Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Forward (+)

6558774 .. 6563403

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGCAAGGCAAAGAAAGGCCCTAAATTCGCTGTCATGAAGAAGGTGGTCACCAAAAAAGCCATTAAAAACTACAAAGAGGAGGTTTTGAACCCAAACAAGAAGGATCTCAGCAAAGAAAAGCTACCCCGAAATGTGCCAAATGTTTCTTCGGCGCTGTTCTTTAAATACAACACTGCGTTGGGGCCGCCTTACCGGGTTTTGGTGGATACTAACTTTATCAATTTCTCTATCCAGAATAAGTTGGATTTGGAGAAGGGAATGATGGACTGCCTATATGCAAAGTGCACTCCTTGTATCACAGATTGTGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGAGGATTGCCAAAGATCCCCGTTTTGAGAGACTACTGTGTACTCATAAAGGAACATATGCTGATGACTGTCTTGTTGATAGAGTCACCCAGCATAAATGCTACATTGTCGCTACCTGTGATAGAGATTTAAAGCGAAGGATCCGAAAGGTCCCTGGTGTGCCGATTATGTATATCACTCAACACAAGTACTCAATTGAACGGTTGCCTGAAGCAACAATCGGTGGAGCTCCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

198

Amino Acids

22.69

Weight (kDa)

9.66

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_9	PF18477	67 - 179	1.2e-06	PIN like domain
Fcf1	PF04900	90 - 186	1.8e-36	Fcf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	4 cut(s)	114, 365, 490, 503
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	2 cut(s)	397, 545
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	91, 554
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	3 cut(s)	124, 322, 584
AluI	AGCT	3 cut(s)	124, 322, 584
Alw21I	GWGCWC	2 cut(s)	290, 586
Alw26I	GTCTC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	286
AlwI	GGATC	4 cut(s)	114, 365, 490, 503
AoxI	GGCC	2 cut(s)	19, 185
ApaLI	GTGCAC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	20, 185, 505
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	43, 433
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	2 cut(s)	290, 586
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	2 cut(s)	197, 510
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	20, 185, 505
BmiI	GGNNCC	3 cut(s)	186, 497, 507
BmrFI	CCNGG	2 cut(s)	197, 510
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	124, 347
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	444
BshFI	GGCC	2 cut(s)	21, 187
BsiHKAI	GWGCWC	2 cut(s)	290, 586
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	21, 187
Bsp1286I	GDGCHC	2 cut(s)	290, 586
Bsp143I	GATC	3 cut(s)	106, 370, 495
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	21, 187
BspCNI	CTCAG	2 cut(s)	123, 348
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	186, 497, 507
BspPI	GGATC	4 cut(s)	114, 365, 490, 503
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	3 cut(s)	106, 370, 495
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	393, 425, 558
BstDEI	CTNAG	2 cut(s)	110, 356
BstEII	GGTNACC	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	3 cut(s)	109, 373, 498
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	3 cut(s)	106, 370, 495
BstNI	CCWGG	1 cut(s)	510
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	195, 508
BstSLI	GKGCMC	1 cut(s)	290
BstX2I	RGATCY	3 cut(s)	106, 370, 495
BstYI	RGATCY	3 cut(s)	106, 370, 495
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	21, 187
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	20, 185, 505
Csp6I	GTAC	2 cut(s)	396, 544
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	7 cut(s)	21, 62, 124, 187, 322, 353, 584
CviKI_1	RGCY	7 cut(s)	21, 62, 124, 187, 322, 353, 584
CviQI	GTAC	2 cut(s)	396, 544
DdeI	CTNAG	2 cut(s)	110, 356
DpnI	GATC	3 cut(s)	108, 372, 497
DpnII	GATC	3 cut(s)	106, 370, 495
DraI	TTTAAA	2 cut(s)	166, 486
Ecl136II	GAGCTC	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	585
Eco91I	GGTNACC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	584
EcoO109I	RGGNCCY	2 cut(s)	20, 505
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	586
FaeI	CATG	1 cut(s)	40
FaiI	YATR	9 cut(s)	38, 277, 279, 402, 412, 414, 450, 524, 528
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	188
GsaI	CCCAGC	1 cut(s)	448
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	21, 187
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	43, 433
Hpy166II	GTNNAC	2 cut(s)	288, 396
Hpy188I	TCNGA	3 cut(s)	339, 357, 500
Hpy188III	TCNNGA	2 cut(s)	37, 235
Hpy8I	GTNNAC	2 cut(s)	288, 396
HpyAV	CCTTC	4 cut(s)	37, 97, 250, 486
HpyCH4III	ACNGT	3 cut(s)	393, 425, 558
HpyCH4V	TGCA	2 cut(s)	281, 288
HpyF3I	CTNAG	2 cut(s)	110, 356
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	106, 370, 495
LmnI	GCTCC	2 cut(s)	581, 589
LpnPI	CCDG	7 cut(s)	209, 248, 458, 484, 495, 522, 576
MaeIII	GTNAC	2 cut(s)	49, 439
MalI	GATC	3 cut(s)	108, 372, 497
MboI	GATC	3 cut(s)	106, 370, 495
MboII	GAAGA	2 cut(s)	52, 141
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	3 cut(s)	106, 370, 495
MhlI	GDGCHC	2 cut(s)	290, 586
MluCI	AATT	3 cut(s)	26, 223, 549
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	73, 76, 351
MseI	TTAA	3 cut(s)	66, 165, 485
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	197, 510
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	510
NciI	CCSGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	3 cut(s)	106, 370, 495
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	3 cut(s)	186, 497, 507
NmuCI	GTSAC	2 cut(s)	49, 439
PagI	TCATGA	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PpuMI	RGGWCCY	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	508
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	186, 497, 507
PspPI	GGNCC	3 cut(s)	20, 185, 505
PspPPI	RGGWCCY	1 cut(s)	505
PsuI	RGATCY	3 cut(s)	106, 370, 495
RsaI	GTAC	2 cut(s)	397, 545
RsaNI	GTAC	2 cut(s)	396, 544
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	66, 165, 485
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	3 cut(s)	106, 370, 495
Sau96I	GGNCC	3 cut(s)	20, 185, 505
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	197, 510
SduI	GDGCHC	2 cut(s)	290, 586
SetI	ASST	7 cut(s)	48, 87, 126, 324, 473, 507, 586
SinI	GGWCC	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	26, 223, 549
SsiI	CCGC	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	195, 508
TaaI	ACNGT	3 cut(s)	393, 425, 558
TasI	AATT	3 cut(s)	26, 223, 549
TatI	WGTACW	2 cut(s)	395, 543
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	3 cut(s)	66, 165, 485
Tru9I	TTAA	3 cut(s)	66, 165, 485
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	49, 439
Tsp45I	GTSAC	2 cut(s)	49, 439
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.