Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Reverse (-)

10371368 .. 10373374

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAGTCACTACAATCAGCACCAGGCTCCGGTTGGTGTCCCTCCTCCTCAGGGTTACCCTCCCAAGGATGCATACCCTCCTCCAGGGTACCCTCCACAAGGGTATGCACCTCAACAGGGCTACCCACAGCAGGGATACCCACAGCAGGGATACCCACAACAGGGCTACCCACCACAACAGGGATATGCTCAGCCTCCTCCTCAACAGAAGAGCTCTAGTTGCCTTGAAGGATGTCTAGCGGCGCTTTGCTGTTGTTGCTTGTTGGATGCTTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

93

Amino Acids

9.96

Weight (kDa)

5.95

Isoelectric Point (pI)

102.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	87
AciI	CCGC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	21, 82
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw21I	GWGCWC	1 cut(s)	215
Asp718I	GGTACC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	244
AxyI	CCTNAGG	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	23, 84
BciVI	GTATCC	2 cut(s)	128, 143
BfaI	CTAG	2 cut(s)	216, 236
BfoI	RGCGCY	1 cut(s)	245
BfuI	GTATCC	2 cut(s)	128, 143
BisI	GCNGC	1 cut(s)	240
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	23, 84
BmiI	GGNNCC	2 cut(s)	27, 89
BmrFI	CCNGG	2 cut(s)	23, 84
BmsI	GCATC	2 cut(s)	58, 256
BpmI	CTGGAG	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	63, 83
BsaWI	WCCGGW	1 cut(s)	28
Bse21I	CCTNAGG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	23, 84
BseDI	CCNNGG	2 cut(s)	63, 83
BseGI	GGATG	3 cut(s)	73, 236, 271
BseMII	CTCAG	2 cut(s)	62, 203
BseRI	GAGGAG	5 cut(s)	33, 36, 69, 186, 189
BshNI	GGYRCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	61, 202
BspLI	GGNNCC	2 cut(s)	27, 89
BspQI	GCTCTTC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	63, 83
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	23, 84
Bst6I	CTCTTC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	48, 189
BstEII	GGTNACC	1 cut(s)	53
BstENI	CCTNNNNNAGG	2 cut(s)	81, 96
BstF5I	GGATG	3 cut(s)	73, 236, 271
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 255
BstNI	CCWGG	2 cut(s)	23, 84
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	21, 82
Bsu36I	CCTNAGG	1 cut(s)	48
BsuI	GTATCC	2 cut(s)	128, 143
BtsCI	GGATG	3 cut(s)	73, 236, 271
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	5 cut(s)	26, 120, 165, 193, 213
CviKI_1	RGCY	5 cut(s)	26, 120, 165, 193, 213
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	48, 189
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	213
Eco81I	CCTNAGG	1 cut(s)	48
Eco91I	GGTNACC	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	213
EcoNI	CCTNNNNNAGG	2 cut(s)	81, 96
EcoO65I	GGTNACC	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	21, 82
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	63
FaiI	YATR	3 cut(s)	73, 105, 186
FaqI	GGGAC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	80, 243
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	216, 236
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	245
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	71, 107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 255
HpyF3I	CTNAG	2 cut(s)	48, 189
HspAI	GCGC	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	91
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	31
LweI	GCATC	2 cut(s)	58, 256
MaeI	CTAG	2 cut(s)	216, 236
MaeIII	GTNAC	2 cut(s)	5, 53
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	73
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	23, 84
MvaI	CCWGG	2 cut(s)	23, 84
MwoI	GCNNNNNNNGC	2 cut(s)	219, 255
NlaIV	GGNNCC	2 cut(s)	27, 89
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	21, 82
PspEI	GGTNACC	1 cut(s)	53
PspGI	CCWGG	2 cut(s)	21, 82
PspN4I	GGNNCC	2 cut(s)	27, 89
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	215
SapI	GCTCTTC	1 cut(s)	203
SatI	GCNGC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	23, 84
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	2 cut(s)	112, 215
SfaNI	GCATC	2 cut(s)	58, 256
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	216, 236
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	21, 82
StyI	CCWWGG	1 cut(s)	63
TauI	GCSGC	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
XagI	CCTNNNNNAGG	2 cut(s)	81, 96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XspI	CTAG	2 cut(s)	216, 236
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.