Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002065

Physical Location & Seq

Genomic Coordinates Forward (+)

5102325 .. 5111758

Gene Structure 9434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5433 bp

ATGGGCACCCCTGACAACAAATTTACCGAGCTAGTTGACATTTTCAAGTCTTGGATGCCAAGGAGAACCGAGCCAACCAATGTGTCCCGGGACTTTTGGATGCCCGATCAGAGCTGTAGGGTATGCTATGATTGTGATTCCCAGTTCACAGTATTTAATCGGAGGCATCATTGCCGCCTATGTGGCCGAGTGTTCTGTGCTAGGTGTACAGCAAACTCTATTCCTGCCCCGTCTGATGAGCCAAGAATTGGTAGGGAAGATGGGGAGAAGATTAGGGTCTGTAATTTTTGCTTCAAGCAATGGGAGCAAGGGATAGCAGCAGTTAATAATGGGCCCCCTGAATCTAGCCCTGGCCTCAGTCCATCGCCATCTACAGCAAGCTTGGTCAGCACCAAGTCAAGCTGCACCTTCCATAGTAGCAGCAGCACTGTTGGTTCTACCCCTTATTCGACTGGACCTTACCAGCGCGTGCCCTATAGTTCTGGTCTTAGCCCCAAACAATCTTGCCAAGATGATTCAGTTACTGGCCAGCAAGACAATATAACGTCTCAGAGGAGCATTAGTCCTGATGCTGCAATGGCAGAATCGTGTCCTGACCAGTTTGGCTTTTGCATGGACAGGAGTGATGATGAGGATGATGACTATGGTGTTTATCATTCAGATTCAGAATCAAGACATTTCTCCCATGCCAATGACTATTATGGTGCAATCAATAACGAGGAGTTTGATAGTGTGTATGAACCACAAAAAGTGCATTCTGATGGAGAAAACACAGATGCAAAAAGTTTGAACTCCTTTTCACCTGAGAAGTTTGATACACAGGGTGTAGTGGGAACAAAACTTGAGGAAGAATCAGATCATCATGATAATGGTGATGAATGTAAAACTTCTCCATATGACATGGAGACTACAAATGCAGAACCGGTGGATTTTGAGAATAATGGGCTACTATGGCTCCCGCCAGAACCCGAGGATGAAGAAGATGAGAGAGAAGCCGACTTATTTGATGATGATGATGACGATGAGGGTGGTGGGGGTGGTCGGGGTGGTGGTGCTACAGGGGAGTGGGGATATCTTCATTCTTCAAACAGTGTTGGTGGTGGGGAGTGTCGTACTAGGGAGAAGTCAATTGAGGAGCACAGGAAGGCGATGAAGAATGTGGTGGAAGGTCATTTTAGAGCTCTGGTGTCTCAGCTTTTGCAGGTGGAGAACCTGCCTTTGATTGATGAAAATTACAAAGAGACCTGGTTGGACATAATTACGTCTTTGTCATGGGAAGCTGCCACACTTCTTAAACCAGATACAAGCAAAGGGGGAGGAATGGATCCTGGGGGATATGTGAAGGTTAAATGCATAGCTTGTGGCAATCGGAGCGAGAGCATGGTGGTTAAAGGAGTTGTTTGCAAGAAAAATGTGGCTCATCGGCGTATGACTTCAAAGATAGAGAAACCACGTTTCTTGATCCTTGGAGGAGCTTTGGAATATCAGCGTGTATCAAACCACTTGTCCAGCTTTGATACTTTGTTGCAGCAGGAAATGGACCATCTGAAGATGGCAGTTGCTAAGATTGACGCACATCACCCTAATGTTCTATTGGTGGAGAAGTCTGTATCCCGGTATGCTCAAGAGTATCTTCTTGCGAAAGACATATCGCTTGTTCTGAATATTAAGAGACCACTTTTGGAGCGAATCTCACGTTGCACTGGGGCACAAATAGTCCCTTCAATAGATCATCTTACATCACCAAAACTGGGGTATTGTGACATGTTCCATGTGGAGAAATTTCTTGAAGTGCATGGCAGTGCTGGGCAAGGTGGGAAGAAATTGACAAAGACTCTGATGTTCTTTGAAGGTTGCCCAAAGCCATTGGGTGTTACTATATTGCTGAAGGGTGCTAATGGGGATGAATTAAAGAAGGTGAAACATGTTGTACAGTATGGAGTTTTCGCAGCTTATCACTTGGCTTTGGAGACCTCTTTTTTAGCTGATGAAGGTGCTTCCCTTTCGGAACTTCCTCTGAAGTCGGTGATAACTGTATTGCCTGATAAACCCTCAAGTATCGACAGGTCCATTTCTATCATACCTGGTTTTAGTGTACCAGCAGCTGGCAAGCCACAGAGTTCCGATCCTAGAAGTGAACTGCAGAACTCAAATAAAGGCTTCATTTCAGATAGTGGCTCATTTACTACAGTTGCCTCCATTTTAAAGATCGAAGGCTCCAATCCGGTCCCCTTATCTAATGCTACATGTTCTCAGCCTTCTTCTGTAAAACATACCTCGAATCCTATAGAATATATCTCTCCCTTCACTTCCTTGTCTCCCCCAGGACAGGGTACGATAGACTTCTACCATAAAGAGCTTTCTTCAGTTTGTGCCTCTGAGGACATTCAGGATGTAAGTTCTAAAGAATCTTGTCTGGTCAAAACATCTAACGGAGGCGAGGCATTACGGGATAATTTGATCTCTAATTCTTTTAGCACCTCAGAGGCATTTGGACATGGTGGTGGAAACGGCAATGCTGATGGTGTTGCTTTAGCTGCAAATCTTAGAGAGACACCAGAGCTTCCATCCATAAAATATCTTACTGATAATCAGAATGAGGAGGTGGGATCTTCAAAGGAAGAGTTTCCCCCCTCACCATCAGACCACCAAAGCATTTTGGTTTCCCTATCAACACGTTGTGTGTGGAAGGGAACTGTATGTGAACGGGCCCATCTATTTCGAATCAAATACTATGGAAGCTTTGATAAGCCTCTTGGGAGGTTTTTACGAGACCATCTGTTTGATCAGGGTTACCTCTGTCGTTCATGTGGGATGCCCTCAGAAGCGCATATTCATTGTTATACTCATAGACAAGGGAGCCTTACAATATCTGTTAAGAAGCTCCCAGAGACCTTCCTACCAGGGGAAAAGGAAGGCAAAATATGGATGTGGCATAGGTGCTTGAGGTGTCCTCGGACCAGTGGCTTCCCTCCAGCCACTCGTAGAGTAGTAATGTCTGATGCTGCTTGGGGTTTATCTTTTGGGAAATTCTTGGAATTGAGCTTTTCAAATCATGCAGCTGCAAACAGAGTTGCAAGCTGTGGTCATTCCCTGCACAGAGATTGTCTTCGGTTTTATGGCTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCCTCAATTCATATTCACTCTGTTTGTCTTCCTCCACCAAAACTGGAATTTTACTACGATAATCAGGAATGGCTTCAAAAAGAAGCTCATGAGGTGGGCAACCGGGCGGAGCTTCTATTCAATGACTTATGTAATGCTCTTCATCAGATTTTAGAAAAAATACCAGCTGCAGAGACACAGGATGGTGGCAAGAAAGTACCTGAATCAACTCATCAAATTGTAGAACTTGAAGGGATGCTTCAAAAGGAAAGGGAAGACTTTGAGGAATCATTACAAAAAGTGATAAAGGGGGAGGTGAAATCTGGCCAGCCTGCAATTGATATTCTTGAGATCAATAAATTACGGAGGCAGTTACTCTTCCACTCTTATGTTTGGGACCAGCGCCTTATTCATGCAGCCAGTCTAGGCAATCATAATCTTCAGGAAGGTTTAACCAGTTCCATTACCAAACTGAAGGAGAAACCTATTGGCACGGAGAAACCTGTCAAGATAACAGGAAAAGGTTTCAGTAGTAGTACATCTCTTCCGGAAATCAAGTCTGGTATAAATCTTATCCAAGGAGGGGATGCTGGCTACTTTAGCCAGAAGGGAGGGGTTCAGAACAGAACTGAAATGGGTCTGGACACAGATCATGGGAACGAGACCTCTGCAAATGTCTCTGATAAATCTGATCCTTTGGAGTCTGGAAAAATTGTACAAACAGGGCTCTCGGAAGATAATGAATGTTCAGCTGTGGAAAGTTTATCTGACACCCTTGATGCGGCTTGGACTGGTACAACACCTAGAGAGAATGGATATTCACTTCCTCATTCAACCATGGTAAAATCTTCAAATGTGGTCAAAAGTGTTGCCTCGGTGGCAGAAAATGGTACTGTTGACCAAGGTGGGGTACAGACAACTCGTTCTGTTAGTTCTGCATCTCCTGCTGTCACTAGTTCATTCAGTAAAAGTGTTTCCTTTAACACTCAAAAGCTCTGTATTGGTGACCAGAGTCCTGTCTATGTCACACGGTTCCGGGAACTGGAACGGCAAACTGGTGCCAGGTTGCTACTGCCCATCGGTGTTAATGATACTGTTATCCCTGTTTTCGACGATGAGCCCACTAGTGTTATTGCATATACCCTTGTCTCTCCTAATTATCATTTGCAGATTGCTGAACCTGAGAGATCAAAAGAAGCTCTTGATTCTGCAATCTCGTTACCGTTTTTTGATTCAGCGAATCTTCTCTCACTGAATTCTTTTGATGAGGCAGTATCTGAGAACTACAGAGGTCTTGGTTCTTCTGATGACATCATATCCATGTCACATTCACGGAGTTCTGATTCTCTAATGTCAAAGGATACACATGCTAGAGTATCCTTTACAGATGAGGGGCCCCTCGGTAAGGTGAAGTATACAGTGACTTGCTACTACGCGTCCCAGTTTGAGGCATTAAGGAAAGCATGTTGCCCTTCTGAATTAGATTTTGTTCGGTCTCTTAGCCGCTGTAAGAAGTGGGGTGCCCAGGGTGGAAAGAGCAACGTTTTCTTTGCTAAAACCTTGGATGATCGGTTTATCATAAAACAAGTCACAAAGACAGAGCTGGAATCATTTATCAAGTTTGCACCAGCTTATTTCAAGTATTTGTCTGATTCAATCAGTACTAGAAGCCCAACTTGCTTAGCAAAGATCCTGGGTATTTATCAGGTGTCAACAAAGCTCGGTAAAGCAGGGAAAGAGACGAAGATGGATGTCTTAGTAATGGAAAATCTATTATTTAGACGCAATGTCTCACGGCTCTATGACCTGAAAGGATCTTCTCGATCACGTTATAATGCAGATACAAGCGGGAGCAATAAAGTGCTACTGGACCAGAACCTGATTGAAGCAATGCCAACGTCTCCAATTTTTGTGGGGAACAGGGCAAAGCGGCTATTGGAAAGAGCTGTCTGGAATGATACTGCATTCCTTGCTTCGGTCGATGTGATGGACTACTCATTACTGGTTGGAGTAGATGAGGAAAAGCACGAGCTAGCTTTGGGGATCATTGATTTCATGAGGCAATATACTTGGGACAAGCACCTTGAAACTTGGGTGAAGGCCTCAGGCATTCTCGGAGGACCGAAGAACACATCTCCAACCGTGATTTCACCCCAGCAGTATAAGAAACGTTTCAGGAAAGCTATGGCTACTTATTTTCTTATGTTGCCTGATCAGTGGACTCCTCAGATAATTGTCCAAAGTGGGTCGCAATCTGAACATTTTGAAGAAAATTCCCAAGCTCAATCTGAAGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

1811

Amino Acids

199.82

Weight (kDa)

5.73

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	33 - 102	1.5e-17	FYVE zinc finger
Cpn60_TCP1	PF00118	414 - 666	1.1e-30	TCP-1/cpn60 chaperonin family
PIP5K	PF01504	1553 - 1719	1.9e-34	Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K	PF01504	1718 - 1774	8.7e-08	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240
fragaria_vesca	FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530
malus_domestica	MD02G1103900.v1.1 MD15G1224300.v1.1
prunus_persica	Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1
pyrus_communis	pycom02g08170 pycom15g19930 pycom15g19940
rosa_chinensis	RchiOBHm_Chr2g0096101
rosa_laevigata	RLG00000016625
rosa_multiflora	Rmu_sc0005996.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145750
rosa_rugosa	Rorug02G0057000 Rorug02G0057100 Rorug02G0057200 Rorug02G0057200
rosa_samantha	Rh2AG104000 Rh2BG106100 Rh2CG108000 Rh2DG106700
rosa_wichuraiana	Rw2G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4965
AarI	CACCTGC	1 cut(s)	1192
Acc36I	ACCTGC	2 cut(s)	1192, 1221
AccB1I	GGYRCC	3 cut(s)	5, 4190, 4652
AccB7I	CCANNNNNTGG	2 cut(s)	248, 2105
AccI	GTMKAC	1 cut(s)	4547
AccII	CGCG	2 cut(s)	468, 4568
AccIII	TCCGGA	1 cut(s)	3679
AciI	CCGC	8 cut(s)	175, 959, 3148, 3260, 3914, 4636, 4980, 5062
AclI	AACGTT	2 cut(s)	4674, 5302
AclWI	GGATC	9 cut(s)	1319, 1332, 1456, 2120, 2617, 3818, 4816, 4954, 5183
AcoI	YGGCCR	3 cut(s)	184, 526, 3457
AcsI	RAATTY	6 cut(s)	20, 1781, 3029, 3200, 4387, 5404
AcuI	CTGAAG	6 cut(s)	1568, 1907, 2039, 2349, 3557, 3626
AdeI	CACNNNGTG	2 cut(s)	824, 2681
AflIII	ACRYGT	5 cut(s)	1764, 1924, 2246, 2675, 4566
AgeI	ACCGGT	1 cut(s)	922
AhdI	GACNNNNNGTC	1 cut(s)	4919
AhlI	ACTAGT	2 cut(s)	4085, 4256
AjnI	CCWGG	9 cut(s)	349, 1244, 1327, 2083, 2323, 2902, 4193, 4656, 4824
AjuI	GAANNNNNNNTTGG	2 cut(s)	5263, 5295
