Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Reverse (-)

13436749 .. 13437750

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCGGATATGACATTTTAGAGTCTCTTAGCGTGCACAATCCAGCTGCAGACAAGTTTGCCAAAGCCCTTATGCTTTGTCATTCCCTCTGGCGTGCTCGGAATCGTCTAATCTTTCGTAATTCTGTCTCCACCCCTGCCGAGTCCCATTGTAGCCATGAGCAAAATCTTGGGCATCTTGACATCTTGTTAGCTGAAGCAGTTGCTCTTCGTGATGGTCTCCTTCATCTGTCTCAACTCACTTCTCAGCAGTTGATTATTGAAGACATTCAAGCCTTAGCGCGTCGCTTTTCCTCGGTCTCATTCTCTCATGTCTGGCGGGAAGCCAATTTTCTAGCTGATAGTCTGGCAGTTCTTGGTCATTCTACTTCTTCCACTTTGTTTTGGTTTTCTGAGTTGCCCCTGTCTGTGAGCCCTGCCTTCCAGTTTGATCTTTTTGGGGGCGGTTGTGCTCGGGAGTTTTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

156

Amino Acids

17.3

Weight (kDa)

6.02

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	84 - 117	3.3e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	283
AciI	CCGC	2 cut(s)	319, 444
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	263, 272
AluBI	AGCT	3 cut(s)	47, 194, 338
AluI	AGCT	3 cut(s)	47, 194, 338
Alw21I	GWGCWC	3 cut(s)	39, 100, 454
Alw26I	GTCTC	5 cut(s)	30, 133, 224, 237, 304
Alw44I	GTGCAC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	453
BaeGI	GKGCMC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	3 cut(s)	39, 100, 454
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	209
BcoDI	GTCTC	5 cut(s)	30, 133, 224, 237, 304
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	277
BsaI	GGTCTC	2 cut(s)	224, 304
BsaJI	CCNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	260, 384
BseNI	ACTGG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	3 cut(s)	39, 100, 454
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	130
BsmAI	GTCTC	5 cut(s)	30, 133, 224, 237, 304
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	224, 304
BsoBI	CYCGRG	1 cut(s)	453
Bsp1286I	GDGCHC	4 cut(s)	39, 100, 416, 454
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	2 cut(s)	319, 444
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	259, 385
BspFNI	CGCG	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	213
BspTNI	GGTCTC	2 cut(s)	224, 304
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	35, 96
BstDEI	CTNAG	4 cut(s)	29, 246, 277, 393
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	5 cut(s)	30, 133, 224, 237, 304
BstMBI	GATC	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	39
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	35, 96
CfoI	GCGC	1 cut(s)	283
CseI	GACGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	158, 311
CviJI	RGCY	9 cut(s)	5, 47, 68, 156, 194, 275, 326, 338, 414
CviKI_1	RGCY	9 cut(s)	5, 47, 68, 156, 194, 275, 326, 338, 414
DdeI	CTNAG	4 cut(s)	29, 246, 277, 393
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	2 cut(s)	224, 304
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	2 cut(s)	161, 314
FaiI	YATR	4 cut(s)	12, 74, 159, 312
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	157, 310
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	161, 314
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	3 cut(s)	23, 103, 143
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	102, 394
Hpy188III	TCNNGA	3 cut(s)	179, 212, 455
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	233, 430
HpyCH4V	TGCA	2 cut(s)	37, 50
HpyF3I	CTNAG	4 cut(s)	29, 246, 277, 393
Hsp92II	CATG	2 cut(s)	161, 314
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	430
LguI	GCTCTTC	1 cut(s)	213
LpnPI	CCDG	9 cut(s)	19, 57, 76, 150, 301, 332, 416, 429, 437
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	335
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	3 cut(s)	200, 275, 363
MhlI	GDGCHC	4 cut(s)	39, 100, 416, 454
MluCI	AATT	2 cut(s)	121, 328
MlyI	GAGTC	2 cut(s)	32, 152
MnlI	CCTC	2 cut(s)	98, 304
MroXI	GAANNNNTTC	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	283
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	2 cut(s)	161, 314
NmeAIII	GCCGAG	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	31, 151
PpsI	GAGTC	2 cut(s)	31, 151
PstI	CTGCAG	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	213
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	430
SchI	GAGTC	2 cut(s)	32, 152
SduI	GDGCHC	4 cut(s)	39, 100, 416, 454
SetI	ASST	3 cut(s)	49, 196, 340
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	48
Sse9I	AATT	2 cut(s)	121, 328
SsiI	CCGC	2 cut(s)	319, 444
SspMI	CTAG	1 cut(s)	335
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	2 cut(s)	121, 328
TfiI	GAWTC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	215, 453
VneI	GTGCAC	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.