Rmu_sc0005742.1_g000003

Cysteine-rich and transmembrane domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005742.1
Physical Location & Seq
Reverse (-)
4973 .. 6056
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005742.1_g000003.1.cds

Sequence Viewer

Length: 279 bp
atgagttactacaatcagcagcaggctccagttggtgttcctcctccacagggttatcctccaaaggatgcttaccctccaccaggataccctcaacaaggataccctcctcaacaggggtaccctccacaagggtatcctcagcagggctacccacaacaagggtatccaccacaacagggctatgctcagcctcctccacaccagagcagttctggttgccttgaaggatgtctagcggcactttgctgttgttgcatgctcgatgcttgcttctga

Protein Analysis

92

Amino Acids

9.95

Weight (kDa)

4.53

Isoelectric Point (pI)

100.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 120
AciI CCGC 1 cut(s) 239
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 8 cut(s) 50, 83, 98, 116, 131, 146, 161, 179
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 19
Asp718I GGTACC 1 cut(s) 120
BaeI ACNNNNGTAYC 6 cut(s) 104, 119, 137, 149, 152, 182
BanI GGYRCC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 84
BciVI GTATCC 4 cut(s) 80, 95, 147, 177
BfaI CTAG 1 cut(s) 236
BfuI GTATCC 4 cut(s) 80, 95, 147, 177
BisI GCNGC 2 cut(s) 20, 240
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 2 cut(s) 21, 241
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 27, 122
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 58, 256
BpmI CTGGAG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 8 cut(s) 50, 83, 98, 116, 131, 146, 161, 179
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 73, 236
BseLI CCNNNNNNNGG 8 cut(s) 50, 83, 98, 116, 131, 146, 161, 179
BseMII CTCAG 2 cut(s) 155, 203
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 3 cut(s) 33, 99, 186
BseXI GCAGC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 120
BslI CCNNNNNNNGG 8 cut(s) 50, 83, 98, 116, 131, 146, 161, 179
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 2 cut(s) 154, 202
BspLI GGNNCC 2 cut(s) 27, 122
BspT107I GGYRCC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 24, 260, 271
BstDEI CTNAG 2 cut(s) 141, 189
BstENI CCTNNNNNAGG 3 cut(s) 81, 96, 129
BstF5I GGATG 2 cut(s) 73, 236
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 31
BsuI GTATCC 4 cut(s) 80, 95, 147, 177
BtsCI GGATG 2 cut(s) 73, 236
Cac8I GCNNGC 3 cut(s) 24, 260, 271
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 259
CviJI RGCY 4 cut(s) 26, 150, 183, 193
CviKI_1 RGCY 4 cut(s) 26, 150, 183, 193
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 141, 189
EcoNI CCTNNNNNAGG 3 cut(s) 81, 96, 129
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 262
FaiI YATR 2 cut(s) 186, 260
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 20, 240
FokI GGATG 2 cut(s) 80, 243
Fsp4HI GCNGC 2 cut(s) 20, 240
FspBI CTAG 1 cut(s) 236
GluI GCNGC 2 cut(s) 20, 240
GsuI CTGGAG 1 cut(s) 12
Hin1II CATG 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 141, 189
Hsp92II CATG 1 cut(s) 262
KpnI GGTACC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 58, 256
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 255
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 27, 122
NspI RCATGY 1 cut(s) 262
PaeI GCATGC 1 cut(s) 262
PkrI GCNGC 2 cut(s) 21, 241
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 27, 122
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 2 cut(s) 20, 240
ScrFI CCNGG 1 cut(s) 84
SfaNI GCATC 2 cut(s) 58, 256
SphI GCATGC 1 cut(s) 262
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 82
TaqI TCGA 1 cut(s) 264
TauI GCSGC 1 cut(s) 242
TseI GCWGC 1 cut(s) 19
XagI CCTNNNNNAGG 3 cut(s) 81, 96, 129
XceI RCATGY 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.