Alw21I	GWGCWC	2 cut(s)	1140, 1183
AlwI	GGATC	9 cut(s)	1319, 1332, 1456, 2120, 2617, 3818, 4816, 4954, 5183
AlwNI	CAGNNNCTG	4 cut(s)	524, 2105, 4409, 5011
Ama87I	CYCGRG	2 cut(s)	87, 968
Aor13HI	TCCGGA	1 cut(s)	3679
AoxI	GGCC	8 cut(s)	184, 332, 352, 526, 2709, 3457, 4526, 5232
ApaI	GGGCCC	3 cut(s)	336, 2713, 4530
ApoI	RAATTY	6 cut(s)	20, 1781, 3029, 3200, 4387, 5404
ArsI	GACNNNNNNTTYG	4 cut(s)	1490, 1522, 2765, 2797
AsiGI	ACCGGT	1 cut(s)	922
Asp700I	GAANNNNTTC	3 cut(s)	2625, 3225, 5303
AspLEI	GCGC	3 cut(s)	468, 2830, 3537
AsuC2I	CCSGG	5 cut(s)	88, 89, 1615, 3257, 4169
AsuII	TTCGAA	1 cut(s)	2722
AsuNHI	GCTAGC	1 cut(s)	5164
AvaI	CYCGRG	2 cut(s)	87, 968
AvaII	GGWCC	8 cut(s)	455, 1540, 2067, 2227, 2958, 3529, 5002, 5252
AxyI	CCTNAGG	1 cut(s)	5236
BaeGI	GKGCMC	7 cut(s)	8, 336, 474, 1711, 2713, 4530, 4657
BalI	TGGCCA	2 cut(s)	528, 3459
BamHI	GGATCC	1 cut(s)	1324
BanI	GGYRCC	3 cut(s)	5, 4190, 4652
BanII	GRGCYC	6 cut(s)	336, 1183, 2713, 3861, 4254, 4530
BauI	CACGAG	1 cut(s)	5159
BbsI	GAAGAC	3 cut(s)	3101, 3173, 3414
Bbv12I	GWGCWC	2 cut(s)	1140, 1183
BceAI	ACGGC	3 cut(s)	2527, 4196, 4943
BcgI	CGANNNNNNTGC	2 cut(s)	3782, 3816
BciT130I	CCWGG	9 cut(s)	351, 1246, 1329, 2085, 2325, 2904, 4195, 4658, 4826
BciVI	GTATCC	3 cut(s)	1621, 4486, 4519
BclI	TGATCA	2 cut(s)	2785, 5344
BcnI	CCSGG	5 cut(s)	88, 89, 1615, 3257, 4169
BcuI	ACTAGT	2 cut(s)	4085, 4256
BfmI	CTRYAG	9 cut(s)	115, 372, 475, 1056, 2141, 2187, 2286, 3321, 4417
BfoI	RGCGCY	1 cut(s)	3538
BfuAI	ACCTGC	2 cut(s)	1192, 1221
BfuI	GTATCC	3 cut(s)	1621, 4486, 4519
BglI	GCCNNNNNGGC	2 cut(s)	183, 4010
BlpI	GCTNAGC	1 cut(s)	4813
BmcAI	AGTACT	1 cut(s)	4795
Bme18I	GGWCC	8 cut(s)	455, 1540, 2067, 2227, 2958, 3529, 5002, 5252
BmeRI	GACNNNNNGTC	1 cut(s)	4919
BmeT110I	CYCGRG	2 cut(s)	87, 968
BmrI	ACTGGG	4 cut(s)	136, 1713, 1760, 4567
BmtI	GCTAGC	1 cut(s)	5168
BmuI	ACTGGG	4 cut(s)	136, 1713, 1760, 4567
BoxI	GACNNNNGTC	1 cut(s)	4143
BpiI	GAAGAC	3 cut(s)	3101, 3173, 3414
BplI	GAGNNNNNCTC	4 cut(s)	1676, 1708, 2938, 2970
BpmI	CTGGAG	1 cut(s)	2958
Bpu1102I	GCTNAGC	1 cut(s)	4813
Bpu14I	TTCGAA	1 cut(s)	2722
BpuEI	CTTGAG	5 cut(s)	863, 1608, 2038, 2965, 3500
BpuMI	CCSGG	5 cut(s)	88, 89, 1615, 3257, 4169
BsaI	GGTCTC	7 cut(s)	1235, 1666, 1964, 2766, 2885, 3788, 4632
BsaWI	WCCGGW	3 cut(s)	922, 2224, 3679
BsaXI	ACNNNNNCTCC	4 cut(s)	547, 577, 939, 969
Bse118I	RCCGGY	1 cut(s)	922
Bse21I	CCTNAGG	1 cut(s)	5236
Bse3DI	GCAATG	6 cut(s)	169, 305, 582, 2521, 4924, 5028
BseAI	TCCGGA	1 cut(s)	3679
BseBI	CCWGG	9 cut(s)	351, 1246, 1329, 2085, 2325, 2904, 4195, 4658, 4826
