Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004625

Physical Location & Seq

Genomic Coordinates Reverse (-)

20989400 .. 20992523

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1101800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGCTACTACAACCAGCAGCAGCCCCCCGTTGGCGTTCCTCCACCTCAAGGTTATCCACCGGAAGGATATCCCAAAGACGCTTATCCGCCGCCGGGATATCCACCGCAGGGATACCCTCCACCTCAGGGGTACCCCCAAGGGTACCCTCCTCCCTACGCCCCTCAGTACGCCCAGCCTCCCCCTCAACAACAGAACAACAGCAGTGGCCTCATGGAGGGCTGGTATTTTGGCTGCTCTGTGCTGTTGCTGTCTGCTAGATGCTTGCTTTTGAATGGAGTTTTGGATCAAAACTATGAAGTGAAAGTGAAAGTCCATTTGATTGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM XYPPX

Protein Analysis

111

Amino Acids

12.15

Weight (kDa)

5.54

Isoelectric Point (pI)

71.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67600
fragaria_vesca	FvH4_1g17840 FvH4_2g03720 FvH4_2g03720
malus_domestica	MD02G1187200.v1.1 MD05G1101800.v1.1 MD10G1107500.v1.1
prunus_persica	Prupe.6G219500_v2.0.a1 Prupe.6G219500_v2.0.a1 Prupe.8G146400_v2.0.a1 Prupe.8G146400_v2.0.a1
pyrus_communis	pycom02g15230 pycom05g10010
rosa_chinensis	RchiOBHm_Chr2g0108271 RchiOBHm_Chr6g0252691
rosa_multiflora	Rmu_sc0004969.1_g000015 Rmu_sc0005742.1_g000003 Rmu_sc0010160.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135330 Rroxscaffold_7G00212480
rosa_rugosa	Rorug02G0152000 Rorug05G0537800
rosa_samantha	Rh2AG200500 Rh2CG205200 Rh2DG208000 Rh6AG054200 Rh6BG048100 Rh6CG046800 Rh6DG042300
rosa_wichuraiana	Rw2G015950 Rw6G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	132, 144
AccB1I	GGYRCC	2 cut(s)	132, 144
AciI	CCGC	3 cut(s)	89, 92, 107
AclWI	GGATC	1 cut(s)	294
AfaI	GTAC	3 cut(s)	134, 146, 170
AfiI	CCNNNNNNNGG	7 cut(s)	32, 50, 65, 95, 110, 128, 217
AgsI	TTSAA	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	19, 22, 234
Asp718I	GGTACC	2 cut(s)	132, 144
AsuC2I	CCSGG	1 cut(s)	96
AxyI	CCTNAGG	1 cut(s)	126
BanI	GGYRCC	2 cut(s)	132, 144
BbvI	GCAGC	3 cut(s)	31, 34, 221
BciVI	GTATCC	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	4 cut(s)	20, 23, 92, 235
BlsI	GCNGC	4 cut(s)	21, 24, 93, 236
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	134, 146
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 50, 65, 95, 110, 128, 217
Bse21I	CCTNAGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	7 cut(s)	32, 50, 65, 95, 110, 128, 217
BseMII	CTCAG	2 cut(s)	140, 179
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	31, 34, 221
BseYI	CCCAGC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	2 cut(s)	132, 144
BsiSI	CCGG	2 cut(s)	62, 95
BslI	CCNNNNNNNGG	7 cut(s)	32, 50, 65, 95, 110, 128, 217
BsnI	GGCC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	3 cut(s)	89, 92, 107
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	139, 178
BspLI	GGNNCC	2 cut(s)	134, 146
BspPI	GGATC	1 cut(s)	294
BspT107I	GGYRCC	2 cut(s)	132, 144
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	126, 165
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	31, 34, 221
BstXI	CCANNNNNNTGG	1 cut(s)	323
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	266
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	133, 145, 169
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	6, 25, 178, 210, 222, 234
CviKI_1	RGCY	6 cut(s)	6, 25, 178, 210, 222, 234
CviQI	GTAC	3 cut(s)	133, 145, 169
DdeI	CTNAG	2 cut(s)	126, 165
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	139
Eco32I	GATATC	2 cut(s)	71, 101
Eco81I	CCTNAGG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoRV	GATATC	2 cut(s)	71, 101
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	217
FaiI	YATR	2 cut(s)	215, 297
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	20, 23, 92, 235
Fsp4HI	GCNGC	4 cut(s)	20, 23, 92, 235
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	4 cut(s)	20, 23, 92, 235
GsaI	CCCAGC	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	62, 95
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	217
HpaII	CCGG	2 cut(s)	62, 95
HpyAV	CCTTC	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	126, 165
Hsp92II	CATG	1 cut(s)	217
KpnI	GGTACC	2 cut(s)	136, 148
Kzo9I	GATC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	29, 75, 95, 108, 113, 188, 208
Lsp1109I	GCAGC	3 cut(s)	31, 34, 221
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	258
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MspI	CCGG	2 cut(s)	62, 95
MspR9I	CCNGG	1 cut(s)	96
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	134, 146
PkrI	GCNGC	4 cut(s)	21, 24, 93, 236
PspFI	CCCAGC	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	134, 146
RsaI	GTAC	3 cut(s)	134, 146, 170
RsaNI	GTAC	3 cut(s)	133, 145, 169
SatI	GCNGC	4 cut(s)	20, 23, 92, 235
Sau3AI	GATC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	4 cut(s)	8, 49, 55, 127
SfaNI	GCATC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SsiI	CCGC	3 cut(s)	89, 92, 107
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	139
TauI	GCSGC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	3 cut(s)	19, 22, 234
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	215
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.