Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Reverse (-)

17601305 .. 17603205

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1107500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGCTACTACAACCAGCAGCAGCCCCCTGTTGGTGTTCCTCCACCTCAGGGTTATCCACCGGAAGGATATCCTAAAGACGCTTATCCACCGCCGGTATATCCACCGCAGGGATACCCTCCACCTCAGGGGTACCCCCAAGGGTACCCTCCTCCCTACGCCCCTCAGTATGCCCAGCCTCCCCCCCAACAACAACAAAGCAGCAGCAGTGGCTGTATGGAGGGCTGTTTGGCTGCTCTGTGCTGTTGCTGTCTGCTCGATGCCTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM XYPPX

Protein Analysis

91

Amino Acids

9.74

Weight (kDa)

4.05

Isoelectric Point (pI)

113.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYSTM	PF12734	49 - 90	2.1e-07	Cysteine-rich TM module stress tolerance

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	132, 144
AccB1I	GGYRCC	2 cut(s)	132, 144
AciI	CCGC	2 cut(s)	92, 107
AfaI	GTAC	2 cut(s)	134, 146
AfiI	CCNNNNNNNGG	5 cut(s)	32, 50, 65, 110, 128
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
AlwNI	CAGNNNCTG	1 cut(s)	213
ApeKI	GCWGC	5 cut(s)	19, 22, 201, 204, 233
Asp718I	GGTACC	2 cut(s)	132, 144
AxyI	CCTNAGG	2 cut(s)	48, 126
BanI	GGYRCC	2 cut(s)	132, 144
BbvI	GCAGC	5 cut(s)	31, 34, 213, 216, 220
BciVI	GTATCC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	5 cut(s)	20, 23, 202, 205, 234
BlsI	GCNGC	5 cut(s)	21, 24, 203, 206, 235
BmiI	GGNNCC	2 cut(s)	134, 146
BmsI	GCATC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 50, 65, 110, 128
Bse118I	RCCGGY	1 cut(s)	94
Bse21I	CCTNAGG	2 cut(s)	48, 126
BseDI	CCNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	5 cut(s)	32, 50, 65, 110, 128
BseMII	CTCAG	3 cut(s)	62, 140, 179
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	5 cut(s)	31, 34, 213, 216, 220
BseYI	CCCAGC	1 cut(s)	174
BshNI	GGYRCC	2 cut(s)	132, 144
BsiSI	CCGG	2 cut(s)	62, 95
BslI	CCNNNNNNNGG	5 cut(s)	32, 50, 65, 110, 128
BspACI	CCGC	2 cut(s)	92, 107
BspCNI	CTCAG	3 cut(s)	61, 139, 178
BspLI	GGNNCC	2 cut(s)	134, 146
BspT107I	GGYRCC	2 cut(s)	132, 144
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	48, 126, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstV1I	GCAGC	5 cut(s)	31, 34, 213, 216, 220
Bsu36I	CCTNAGG	2 cut(s)	48, 126
BsuI	GTATCC	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	94
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	133, 145
CviJI	RGCY	6 cut(s)	6, 25, 178, 213, 225, 233
CviKI_1	RGCY	6 cut(s)	6, 25, 178, 213, 225, 233
CviQI	GTAC	2 cut(s)	133, 145
DdeI	CTNAG	3 cut(s)	48, 126, 165
Eco130I	CCWWGG	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	71
Eco81I	CCTNAGG	2 cut(s)	48, 126
EcoRV	GATATC	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaiI	YATR	3 cut(s)	100, 171, 218
Fnu4HI	GCNGC	5 cut(s)	20, 23, 202, 205, 234
Fsp4HI	GCNGC	5 cut(s)	20, 23, 202, 205, 234
GluI	GCNGC	5 cut(s)	20, 23, 202, 205, 234
GsaI	CCCAGC	1 cut(s)	178
HapII	CCGG	2 cut(s)	62, 95
HgaI	GACGC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	62, 95
HpyAV	CCTTC	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	3 cut(s)	48, 126, 165
KpnI	GGTACC	2 cut(s)	136, 148
LpnPI	CCDG	8 cut(s)	29, 35, 42, 75, 95, 108, 113, 188
Lsp1109I	GCAGC	5 cut(s)	31, 34, 213, 216, 220
LweI	GCATC	1 cut(s)	250
MnlI	CCTC	9 cut(s)	51, 57, 129, 135, 159, 162, 174, 189, 214
MspI	CCGG	2 cut(s)	62, 95
MwoI	GCNNNNNNNGC	1 cut(s)	210
NlaIV	GGNNCC	2 cut(s)	134, 146
PkrI	GCNGC	5 cut(s)	21, 24, 203, 206, 235
PspFI	CCCAGC	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	134, 146
PstNI	CAGNNNCTG	1 cut(s)	213
RsaI	GTAC	2 cut(s)	134, 146
RsaNI	GTAC	2 cut(s)	133, 145
SatI	GCNGC	5 cut(s)	20, 23, 202, 205, 234
SetI	ASST	3 cut(s)	8, 49, 127
SfaNI	GCATC	1 cut(s)	250
SsiI	CCGC	2 cut(s)	92, 107
StyI	CCWWGG	1 cut(s)	139
TaqI	TCGA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	5 cut(s)	19, 22, 201, 204, 233
TspRI	CASTG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.