BseMI	GCAATG	6 cut(s)	169, 305, 582, 2521, 4924, 5028
BseRI	GAGGAG	6 cut(s)	568, 734, 1148, 1485, 2615, 5346
BseSI	GKGCMC	7 cut(s)	8, 336, 474, 1711, 2713, 4530, 4657
BseYI	CCCAGC	2 cut(s)	1805, 5286
BsgI	GTGCAG	2 cut(s)	388, 3080
Bsh1236I	CGCG	2 cut(s)	468, 4568
Bsh1285I	CGRYCG	1 cut(s)	5112
BshFI	GGCC	8 cut(s)	186, 334, 354, 528, 2711, 3459, 4528, 5234
BshNI	GGYRCC	3 cut(s)	5, 4190, 4652
BshTI	ACCGGT	1 cut(s)	922
BsiEI	CGRYCG	1 cut(s)	5112
BsiHKAI	GWGCWC	2 cut(s)	1140, 1183
BsiHKCI	CYCGRG	2 cut(s)	87, 968
BsiSI	CCGG	7 cut(s)	88, 923, 1615, 2225, 3256, 3680, 4168
BslFI	GGGAC	7 cut(s)	70, 104, 1703, 2213, 3542, 4555, 5219
BsmBI	CGTCTC	3 cut(s)	552, 4865, 5037
BsmFI	GGGAC	7 cut(s)	70, 104, 1703, 2213, 3542, 4555, 5219
BsmI	GAATGC	3 cut(s)	754, 5096, 5241
BsnI	GGCC	8 cut(s)	186, 334, 354, 528, 2711, 3459, 4528, 5234
Bso31I	GGTCTC	7 cut(s)	1235, 1666, 1964, 2766, 2885, 3788, 4632
BsoBI	CYCGRG	2 cut(s)	87, 968
Bsp119I	TTCGAA	1 cut(s)	2722
Bsp120I	GGGCCC	3 cut(s)	332, 2709, 4526
Bsp13I	TCCGGA	1 cut(s)	3679
Bsp1407I	TGTACA	3 cut(s)	206, 1930, 3847
Bsp1720I	GCTNAGC	1 cut(s)	4813
Bsp19I	CCATGG	1 cut(s)	3969
BspACI	CCGC	8 cut(s)	175, 959, 3148, 3260, 3914, 4636, 4980, 5062
BspANI	GGCC	8 cut(s)	186, 334, 354, 528, 2711, 3459, 4528, 5234
BspEI	TCCGGA	1 cut(s)	3679
BspFNI	CGCG	2 cut(s)	468, 4568
BspHI	TCATGA	3 cut(s)	862, 3241, 5187
BspMAI	CTGCAG	2 cut(s)	2145, 3325
BspMI	ACCTGC	2 cut(s)	1192, 1221
BspOI	GCTAGC	1 cut(s)	5168
BspPI	GGATC	9 cut(s)	1319, 1332, 1456, 2120, 2617, 3818, 4816, 4954, 5183
BspQI	GCTCTTC	1 cut(s)	3297
BspT104I	TTCGAA	1 cut(s)	2722
BspT107I	GGYRCC	3 cut(s)	5, 4190, 4652
BspTNI	GGTCTC	7 cut(s)	1235, 1666, 1964, 2766, 2885, 3788, 4632
BsrDI	GCAATG	6 cut(s)	169, 305, 582, 2521, 4924, 5028
BsrFI	RCCGGY	1 cut(s)	922
BsrGI	TGTACA	3 cut(s)	206, 1930, 3847
BssAI	RCCGGY	1 cut(s)	922
BssNAI	GTATAC	1 cut(s)	4548
BssSI	CACGAG	1 cut(s)	5159
BssT1I	CCWWGG	6 cut(s)	59, 1465, 3709, 3969, 4033, 4692
Bst1107I	GTATAC	1 cut(s)	4548
Bst2BI	CACGAG	1 cut(s)	5159
Bst2UI	CCWGG	9 cut(s)	351, 1246, 1329, 2085, 2325, 2904, 4195, 4658, 4826
Bst6I	CTCTTC	4 cut(s)	2616, 3297, 3515, 3681
BstAPI	GCANNNNNTGC	2 cut(s)	4076, 5102
BstAUI	TGTACA	3 cut(s)	206, 1930, 3847
BstBI	TTCGAA	1 cut(s)	2722
BstDSI	CCRYGG	1 cut(s)	3969
BstEII	GGTNACC	2 cut(s)	2792, 4136
BstENI	CCTNNNNNAGG	1 cut(s)	4535
BstFNI	CGCG	2 cut(s)	468, 4568
BstH2I	RGCGCY	1 cut(s)	3538
BstHHI	GCGC	3 cut(s)	468, 2830, 3537
BstMCI	CGRYCG	1 cut(s)	5112
BstNI	CCWGG	9 cut(s)	351, 1246, 1329, 2085, 2325, 2904, 4195, 4658, 4826
BstNSI	RCATGY	5 cut(s)	1768, 1928, 2250, 4502, 4599
