Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Forward (+)

72923200 .. 72924376

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGTTACTACAATCAGCAGCAGGCTCCCGTTGGTGTTCCTCCTCCACAGGGTTATCCTCCAAAGGATGCTTACCCTCCACCTGGATACCCTCAACAAGGATACCCTCCTCAACAGGGGTACCCTCCACAAGGGTATCCTCAGCAGGGCTACCCACAACAAGGGTATCCACCACAACAGGGCTATGCTCAGCCTCCTCCTCACCAGAGCAGCTCTGGTTGCCTTGAAGGATGTTGCTTAATTGGTTCATGGATTCAGCAGGTGTCTAGCGGCGCTTTGCTGTTGTTGCATGTTGGATGCTTGCTTCTGAGAAGATTTGATGCTTCTTCACTGAACATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

114

Amino Acids

12.34

Weight (kDa)

6.68

Isoelectric Point (pI)

92.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
Acc65I	GGTACC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	120
AciI	CCGC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	8 cut(s)	50, 83, 98, 116, 131, 146, 161, 179
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	19, 210
Asp718I	GGTACC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	194
BaeI	ACNNNNGTAYC	6 cut(s)	104, 119, 137, 149, 152, 182
BanI	GGYRCC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	31, 222
BciT130I	CCWGG	1 cut(s)	84
BciVI	GTATCC	4 cut(s)	80, 95, 147, 177
BfaI	CTAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	250
BfuI	GTATCC	4 cut(s)	80, 95, 147, 177
BisI	GCNGC	3 cut(s)	20, 211, 271
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	3 cut(s)	21, 212, 272
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	27, 122
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	58, 287, 310
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	8 cut(s)	50, 83, 98, 116, 131, 146, 161, 179
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	73, 236, 302
BseLI	CCNNNNNNNGG	8 cut(s)	50, 83, 98, 116, 131, 146, 161, 179
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	155, 203, 299
BseRI	GAGGAG	4 cut(s)	33, 99, 186, 189
BseXI	GCAGC	2 cut(s)	31, 222
BshNI	GGYRCC	1 cut(s)	120
BslI	CCNNNNNNNGG	8 cut(s)	50, 83, 98, 116, 131, 146, 161, 179
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	270
BspCNI	CTCAG	3 cut(s)	154, 202, 300
BspLI	GGNNCC	2 cut(s)	27, 122
BspMI	ACCTGC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	24, 302
BstDEI	CTNAG	3 cut(s)	141, 189, 308
BstENI	CCTNNNNNAGG	2 cut(s)	96, 129
BstF5I	GGATG	3 cut(s)	73, 236, 302
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 286
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	31, 222
BsuI	GTATCC	4 cut(s)	80, 95, 147, 177
BtsCI	GGATG	3 cut(s)	73, 236, 302
BtsIMutI	CAGTG	1 cut(s)	329
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	24, 302
CfoI	GCGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	249, 290
CviJI	RGCY	5 cut(s)	26, 150, 183, 193, 213
CviKI_1	RGCY	5 cut(s)	26, 150, 183, 193, 213
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	3 cut(s)	141, 189, 308
EcoNI	CCTNNNNNAGG	2 cut(s)	96, 129
EcoRII	CCWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	252, 293
FaiI	YATR	3 cut(s)	186, 250, 291
FatI	CATG	2 cut(s)	248, 289
Fnu4HI	GCNGC	3 cut(s)	20, 211, 271
FokI	GGATG	3 cut(s)	80, 243, 309
Fsp4HI	GCNGC	3 cut(s)	20, 211, 271
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	3 cut(s)	20, 211, 271
HaeII	RGCGCY	1 cut(s)	276
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	252, 293
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	253
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 286
HpyF3I	CTNAG	3 cut(s)	141, 189, 308
Hsp92II	CATG	2 cut(s)	252, 293
HspAI	GCGC	1 cut(s)	273
KpnI	GGTACC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	2 cut(s)	31, 222
LweI	GCATC	3 cut(s)	58, 287, 310
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	2 cut(s)	318, 324
MluCI	AATT	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	274
MseI	TTAA	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	219, 286
NlaIII	CATG	2 cut(s)	252, 293
NlaIV	GGNNCC	2 cut(s)	27, 122
NspI	RCATGY	1 cut(s)	293
PaqCI	CACCTGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	21, 212, 272
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	27, 122
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	3 cut(s)	20, 211, 271
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	3 cut(s)	85, 215, 264
SfaNI	GCATC	3 cut(s)	58, 287, 310
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	82
TasI	AATT	1 cut(s)	240
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	336
TseI	GCWGC	2 cut(s)	19, 210
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	336
XagI	CCTNNNNNAGG	2 cut(s)	96, 129
XceI	RCATGY	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.