071
BfuI	GTATCC	2 cut(s)	202, 1024
BisI	GCNGC	2 cut(s)	125, 1102
BlsI	GCNGC	2 cut(s)	126, 1103
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	5 cut(s)	197, 510, 984, 1035, 1058
Bme18I	GGWCC	4 cut(s)	185, 505, 1051, 1060
BmeT110I	CYCGRG	1 cut(s)	1096
BmgBI	CACGTC	1 cut(s)	949
BmgT120I	GGNCC	5 cut(s)	20, 185, 505, 1051, 1060
BmiI	GGNNCC	4 cut(s)	186, 409, 497, 507
BmrFI	CCNGG	5 cut(s)	197, 510, 984, 1035, 1058
BmsI	GCATC	2 cut(s)	972, 1097
BmtI	GCTAGC	1 cut(s)	657
BoxI	GACNNNNGTC	1 cut(s)	851
BpiI	GAAGAC	2 cut(s)	780, 847
BpmI	CTGGAG	2 cut(s)	661, 756
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	3 cut(s)	197, 984, 1035
BsaJI	CCNNGG	2 cut(s)	508, 1095
BsaXI	ACNNNNNCTCC	2 cut(s)	885, 915
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 593
Bse1I	ACTGG	2 cut(s)	773, 974
BseBI	CCWGG	2 cut(s)	510, 1058
BseDI	CCNNGG	2 cut(s)	508, 1095
BseGI	GGATG	1 cut(s)	835
BseLI	CCNNNNNNNGG	2 cut(s)	202, 593
BseMII	CTCAG	4 cut(s)	124, 347, 837, 1098
BseNI	ACTGG	2 cut(s)	773, 974
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	1049
BshFI	GGCC	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	290, 586
BsiHKCI	CYCGRG	1 cut(s)	1096
BsiSI	CCGG	3 cut(s)	196, 984, 1035
BslFI	GGGAC	4 cut(s)	198, 491, 761, 847
BslI	CCNNNNNNNGG	2 cut(s)	202, 593
BsmAI	GTCTC	2 cut(s)	379, 774
BsmFI	GGGAC	4 cut(s)	198, 491, 761, 847
BsnI	GGCC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	1096
Bsp1286I	GDGCHC	2 cut(s)	290, 586
Bsp143I	GATC	7 cut(s)	106, 370, 495, 519, 667, 869, 927
BspACI	CCGC	3 cut(s)	188, 933, 1101
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	4 cut(s)	123, 348, 836, 1097
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	186, 409, 497, 507
BspMI	ACCTGC	1 cut(s)	1071
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	4 cut(s)	114, 365, 490, 503
BsrI	ACTGG	2 cut(s)	773, 974
BssECI	CCNNGG	2 cut(s)	508, 1095
BssMI	GATC	7 cut(s)	106, 370, 495, 519, 667, 869, 927
Bst2UI	CCWGG	2 cut(s)	510, 1058
Bst4CI	ACNGT	3 cut(s)	393, 425, 1075
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	4 cut(s)	110, 356, 823, 1084
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	835
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	7 cut(s)	109, 373, 498, 522, 670, 872, 930
BstMAI	GTCTC	2 cut(s)	379, 774
BstMBI	GATC	7 cut(s)	106, 370, 495, 519, 667, 869, 927
BstMWI	GCNNNNNNNGC	1 cut(s)	1035
BstNI	CCWGG	2 cut(s)	510, 1058
BstNSI	RCATGY	3 cut(s)	474, 733, 1011
BstPAI	GACNNNNGTC	1 cut(s)	851
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	5 cut(s)	195, 508, 982, 1033, 1056
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	2 cut(s)	780, 847
BstX2I	RGATCY	3 cut(s)	106, 370, 495
BstYI	RGATCY	3 cut(s)	106, 370, 495
BsuI	GTATCC	2 cut(s)	202, 1024
BsuRI	GGCC	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	949
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 831
BveI	ACCTGC	1 cut(s)	1071
Cac8I	GCNNGC	1 cut(s)	655