BstPAI	GACNNNNGTC	1 cut(s)	4143
BstPI	GGTNACC	2 cut(s)	2792, 4136
BstSFI	CTRYAG	9 cut(s)	115, 372, 475, 1056, 2141, 2187, 2286, 3321, 4417
BstSLI	GKGCMC	7 cut(s)	8, 336, 474, 1711, 2713, 4530, 4657
BstUI	CGCG	2 cut(s)	468, 4568
BstV2I	GAAGAC	3 cut(s)	3101, 3173, 3414
BstX2I	RGATCY	4 cut(s)	1324, 2609, 4821, 4946
BstYI	RGATCY	4 cut(s)	1324, 2609, 4821, 4946
BstZ17I	GTATAC	1 cut(s)	4548
Bsu36I	CCTNAGG	1 cut(s)	5236
BsuI	GTATCC	3 cut(s)	1621, 4486, 4519
BsuRI	GGCC	8 cut(s)	186, 334, 354, 528, 2711, 3459, 4528, 5234
BtgI	CCRYGG	1 cut(s)	3969
BtgZI	GCGATG	2 cut(s)	348, 1163
BtsI	GCAGTG	1 cut(s)	1807
BtsIMutI	CAGTG	8 cut(s)	426, 1096, 1701, 1807, 2968, 4382, 4557, 5354
BveI	ACCTGC	2 cut(s)	1192, 1221
CaiI	CAGNNNCTG	4 cut(s)	524, 2105, 4409, 5011
CciI	TCATGA	3 cut(s)	862, 3241, 5187
CfoI	GCGC	3 cut(s)	468, 2830, 3537
Cfr10I	RCCGGY	1 cut(s)	922
Cfr9I	CCCGGG	1 cut(s)	87
CseI	GACGC	3 cut(s)	1580, 4557, 4923
CsiI	ACCWGGT	2 cut(s)	1244, 2083
CspAI	ACCGGT	1 cut(s)	922
CspCI	CAANNNNNGTGG	4 cut(s)	1440, 1475, 5025, 5060
DraI	TTTAAA	1 cut(s)	2205
DraIII	CACNNNGTG	2 cut(s)	824, 2681
DriI	GACNNNNNGTC	1 cut(s)	4919
EaeI	YGGCCR	3 cut(s)	184, 526, 3457
Eam1104I	CTCTTC	4 cut(s)	2616, 3297, 3515, 3681
Eam1105I	GACNNNNNGTC	1 cut(s)	4919
EarI	CTCTTC	4 cut(s)	2616, 3297, 3515, 3681
EciI	GGCGGA	1 cut(s)	3275
Ecl136II	GAGCTC	1 cut(s)	1181
Eco130I	CCWWGG	6 cut(s)	59, 1465, 3709, 3969, 4033, 4692
Eco147I	AGGCCT	1 cut(s)	5234
Eco24I	GRGCYC	6 cut(s)	336, 1183, 2713, 3861, 4254, 4530
Eco31I	GGTCTC	7 cut(s)	1235, 1666, 1964, 2766, 2885, 3788, 4632
Eco32I	GATATC	1 cut(s)	1073
Eco47I	GGWCC	8 cut(s)	455, 1540, 2067, 2227, 2958, 3529, 5002, 5252
Eco53kI	GAGCTC	1 cut(s)	1181
Eco57I	CTGAAG	6 cut(s)	1568, 1907, 2039, 2349, 3557, 3626
Eco81I	CCTNAGG	1 cut(s)	5236
Eco88I	CYCGRG	2 cut(s)	87, 968
Eco91I	GGTNACC	2 cut(s)	2792, 4136
EcoICRI	GAGCTC	1 cut(s)	1181
EcoNI	CCTNNNNNAGG	1 cut(s)	4535
EcoO109I	RGGNCCY	3 cut(s)	333, 4526, 4527
EcoO65I	GGTNACC	2 cut(s)	2792, 4136
EcoRI	GAATTC	1 cut(s)	4387
EcoRII	CCWGG	9 cut(s)	349, 1244, 1327, 2083, 2323, 2902, 4193, 4656, 4824
EcoRV	GATATC	1 cut(s)	1073
EcoT14I	CCWWGG	6 cut(s)	59, 1465, 3709, 3969, 4033, 4692
EcoT22I	ATGCAT	1 cut(s)	1355
EcoT38I	GRGCYC	6 cut(s)	336, 1183, 2713, 3861, 4254, 4530
ErhI	CCWWGG	6 cut(s)	59, 1465, 3709, 3969, 4033, 4692
Esp3I	CGTCTC	3 cut(s)	552, 4865, 5037
FaqI	GGGAC	7 cut(s)	70, 104, 1703, 2213, 3542, 4555, 5219
FauI	CCCGC	2 cut(s)	966, 4973
FauNDI	CATATG	1 cut(s)	895
FbaI	TGATCA	2 cut(s)	2785, 5344
FblI	GTMKAC	1 cut(s)	4547
