Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Reverse (-)

19574128 .. 19574460

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGTTACTACAATCAGCAGCAGGCTCCAGTTGGTGTTCCTCCTCCACAGGGTATGTGGGTTTTTGGTCTCTTGCATGTTGGCTTTGCTTTGTTATTTGTTGGATTTGGGTTTGATTTTGATTTTTTTTTTGTTGTTGTTGAAATAGGTTATCCTCCAAAGGATGCTTACCCTCCACCTGGATACCCTCAACAAGGATACCCTCCTCAACAGGGGTACCCTCCACAAGGGTATCCTCAGCAGGGCTACCCACAACAAGGGTATCCACCACAACAGGGCTATGCTCAGCCTCCTCCACACCAGAGCAGCTCTGGTTGCCTTGAAGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

4.42

Isoelectric Point (pI)

78.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	8 cut(s)	50, 179, 194, 212, 227, 242, 257, 275
AgsI	TTSAA	2 cut(s)	143, 323
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	1 cut(s)	309
AluI	AGCT	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	19, 306
Asp718I	GGTACC	1 cut(s)	216
BaeI	ACNNNNGTAYC	6 cut(s)	200, 215, 233, 245, 248, 278
BanI	GGYRCC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	31, 318
BccI	CCATC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	4 cut(s)	176, 191, 243, 273
BcoDI	GTCTC	1 cut(s)	74
BfuI	GTATCC	4 cut(s)	176, 191, 243, 273
BisI	GCNGC	2 cut(s)	20, 307
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	2 cut(s)	21, 308
Bme1390I	CCNGG	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	27, 218
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	8 cut(s)	50, 179, 194, 212, 227, 242, 257, 275
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	169, 332
BseLI	CCNNNNNNNGG	8 cut(s)	50, 179, 194, 212, 227, 242, 257, 275
BseMII	CTCAG	2 cut(s)	251, 299
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	3 cut(s)	33, 195, 282
BseXI	GCAGC	2 cut(s)	31, 318
BshNI	GGYRCC	1 cut(s)	216
BslI	CCNNNNNNNGG	8 cut(s)	50, 179, 194, 212, 227, 242, 257, 275
BsmAI	GTCTC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	74
Bsp1720I	GCTNAGC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	250, 298
BspLI	GGNNCC	2 cut(s)	27, 218
BspT107I	GGYRCC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	237, 285
BstENI	CCTNNNNNAGG	2 cut(s)	192, 225
BstF5I	GGATG	2 cut(s)	169, 332
BstMAI	GTCTC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	31, 318
BsuI	GTATCC	4 cut(s)	176, 191, 243, 273
BtsCI	GGATG	2 cut(s)	169, 332
Cac8I	GCNNGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	6 cut(s)	26, 84, 246, 279, 289, 309
CviKI_1	RGCY	6 cut(s)	26, 84, 246, 279, 289, 309
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	237, 285
Eco31I	GGTCTC	1 cut(s)	74
EcoNI	CCTNNNNNAGG	2 cut(s)	192, 225
EcoRII	CCWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	80
FaiI	YATR	3 cut(s)	56, 78, 282
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	20, 307
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	20, 307
GluI	GCNGC	2 cut(s)	20, 307
GsuI	CTGGAG	1 cut(s)	12
Hin1II	CATG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	2 cut(s)	237, 285
Hsp92II	CATG	1 cut(s)	80
KpnI	GGTACC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	2 cut(s)	31, 318
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	315
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	27, 218
NspI	RCATGY	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	21, 308
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	27, 218
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SatI	GCNGC	2 cut(s)	20, 307
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	3 cut(s)	151, 181, 311
SfaNI	GCATC	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	178
TseI	GCWGC	2 cut(s)	19, 306
XagI	CCTNNNNNAGG	2 cut(s)	192, 225
XceI	RCATGY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.