Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Reverse (-)

17063200 .. 17064601

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1187200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGTTACTACAATCAGCAGCAAGCTCCAGTTGGTGTTCCTCCTCCACAAGGGTATCCTCCAAAGGATGCTTACCCTCCACAGGGTTACCCTGAGCAGGGGTATCCACCTCAACAGGGTTACCCTCCACAGGGGTACCCACCACAGCAGGGCTATGCTCCCCAGTATGCTCAGCAGCCCCCTCCTAGGAAAGAAAGTGACGGTTGCCTTCAAGGATGTTTAGCAGCACTCTGCTGTTGTTGCCTCTTGGATGCTTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

88

Amino Acids

9.5

Weight (kDa)

4.44

Isoelectric Point (pI)

98.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYSTM	PF12734	54 - 87	5.7e-15	Cysteine-rich TM module stress tolerance

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
ApeKI	GCWGC	3 cut(s)	19, 175, 224
Asp718I	GGTACC	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	185
AvrII	CCTAGG	1 cut(s)	185
BaeI	ACNNNNGTAYC	4 cut(s)	38, 71, 119, 152
BanI	GGYRCC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	31, 187, 236
BciVI	GTATCC	2 cut(s)	66, 114
BfaI	CTAG	1 cut(s)	186
BfuI	GTATCC	2 cut(s)	66, 114
BisI	GCNGC	3 cut(s)	20, 176, 225
BlnI	CCTAGG	1 cut(s)	185
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	3 cut(s)	21, 177, 226
BmiI	GGNNCC	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	58, 241
BmuI	ACTGGG	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	29, 163
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	3 cut(s)	73, 221, 256
BseMII	CTCAG	2 cut(s)	84, 185
BseNI	ACTGG	2 cut(s)	29, 163
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	31, 187, 236
BshNI	GGYRCC	1 cut(s)	135
Bsp1720I	GCTNAGC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	85, 184
BspLI	GGNNCC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	29, 163
BssECI	CCNNGG	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	24, 256
BstDEI	CTNAG	2 cut(s)	93, 171
BstEII	GGTNACC	2 cut(s)	86, 119
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	73, 221, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstPI	GGTNACC	2 cut(s)	86, 119
BstV1I	GCAGC	3 cut(s)	31, 187, 236
BsuI	GTATCC	2 cut(s)	66, 114
BtsCI	GGATG	3 cut(s)	73, 221, 256
Cac8I	GCNNGC	2 cut(s)	24, 256
Csp6I	GTAC	1 cut(s)	136
CviJI	RGCY	3 cut(s)	26, 153, 178
CviKI_1	RGCY	3 cut(s)	26, 153, 178
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	93, 171
Eco130I	CCWWGG	1 cut(s)	185
Eco91I	GGTNACC	2 cut(s)	86, 119
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoO65I	GGTNACC	2 cut(s)	86, 119
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaiI	YATR	2 cut(s)	156, 168
Fnu4HI	GCNGC	3 cut(s)	20, 176, 225
FokI	GGATG	2 cut(s)	80, 228
Fsp4HI	GCNGC	3 cut(s)	20, 176, 225
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	3 cut(s)	20, 176, 225
GsuI	CTGGAG	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	2 cut(s)	93, 171
KpnI	GGTACC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	31, 163
LpnPI	CCDG	8 cut(s)	42, 68, 83, 101, 105, 116, 134, 176
Lsp1109I	GCAGC	3 cut(s)	31, 187, 236
LweI	GCATC	2 cut(s)	58, 241
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	4 cut(s)	5, 86, 119, 197
MnlI	CCTC	8 cut(s)	51, 54, 69, 87, 120, 135, 192, 254
MwoI	GCNNNNNNNGC	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	21, 177, 226
PspEI	GGTNACC	2 cut(s)	86, 119
PspN4I	GGNNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SatI	GCNGC	3 cut(s)	20, 176, 225
SetI	ASST	2 cut(s)	28, 112
SfaNI	GCATC	2 cut(s)	58, 241
SspMI	CTAG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	3 cut(s)	19, 175, 224
Tsp45I	GTSAC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	48
XmaJI	CCTAGG	1 cut(s)	185
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.