Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002196

Physical Location & Seq

Genomic Coordinates Forward (+)

76143984 .. 76144631

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAACCAGAACTCGAAGCCGCCATTGACATACTTCCAAGCTCTCGTCGAGGTCCAAACGGCGTTATTGTCAAGCCAAGGAAGGATACTCGAGAAGAACGACCAGACTCTGGTCACCGTCGCCGATTTCAGCGAACAGGCGCTGATCAGTTTAGAGCTGGGGAGACAATTCCCTTCGATTCCTTTGGTGGTGGCGGAGGAGAACTCGGTGTCGGTGCAGTTGATAAGGCCGCGCAACCAACTACTTTCCGGAACAGATGCGAATGGCTTCGGACTGCCTTCTCTCAAACCAAAATTTCTTCGATCAGGTGAGAATCTAGGGGTGTACATCTTGACAAGCAAGATTGTCGTCAATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

120

Amino Acids

12.97

Weight (kDa)

6.21

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26530 AT2G46230 AT2G46230
fragaria_vesca	FvH4_7g15670
malus_domestica	MD01G1073500.v1.1
prunus_persica	Prupe.2G181300_v2.0.a1
pyrus_communis	pycom01g10270 pycom07g12640
rosa_chinensis	RchiOBHm_Chr1g0326781 RchiOBHm_Chr1g0358391 RchiOBHm_Chr3g0464711 RchiOBHm_Chr4g0446551 RchiOBHm_Chr5g0018241 RchiOBHm_Chr5g0036481 RchiOBHm_Chr5g0047481 RchiOBHm_Chr7g0222481 RchiOBHm_Chr7g0242171
rosa_laevigata	RLG00000002127 RLG00000005477 RLG00000009675 RLG00000021519 RLG00000021818 RLG00000027964 RLG00000029323 RLG00000030557
rosa_multiflora	Rmu_sc0000429.1_g000008 Rmu_sc0001428.1_g000020 Rmu_sc0002144.1_g000032
rosa_roxburghii	Rroxscaffold_3G00222870 Rroxscaffold_4G00285130 Rroxscaffold_4G00298010 Rroxscaffold_4G00309490
rosa_rugosa	Rorug01G0261400 Rorug05G0537800
rosa_samantha	Rh1AG242900 Rh1CG258900 Rh3BG136100 Rh3CG138700 Rh4CG046400 Rh4DG046100 Rh5BG567000 Rh7CG386300
rosa_wichuraiana	Rw1G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccII	CGCG	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	3 cut(s)	20, 194, 230
AcsI	RAATTY	1 cut(s)	293
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	41, 157
AluI	AGCT	2 cut(s)	41, 157
Alw26I	GTCTC	1 cut(s)	157
AlwNI	CAGNNNCTG	2 cut(s)	109, 142
Ama87I	CYCGRG	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	142, 234
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	106, 320
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	20, 230
BlsI	GCNGC	2 cut(s)	21, 231
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	52
BmsI	GCATC	1 cut(s)	247
BoxI	GACNNNNGTC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	144, 302
BspACI	CCGC	3 cut(s)	20, 194, 230
BspANI	GGCC	1 cut(s)	229
BspEI	TCCGGA	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	232
BsrGI	TGTACA	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	144, 302
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	324
BstEII	GGTNACC	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 234
BstKTI	GATC	2 cut(s)	147, 305
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	144, 302
BstPAI	GACNNNNGTC	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	229
CaiI	CAGNNNCTG	2 cut(s)	109, 142
CfoI	GCGC	2 cut(s)	142, 234
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	325
CviJI	RGCY	6 cut(s)	19, 41, 75, 157, 229, 267
CviKI_1	RGCY	6 cut(s)	19, 41, 75, 157, 229, 267
CviQI	GTAC	1 cut(s)	325
DpnI	GATC	2 cut(s)	146, 304
DpnII	GATC	2 cut(s)	144, 302
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaiI	YATR	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	20, 230
Fsp4HI	GCNGC	2 cut(s)	20, 230
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	2 cut(s)	141, 233
GluI	GCNGC	2 cut(s)	20, 230
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	2 cut(s)	142, 234
Hin6I	GCGC	2 cut(s)	140, 232
HinP1I	GCGC	2 cut(s)	140, 232
HinfI	GANTC	3 cut(s)	106, 178, 313
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	106, 320
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	3 cut(s)	91, 249, 331
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	2 cut(s)	50, 122
HpyAV	CCTTC	3 cut(s)	75, 183, 288
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	217
HspAI	GCGC	2 cut(s)	140, 232
Kpn2I	TCCGGA	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	144, 302
LpnPI	CCDG	7 cut(s)	20, 95, 116, 122, 143, 262, 291
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	146, 304
MboI	GATC	2 cut(s)	144, 302
MboII	GAAGA	2 cut(s)	106, 290
MluCI	AATT	2 cut(s)	167, 293
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	43, 190
MroI	TCCGGA	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	266
MspI	CCGG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	232
NdeII	GATC	2 cut(s)	144, 302
NmuCI	GTSAC	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	178, 313
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	21, 231
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PshAI	GACNNNNGTC	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	2 cut(s)	109, 142
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	2 cut(s)	20, 230
Sau3AI	GATC	2 cut(s)	144, 302
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	100
SetI	ASST	4 cut(s)	43, 54, 159, 310
SfaNI	GCATC	1 cut(s)	247
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	167, 293
SsiI	CCGC	3 cut(s)	20, 194, 230
SspMI	CTAG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	5 cut(s)	14, 48, 90, 176, 301
TasI	AATT	2 cut(s)	167, 293
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	2 cut(s)	22, 232
TfiI	GAWTC	2 cut(s)	178, 313
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.