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	5 cut(s)	20, 185, 505, 1051, 1060
Csp6I	GTAC	2 cut(s)	396, 544
CviAII	CATG	7 cut(s)	37, 471, 523, 593, 730, 849, 1008
CviQI	GTAC	2 cut(s)	396, 544
DdeI	CTNAG	4 cut(s)	110, 356, 823, 1084
DpnI	GATC	7 cut(s)	108, 372, 497, 521, 669, 871, 929
DpnII	GATC	7 cut(s)	106, 370, 495, 519, 667, 869, 927
DraI	TTTAAA	2 cut(s)	166, 486
DrdI	GACNNNNNNGTC	1 cut(s)	953
DseDI	GACNNNNNNGTC	1 cut(s)	953
Ecl136II	GAGCTC	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	586
Eco47I	GGWCC	4 cut(s)	185, 505, 1051, 1060
Eco53kI	GAGCTC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	1096
Eco91I	GGTNACC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	584
EcoO109I	RGGNCCY	2 cut(s)	20, 505
EcoO65I	GGTNACC	1 cut(s)	49
EcoRI	GAATTC	2 cut(s)	812, 841
EcoRII	CCWGG	2 cut(s)	508, 1056
EcoT38I	GRGCYC	1 cut(s)	586
FaeI	CATG	7 cut(s)	40, 474, 526, 596, 733, 852, 1011
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FaqI	GGGAC	4 cut(s)	198, 491, 761, 847
FatI	CATG	7 cut(s)	36, 470, 522, 592, 729, 848, 1007
FbaI	TGATCA	1 cut(s)	927
Fnu4HI	GCNGC	2 cut(s)	125, 1102
FokI	GGATG	1 cut(s)	842
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	2 cut(s)	125, 1102
FspBI	CTAG	2 cut(s)	623, 654
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	2 cut(s)	125, 1102
GsaI	CCCAGC	1 cut(s)	448
GsuI	CTGGAG	2 cut(s)	661, 756
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	3 cut(s)	196, 984, 1035
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	7 cut(s)	40, 474, 526, 596, 733, 852, 1011
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	1027
HinfI	GANTC	4 cut(s)	91, 438, 647, 1080
HpaII	CCGG	3 cut(s)	196, 984, 1035
HphI	GGTGA	3 cut(s)	43, 433, 922
Hpy166II	GTNNAC	3 cut(s)	288, 396, 946
Hpy188I	TCNGA	4 cut(s)	339, 357, 500, 646
Hpy188III	TCNNGA	5 cut(s)	37, 235, 382, 678, 817
Hpy8I	GTNNAC	3 cut(s)	288, 396, 946
Hpy99I	CGWCG	1 cut(s)	923
HpyAV	CCTTC	5 cut(s)	37, 97, 250, 486, 675
HpyCH4III	ACNGT	3 cut(s)	393, 425, 1075
HpyCH4IV	ACGT	1 cut(s)	948
HpyCH4V	TGCA	4 cut(s)	281, 288, 733, 1066
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1035
HpyF3I	CTNAG	4 cut(s)	110, 356, 823, 1084
HpySE526I	ACGT	1 cut(s)	948
Hsp92II	CATG	7 cut(s)	40, 474, 526, 596, 733, 852, 1011
HspAI	GCGC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	927
Kzo9I	GATC	7 cut(s)	106, 370, 495, 519, 667, 869, 927
LmnI	GCTCC	3 cut(s)	581, 589, 684
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	972, 1097
MaeI	CTAG	2 cut(s)	623, 654
MaeII	ACGT	1 cut(s)	948
MaeIII	GTNAC	3 cut(s)	49, 439, 671
MalI	GATC	7 cut(s)	108, 372, 497, 521, 669, 871, 929
MboI	GATC	7 cut(s)	106, 370, 495, 519, 667, 869, 927
MboII	GAAGA	5 cut(s)	52, 141, 780, 847, 905
MfeI	CAATTG	2 cut(s)	549, 573
MflI	RGATCY	3 cut(s)	106, 370, 495
MhlI	GDGCHC	2 cut(s)	290, 586
MluCI	AATT	7 cut(s)	26, 223, 549, 573, 633, 812, 841
MlyI	GAGTC	2 cut(s)	447, 641
MmeI	TCCRAC	2 cut(s)	225, 1057