FriOI	GRGCYC	6 cut(s)	336, 1183, 2713, 3861, 4254, 4530
GlaI	GCGC	3 cut(s)	467, 2829, 3536
GsaI	CCCAGC	2 cut(s)	1809, 5290
GsuI	CTGGAG	1 cut(s)	2958
HaeII	RGCGCY	1 cut(s)	3538
HaeIII	GGCC	8 cut(s)	186, 334, 354, 528, 2711, 3459, 4528, 5234
HapII	CCGG	7 cut(s)	88, 923, 1615, 2225, 3256, 3680, 4168
HgaI	GACGC	3 cut(s)	1580, 4557, 4923
HhaI	GCGC	3 cut(s)	468, 2830, 3537
Hin6I	GCGC	3 cut(s)	466, 2828, 3535
HinP1I	GCGC	3 cut(s)	466, 2828, 3535
HincII	GTYRAC	3 cut(s)	37, 4030, 4845
HindII	GTYRAC	3 cut(s)	37, 4030, 4845
HindIII	AAGCTT	2 cut(s)	379, 2740
HpaII	CCGG	7 cut(s)	88, 923, 1615, 2225, 3256, 3680, 4168
Hpy99I	CGWCG	1 cut(s)	4247
HpyCH4IV	ACGT	9 cut(s)	545, 1262, 1453, 1696, 2677, 4674, 4960, 5030, 5302
HpySE526I	ACGT	9 cut(s)	545, 1262, 1453, 1696, 2677, 4674, 4960, 5030, 5302
HspAI	GCGC	3 cut(s)	466, 2828, 3535
Kpn2I	TCCGGA	1 cut(s)	3679
Ksp22I	TGATCA	2 cut(s)	2785, 5344
LguI	GCTCTTC	1 cut(s)	3297
MabI	ACCWGGT	2 cut(s)	1244, 2083
MaeII	ACGT	9 cut(s)	545, 1262, 1453, 1696, 2677, 4674, 4960, 5030, 5302
MfeI	CAATTG	2 cut(s)	1128, 3468
MflI	RGATCY	4 cut(s)	1324, 2609, 4821, 4946
MlsI	TGGCCA	2 cut(s)	528, 3459
MluI	ACGCGT	1 cut(s)	4566
MluNI	TGGCCA	2 cut(s)	528, 3459
MlyI	GAGTC	4 cut(s)	1828, 3842, 4153, 5347
MmeI	TCCRAC	3 cut(s)	1230, 5119, 5294
Mox20I	TGGCCA	2 cut(s)	528, 3459
Mph1103I	ATGCAT	1 cut(s)	1355
MroI	TCCGGA	1 cut(s)	3679
MroXI	GAANNNNTTC	3 cut(s)	2625, 3225, 5303
MscI	TGGCCA	2 cut(s)	528, 3459
MslI	CAYNNNNRTG	8 cut(s)	690, 759, 867, 1584, 1800, 2502, 3519, 4451
Msp20I	TGGCCA	2 cut(s)	528, 3459
MspA1I	CMGCKG	5 cut(s)	2105, 3062, 3320, 3884, 4638
MspI	CCGG	7 cut(s)	88, 923, 1615, 2225, 3256, 3680, 4168
MunI	CAATTG	2 cut(s)	1128, 3468
Mva1269I	GAATGC	3 cut(s)	754, 5096, 5241
MvaI	CCWGG	9 cut(s)	351, 1246, 1329, 2085, 2325, 2904, 4195, 4658, 4826
MvnI	CGCG	2 cut(s)	468, 4568
NciI	CCSGG	5 cut(s)	88, 89, 1615, 3257, 4169
NcoI	CCATGG	1 cut(s)	3969
NdeI	CATATG	1 cut(s)	895
NheI	GCTAGC	1 cut(s)	5164
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	7 cut(s)	1760, 4081, 4136, 4156, 4455, 4552, 4720
NsiI	ATGCAT	1 cut(s)	1355
NspI	RCATGY	5 cut(s)	1768, 1928, 2250, 4502, 4599
NspV	TTCGAA	1 cut(s)	2722
PagI	TCATGA	3 cut(s)	862, 3241, 5187
PaqCI	CACCTGC	1 cut(s)	1192
PasI	CCCWGGG	1 cut(s)	4657
PceI	AGGCCT	1 cut(s)	5234
PciI	ACATGT	3 cut(s)	1764, 1924, 2246
PciSI	GCTCTTC	1 cut(s)	3297
PctI	GAATGC	3 cut(s)	754, 5096, 5241
PdmI	GAANNNNTTC	3 cut(s)	2625, 3225, 5303
PflMI	CCANNNNNTGG	2 cut(s)	248, 2105
PfoI	TCCNGGA	1 cut(s)	4167
PinAI	ACCGGT	1 cut(s)	922
PleI	GAGTC	4 cut(s)	1828, 3841, 4152, 5347
