Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Reverse (-)

16184991 .. 16187130

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G146400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAGCTATTACAACCAGCAACAGCCTCCTGTTGGTGTTCCTCCACCTCAAGGTTATCCACCGGAAGGATATCCCAAGGATGCTTATCCACCAGCGGGCTATCCCCCTCAGGGATATCCTCAACAGGGATACCCTCCACCACAGGGCTACCCACAACAGTACCCTCCTCCCTATGCCCCTCAGTATGCCCAGCCTCCCCCTCAACAACAAAGCAGTAGCAGTGGCTGCTTGGAGGGCTGTTTGGCTGCTCTGTGCTGTTGCTGTCTGCTGGATGCTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM XYPPX

Protein Analysis

95

Amino Acids

10.17

Weight (kDa)

4.05

Isoelectric Point (pI)

109.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	7 cut(s)	32, 50, 65, 95, 110, 125, 143
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
AlwNI	CAGNNNCTG	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	225, 245
AxyI	CCTNAGG	1 cut(s)	108
BaeI	ACNNNNGTAYC	2 cut(s)	143, 176
BbvI	GCAGC	2 cut(s)	212, 232
BciVI	GTATCC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	226, 246
BlsI	GCNGC	2 cut(s)	227, 247
BmsI	GCATC	2 cut(s)	70, 262
BpuEI	CTTGAG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 50, 65, 95, 110, 125, 143
Bse21I	CCTNAGG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	85, 277
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	7 cut(s)	32, 50, 65, 95, 110, 125, 143
BseMII	CTCAG	2 cut(s)	122, 194
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	212, 232
BseYI	CCCAGC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	7 cut(s)	32, 50, 65, 95, 110, 125, 143
BspACI	CCGC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	121, 193
BssECI	CCNNGG	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	97, 277
BstDEI	CTNAG	2 cut(s)	108, 180
BstF5I	GGATG	2 cut(s)	85, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 234
BstV1I	GCAGC	2 cut(s)	212, 232
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	85, 277
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	97, 277
CaiI	CAGNNNCTG	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	160
CviJI	RGCY	8 cut(s)	6, 25, 99, 147, 193, 225, 237, 245
CviKI_1	RGCY	8 cut(s)	6, 25, 99, 147, 193, 225, 237, 245
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	108, 180
Eco130I	CCWWGG	1 cut(s)	75
Eco32I	GATATC	2 cut(s)	71, 116
Eco81I	CCTNAGG	1 cut(s)	108
EcoRV	GATATC	2 cut(s)	71, 116
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	2 cut(s)	174, 186
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	226, 246
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	226, 246
GluI	GCNGC	2 cut(s)	226, 246
GsaI	CCCAGC	1 cut(s)	193
HapII	CCGG	1 cut(s)	62
HpaII	CCGG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 234
HpyF3I	CTNAG	2 cut(s)	108, 180
LpnPI	CCDG	9 cut(s)	29, 42, 75, 95, 105, 110, 128, 203, 254
Lsp1109I	GCAGC	2 cut(s)	212, 232
LweI	GCATC	2 cut(s)	70, 262
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	225, 234
PkrI	GCNGC	2 cut(s)	227, 247
PspFI	CCCAGC	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	225
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SatI	GCNGC	2 cut(s)	226, 246
SetI	ASST	3 cut(s)	8, 49, 55
SfaNI	GCATC	2 cut(s)	70, 262
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SsiI	CCGC	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	159
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	2 cut(s)	225, 245
TspRI	CASTG	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.