MnlI	CCTC	8 cut(s)	73, 76, 351, 815, 892, 1028, 1064, 1105
MseI	TTAA	4 cut(s)	66, 165, 485, 629
MspA1I	CMGCKG	1 cut(s)	935
MspI	CCGG	3 cut(s)	196, 984, 1035
MspR9I	CCNGG	5 cut(s)	197, 510, 984, 1035, 1058
MunI	CAATTG	2 cut(s)	549, 573
MvaI	CCWGG	2 cut(s)	510, 1058
MwoI	GCNNNNNNNGC	1 cut(s)	1035
NciI	CCSGG	3 cut(s)	197, 984, 1035
NdeII	GATC	7 cut(s)	106, 370, 495, 519, 667, 869, 927
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	7 cut(s)	40, 474, 526, 596, 733, 852, 1011
NlaIV	GGNNCC	4 cut(s)	186, 409, 497, 507
NmuCI	GTSAC	2 cut(s)	49, 439
NspI	RCATGY	3 cut(s)	474, 733, 1011
PagI	TCATGA	1 cut(s)	36
PciI	ACATGT	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PfeI	GAWTC	2 cut(s)	91, 1080
PflFI	GACNNNGTC	1 cut(s)	950
PflMI	CCANNNNNTGG	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	1056
PkrI	GCNGC	2 cut(s)	126, 1103
PleI	GAGTC	2 cut(s)	446, 641
PpsI	GAGTC	2 cut(s)	446, 641
PpuMI	RGGWCCY	1 cut(s)	505
PscI	ACATGT	1 cut(s)	470
PshAI	GACNNNNGTC	1 cut(s)	851
Psp124BI	GAGCTC	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	508, 1056
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	2 cut(s)	508, 1056
PspN4I	GGNNCC	4 cut(s)	186, 409, 497, 507
PspPI	GGNCC	5 cut(s)	20, 185, 505, 1051, 1060
PspPPI	RGGWCCY	1 cut(s)	505
PsuI	RGATCY	3 cut(s)	106, 370, 495
PsyI	GACNNNGTC	1 cut(s)	950
RsaI	GTAC	2 cut(s)	397, 545
RsaNI	GTAC	2 cut(s)	396, 544
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	4 cut(s)	66, 165, 485, 629
SatI	GCNGC	2 cut(s)	125, 1102
Sau3AI	GATC	7 cut(s)	106, 370, 495, 519, 667, 869, 927
Sau96I	GGNCC	5 cut(s)	20, 185, 505, 1051, 1060
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	2 cut(s)	447, 641
ScrFI	CCNGG	5 cut(s)	197, 510, 984, 1035, 1058
SduI	GDGCHC	2 cut(s)	290, 586
SfaNI	GCATC	2 cut(s)	972, 1097
SinI	GGWCC	4 cut(s)	185, 505, 1051, 1060
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	7 cut(s)	26, 223, 549, 573, 633, 812, 841
SsiI	CCGC	3 cut(s)	188, 933, 1101
SspMI	CTAG	2 cut(s)	623, 654
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	5 cut(s)	195, 508, 982, 1033, 1056
TaaI	ACNGT	3 cut(s)	393, 425, 1075
TaiI	ACGT	1 cut(s)	951
TaqI	TCGA	5 cut(s)	381, 795, 845, 868, 966
TasI	AATT	7 cut(s)	26, 223, 549, 573, 633, 812, 841
TatI	WGTACW	2 cut(s)	395, 543
TauI	GCSGC	1 cut(s)	1104
TfiI	GAWTC	2 cut(s)	91, 1080
Tru1I	TTAA	4 cut(s)	66, 165, 485, 629
Tru9I	TTAA	4 cut(s)	66, 165, 485, 629
TscAI	CASTG	2 cut(s)	181, 831
TseFI	GTSAC	2 cut(s)	49, 439
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	2 cut(s)	49, 439
TspDTI	ATGAA	3 cut(s)	53, 780, 825
TspRI	CASTG	2 cut(s)	181, 831
Tth111I	GACNNNGTC	1 cut(s)	950
Van91I	CCANNNNNTGG	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	286
VpaK11BI	GGWCC	4 cut(s)	185, 505, 1051, 1060
XapI	RAATTY	4 cut(s)	26, 633, 812, 841
XceI	RCATGY	3 cut(s)	474, 733, 1011
XspI	CTAG	2 cut(s)	623, 654
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.