PpsI	GAGTC	4 cut(s)	1828, 3841, 4152, 5347
PscI	ACATGT	3 cut(s)	1764, 1924, 2246
PshAI	GACNNNNGTC	1 cut(s)	4143
PsiI	TTATAA	1 cut(s)	4965
Psp124BI	GAGCTC	1 cut(s)	1183
Psp1406I	AACGTT	2 cut(s)	4674, 5302
Psp6I	CCWGG	9 cut(s)	349, 1244, 1327, 2083, 2323, 2902, 4193, 4656, 4824
PspEI	GGTNACC	2 cut(s)	2792, 4136
PspFI	CCCAGC	2 cut(s)	1805, 5286
PspGI	CCWGG	9 cut(s)	349, 1244, 1327, 2083, 2323, 2902, 4193, 4656, 4824
PspOMI	GGGCCC	3 cut(s)	332, 2709, 4526
PstI	CTGCAG	2 cut(s)	2145, 3325
PstNI	CAGNNNCTG	4 cut(s)	524, 2105, 4409, 5011
PsuI	RGATCY	4 cut(s)	1324, 2609, 4821, 4946
PvuII	CAGCTG	4 cut(s)	2105, 3062, 3320, 3884
RseI	CAYNNNNRTG	8 cut(s)	690, 759, 867, 1584, 1800, 2502, 3519, 4451
SacI	GAGCTC	1 cut(s)	1183
SapI	GCTCTTC	1 cut(s)	3297
ScaI	AGTACT	1 cut(s)	4795
SchI	GAGTC	4 cut(s)	1828, 3842, 4153, 5347
SexAI	ACCWGGT	2 cut(s)	1244, 2083
SfcI	CTRYAG	9 cut(s)	115, 372, 475, 1056, 2141, 2187, 2286, 3321, 4417
SfuI	TTCGAA	1 cut(s)	2722
SinI	GGWCC	8 cut(s)	455, 1540, 2067, 2227, 2958, 3529, 5002, 5252
SmaI	CCCGGG	1 cut(s)	89
SmiMI	CAYNNNNRTG	8 cut(s)	690, 759, 867, 1584, 1800, 2502, 3519, 4451
SmlI	CTYRAG	5 cut(s)	842, 1623, 2053, 2944, 3479
SmoI	CTYRAG	5 cut(s)	842, 1623, 2053, 2944, 3479
SpeI	ACTAGT	2 cut(s)	4085, 4256
SseBI	AGGCCT	1 cut(s)	5234
SsiI	CCGC	8 cut(s)	175, 959, 3148, 3260, 3914, 4636, 4980, 5062
SspI	AATATT	1 cut(s)	1666
SstI	GAGCTC	1 cut(s)	1183
StuI	AGGCCT	1 cut(s)	5234
StyI	CCWWGG	6 cut(s)	59, 1465, 3709, 3969, 4033, 4692
TaiI	ACGT	9 cut(s)	548, 1265, 1456, 1699, 2680, 4677, 4963, 5033, 5305
TaqI	TCGA	8 cut(s)	449, 2061, 2211, 2279, 2722, 4242, 4954, 5112
TaqII	GACCGA	3 cut(s)	4614, 5098, 5269
TatI	WGTACW	5 cut(s)	206, 1930, 3668, 3847, 4793
TauI	GCSGC	4 cut(s)	177, 3917, 4638, 5065
TscAI	CASTG	8 cut(s)	433, 1096, 1708, 1807, 2968, 4389, 4557, 5354
TseFI	GTSAC	7 cut(s)	1760, 4081, 4136, 4156, 4455, 4552, 4720
Tsp45I	GTSAC	7 cut(s)	1760, 4081, 4136, 4156, 4455, 4552, 4720
TspGWI	ACGGA	4 cut(s)	2448, 3511, 3641, 4480
TspMI	CCCGGG	1 cut(s)	87
TspRI	CASTG	8 cut(s)	433, 1096, 1708, 1807, 2968, 4389, 4557, 5354
Van91I	CCANNNNNTGG	2 cut(s)	248, 2105
VpaK11BI	GGWCC	8 cut(s)	455, 1540, 2067, 2227, 2958, 3529, 5002, 5252
XagI	CCTNNNNNAGG	1 cut(s)	4535
XapI	RAATTY	6 cut(s)	20, 1781, 3029, 3200, 4387, 5404
XceI	RCATGY	5 cut(s)	1768, 1928, 2250, 4502, 4599
XmaI	CCCGGG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	4547
XmnI	GAANNNNTTC	3 cut(s)	2625, 3225, 5303
ZrmI	AGTACT	1 cut(s)	4795
Zsp2I	ATGCAT	1 cut(s)	1355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.