Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Reverse (-)

13294431 .. 13295079

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGCTACTACAACCAGCAGCAGCCCCCCGTTGGCGTTCCTCCACCTCAAGGTTATCCACCGGAAGGATATCCCAAAGACGCTTATCCGCCGCCGGGGTATCCACAGCAGGGATACCCTCCACCTCAGGGGTACCCCCAAGGGTACCCTCCTCCCTATGCCCCTCAGTACGCCCAGCCTCCCCCTCAACAACAGAACAACACCAGTGGCCTCATGGAGGGCTGGTATGTAATTTCCTTCCCTTTCTTGTCCTCCTTTTTACTTTCTGTATTTCGCTTTGTAAAATTAGTGAATCTGAGTTTTGAGTCTTGGGTCTTGACTCAGATCTGGTTTGGTCTTGTTGAGTCTAACACCGAGTCAACTCGGTCCCTGGTTTGTTGTCCTTTAGTCAAACATATCTTACAACTCTTTTCTGAAAGAGGAAATTGGAGCGATGGTCCTGAAATTATGGCTCAAATTGTAGCACTAGTCCCTGAATTAGGAATTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM XYPPX

Protein Analysis

164

Amino Acids

18.33

Weight (kDa)

4.95

Isoelectric Point (pI)

71.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	132, 144
AccB1I	GGYRCC	2 cut(s)	132, 144
AciI	CCGC	2 cut(s)	89, 92
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	3 cut(s)	134, 146, 170
AfiI	CCNNNNNNNGG	8 cut(s)	32, 50, 65, 95, 110, 128, 217, 479
AhlI	ACTAGT	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	19, 22
ApoI	RAATTY	1 cut(s)	483
Asp718I	GGTACC	2 cut(s)	132, 144
AspS9I	GGNCC	2 cut(s)	366, 437
AsuC2I	CCSGG	1 cut(s)	96
AvaII	GGWCC	2 cut(s)	366, 437
AxyI	CCTNAGG	1 cut(s)	126
BanI	GGYRCC	2 cut(s)	132, 144
BbvI	GCAGC	2 cut(s)	31, 34
BccI	CCATC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	371
BciVI	GTATCC	2 cut(s)	107, 111
BcnI	CCSGG	1 cut(s)	96
BcuI	ACTAGT	1 cut(s)	466
BfaI	CTAG	1 cut(s)	467
BfuI	GTATCC	2 cut(s)	107, 111
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	3 cut(s)	20, 23, 92
BlsI	GCNGC	3 cut(s)	21, 24, 93
Bme1390I	CCNGG	2 cut(s)	96, 371
Bme18I	GGWCC	2 cut(s)	366, 437
BmgT120I	GGNCC	2 cut(s)	366, 437
BmiI	GGNNCC	3 cut(s)	134, 146, 368
BmrFI	CCNGG	2 cut(s)	96, 371
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	95, 139, 369
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 421, 451
Bsc4I	CCNNNNNNNGG	8 cut(s)	32, 50, 65, 95, 110, 128, 217, 479
Bse1I	ACTGG	1 cut(s)	204
Bse21I	CCTNAGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	95, 139, 369
BseLI	CCNNNNNNNGG	8 cut(s)	32, 50, 65, 95, 110, 128, 217, 479
BseMII	CTCAG	4 cut(s)	140, 179, 287, 335
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	31, 34
BseYI	CCCAGC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	2 cut(s)	132, 144
BsiSI	CCGG	2 cut(s)	62, 95
BslFI	GGGAC	2 cut(s)	352, 455
BslI	CCNNNNNNNGG	8 cut(s)	32, 50, 65, 95, 110, 128, 217, 479
BsmFI	GGGAC	2 cut(s)	352, 455
BsnI	GGCC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	2 cut(s)	89, 92
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	4 cut(s)	139, 178, 288, 334
BspLI	GGNNCC	3 cut(s)	134, 146, 368
BspT107I	GGYRCC	2 cut(s)	132, 144
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	3 cut(s)	95, 139, 369
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	371
BstDEI	CTNAG	4 cut(s)	126, 165, 296, 321
BstENI	CCTNNNNNAGG	2 cut(s)	215, 477
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	94, 369
BstV1I	GCAGC	2 cut(s)	31, 34
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	2 cut(s)	107, 111
BsuRI	GGCC	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	366, 437
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	133, 145, 169
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	6, 25, 178, 210, 222, 452
CviKI_1	RGCY	6 cut(s)	6, 25, 178, 210, 222, 452
CviQI	GTAC	3 cut(s)	133, 145, 169
DdeI	CTNAG	4 cut(s)	126, 165, 296, 321
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	366, 437
Eco81I	CCTNAGG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	2 cut(s)	215, 477
EcoRI	GAATTC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	159, 215, 228, 396, 449
FaqI	GGGAC	2 cut(s)	352, 455
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	20, 23, 92
Fsp4HI	GCNGC	3 cut(s)	20, 23, 92
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	3 cut(s)	20, 23, 92
GsaI	CCCAGC	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	62, 95
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	5 cut(s)	292, 305, 319, 344, 356
HpaII	CCGG	2 cut(s)	62, 95
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	3 cut(s)	297, 324, 415
Hpy188III	TCNNGA	2 cut(s)	316, 440
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	59, 247
HpyF3I	CTNAG	4 cut(s)	126, 165, 296, 321
Hsp92II	CATG	1 cut(s)	217
KpnI	GGTACC	2 cut(s)	136, 148
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	429
Lsp1109I	GCAGC	2 cut(s)	31, 34
MaeI	CTAG	1 cut(s)	467
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MflI	RGATCY	1 cut(s)	324
MluCI	AATT	7 cut(s)	231, 284, 424, 444, 456, 476, 483
MlyI	GAGTC	4 cut(s)	313, 314, 353, 365
MspI	CCGG	2 cut(s)	62, 95
MspR9I	CCNGG	2 cut(s)	96, 371
MvaI	CCWGG	1 cut(s)	371
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	3 cut(s)	134, 146, 368
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	21, 24, 93
PleI	GAGTC	4 cut(s)	313, 313, 352, 364
PpsI	GAGTC	4 cut(s)	313, 313, 352, 364
Psp6I	CCWGG	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	134, 146, 368
PspPI	GGNCC	2 cut(s)	366, 437
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	3 cut(s)	134, 146, 170
RsaNI	GTAC	3 cut(s)	133, 145, 169
SatI	GCNGC	3 cut(s)	20, 23, 92
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	2 cut(s)	366, 437
SchI	GAGTC	4 cut(s)	313, 314, 353, 365
ScrFI	CCNGG	2 cut(s)	96, 371
SetI	ASST	4 cut(s)	8, 49, 55, 127
SinI	GGWCC	2 cut(s)	366, 437
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SpeI	ACTAGT	1 cut(s)	466
Sse9I	AATT	7 cut(s)	231, 284, 424, 444, 456, 476, 483
SsiI	CCGC	2 cut(s)	89, 92
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	94, 369
StyI	CCWWGG	1 cut(s)	139
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	7 cut(s)	231, 284, 424, 444, 456, 476, 483
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	292
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	19, 22
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	366, 437
XagI	CCTNNNNNAGG	2 cut(s)	215, 477
XapI	RAATTY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.