Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Forward (+)

48821040 .. 48824372

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG386300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTTTCTATGGGGTTGTTCTCTAAACACTGCTTTGGGACCACCTTACCAGGTTTCGGAAGATACCAACTTTATCAATTTCTCTATCCAGAATAAGTTGGATCTGCAGAAGGGAATGATGAACTGCCCATATGCAAAGTGCACTCCTGCTATCACAGATTATGTAAGGGCAGAGCTTGAGAAGTTGGGTCAGAAATCTTTGAGAACCAAAGAGACACCTCTAGCTTCACTCTACTGTATTTTACATTTGTTCTTTCTAAATTATTATAGAAGGGTAGAACCAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

96

Amino Acids

11.16

Weight (kDa)

8.37

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	175, 224
AluI	AGCT	2 cut(s)	175, 224
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	108
ApaLI	GTGCAC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	108
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	236
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	48
CviJI	RGCY	2 cut(s)	175, 224
CviKI_1	RGCY	2 cut(s)	175, 224
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	48
FaiI	YATR	5 cut(s)	10, 130, 132, 162, 267
FaqI	GGGAC	1 cut(s)	51
FauNDI	CATATG	1 cut(s)	130
FspBI	CTAG	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	58, 192
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	103, 264
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	3 cut(s)	106, 134, 141
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	35, 62, 101, 159
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	1 cut(s)	221
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	2 cut(s)	76, 259
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	100
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	5 cut(s)	46, 54, 177, 220, 226
SexAI	ACCWGGT	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	104
SgeI	CNNG	6 cut(s)	61, 62, 100, 158, 188, 233
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	76, 259
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	236
TasI	AATT	2 cut(s)	76, 259
TscAI	CASTG	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	38
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.