Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005996.1

Orthogroup ID

OG0002065

Physical Location & Seq

Genomic Coordinates Forward (+)

33839 .. 42109

Gene Structure 8271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005996.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5454 bp

atgggcacccctgacaacaaattgtcagagatagttgacattttcaagtcttggatgcccaggagaaccgagccaaccaatgtgtccagggacttttggatgcccgatcacagctgtagggtatgctacgactgtgattcccagttcacagtatttaatcgaaggcatcattgccgcctttgtggccgagttttctgcgctaggtgtactgcaaacactattcctgccccatctgatgagccaagaattggtagggaagacggggagaggattagggtctgtaatttttgcttcaagcaatgggagcaagggatagcagcagttgataatgggccccctgaacctagccctggcctcagtccatcaccatctacaacaagcttggtcagtaccaacacaagctgcacctaccacagtagcagcagcactgttggttctaccccttattcgactggaccttaccagcacgtgccctatagttctggtcttagccccagacaatcttgccaagatgattcagttactggcctgcaagacaatgtaacatctcagaggagcattagttctgacgctgccatggcagagtcgtctcccaaccagtttggcttttgcatggacaggagtgatgatgaggatgatgactatggttatcattcagattcagaatcaagacatttcacccatgccaatgactattatggtgcaatcaataacgaggagtttgatagtgtgtatgaaccacagaaggtgcattctgatggagaaaccacagatgcaaaatgtttgagctccttttcacctgagaagtttgatacacagagtgtagtgggaacgaaacttggggaagaatcagattatcatattaattgtgatgaatgtgaaacttctccatatgagatggagactacaaatgcagaaccggtggattttgagaataatgggctactttggctcccaccagaacctgaggatgaagaagatgacagagaagctgccttatttgaggatgatgatgatgatgagggtggtgatggtggtggtggtggtggtggtggtgctacaggggagtggggatatcttcattcttcaaacagttttggtggtggggagtgtcgtactagggagaagtcaattgaggagcacaggaaggccatgaagaatgtggtggaaggtcattttagagctctggtatctcagctcttgcaggttgaaaacctgccttcgattgatgaaaattacaaagagacttggttggacataattacgtctttgtcatgggaagctgccacacttcttaagccagatacgagcaaagggggaggaatggatcctgggggatatgtgaaggttaaatgcatagcttgtgggagtcggagcgagagcatggtggttaaaggagttgtttgcaagaaaaacgtggctcatcggcgaatgacttcaaagatagaaaaaccacgtttcttgatccttggaggagctttggaatatcagcgtgtatcaaaccacttgtccagtttcgatactttgttgcagcaggagatggaccatctgaagatggcagttgctaagatcgatgcacatcaccctaatgttttattggtggagaagtctgtatctcggtatgctcaagattaccttcttgcgaaagacatatcactcgttctgaatattaagaggccacttttggagcgaatatctcgctgcactggggcacaaattgtcccttcgatagatcatcttacatcaccaaaactagggtattgcgacatgttccatgtggagaaattttttgaagtgcatggcagtgctggacaaggtgggaagaaattaacaaagactctgatgttctttgaaggttgtccaaagccattgggtgttactatattgctgaagggtgccaatggggatgagttaaaaaaggtgaaacatgttgtgcagtatggagtttttgcagcttatcacttggctttggagacctcatttttagctgatgaaggagcttcccttccagaacttcctctgaagtctgtggtaactgtattgcctgataaaccgtcgagtattgacaggtccatttccaccatacctggttttagtgtaccagcagctggcaagcctcagagttccaatgctagcagtgaactgcagaactcaaataaaggcctcatttcagatagtggctcatttgcccaagttgcctccattttaaagaacgaaggcaccaatttggtctgcttacctaaagctccgtgttctcaaccttcccccataaaacataccccgagtcctatagaatatacatcttctttcacttccttgtctccccgaggacaggatacgacagactcctgccataaagagctttcttcaatttgtggctctgaggacaacaaggatgtaagttctaaagaatcttgtccagccaaaacagccaaggcaggcgaagctttagttcacgatagtttgatctctaattcttttagcacctcagaggcatttggacatggtggtggaattggcaatgctgatggcgttgctttagctgcaaatctcagagagactccagagcttccatccataaaatatcatactgataatcagaatgaggaggtgggatcttcaaaagaagagtttcccccctcaccttcagaccaccagagcattttggtttccctatcaacacgttgtgtgtggaaaggaactgtatgtgaacgagcccatctttttcgaatcaaatactatggaagctttgataagcctctggggaggtttttacgagaccatctttttgatcagggttacctctgtcgttcatgtgggatgccctcagaagcgcatattcattgttatactcatagacaaggaagccttacaatatctgttaagaaactcccagagattttcctgccaggggaaaaggaaggaaaaatatggatgtggcataggtgcttgagatgtcctcggaccagtggcttccctccagccactcgtagagttgtaatgtcagatgctgcttggggtttatcttttgggaaatttctggaattaagcttttcaaatcatgcagctgcaaacagagttgcaagctgtggtcattccctgcacagagattgtcttcggttttatgggtttgggagaatggttgcttgcttccgctatgcctcaattcatattcactctgtttgtctgcccccaccaaaacttgaattttactatgataatcaggaatggatacaaaaagaagcatacgaggtgggcaaccgggcggagcttctatttactgaattacatagtgctcttcatcagattttacagaagataaaagttgtggagacacaggatggtggtaagaaagcacctgaatcgactcatcaaattgtagaacttgaagggatgcttcaaaaggaaagggaagactctgagaaatcattacaaaaagtgataaagggggaggtgaaatctggccagcctgcaattgatattcttgagatcaataaattgcggaggcagttactcttccattcttatgtttgggaccagcgcctgattcgtgcagcgagtctaagcaataataaatttcaggaaggtttaaccagttccgttaccaaactcaaggagaaacctattggcatggagaaggttgtcaaaacaccaggaagaaatttcagtagttgtacagctcttcccgaaatcaagcctggtataaatcttaatcaaggaggagatgctggctactttagccagatgggaggggttcagaacagaactgaaatgggtctggacacagatcatgggaatgagacctctgcaaatgtccttgataaatctgatcctttggagtctgaaaaaattgtacaaatgggtctctcggaagagaatgaatgttcggctgtggaaagtttatctgatacccttgatgcggcttggactggtacaacccacccaactagtacaacatctagagagaatggctattcacttcctcatccaaccttggtaaaatcatcaactgtggtaaaaaatgttgcatccgctgtggaaaatggtactgttgaccaaggtggggtgcaggcaactcgttctcttatttctacatttcctgctgtcactagttcattcagtaaaagtgcttcctttaacactcaaaagctatgtattggtggtgagcacagtcctgtctatgttgcacggttccgggaactggaacggcatactggtgcgaggttgctactgccaattggtgttaatgatacagttatccctgtttttgatgatgagcccactagtgttattgcatataccctcgtctctcctaattatcatttgcagatttctgagcctgatagaccaattgattctgcagtctcattaccgctttttgattcagcgaatcttctctcactgaatgcttttgatgagtcagtttctgagacctacagaggtcttagttcttctgatgagagcatcttatccatgtcacattcgcggagctctgaatctcttgtgtcaaaggatatacatgctagagtatcctttacagatgaggggcccctcggtaaggtgaagtatacagtgacttgttactacgcatcgcagtttgaggcattaaggaaggcatgttgcccttccgaattagattttgtgcggtctcttagccgctgtaagaagtggggtgcccagggtggaaagagcaacgttttctttgctaagaccttggatgatcggtttatcatcaaacaagtcacaaagaccgagctggagtcatttatcaagtttgcaccagcttatttcaaatatttgtctcattcaatcagtactagaagcccaacttgcctagcaaagatcctgggtatctatcaggtttcatcaaaacatggtaaagcagggaaagagacaaagatggatgtcttagtaatggagaatctattatttagacggaatgtctcacggctttatgacctgaaaggatcttctcgatcacgttataatccagacacaagtggaagcaataaagtgctactggaccagaatctgattgaagcaatgcctacttctccaatttttttggggaacagggcaaagcggctattggagagagctgtctggaatgatactgcattccttgcttcaatcgatgtgatggactactcgttactggttggagtggatgaggaaaagcacgagctagttttggggatcattgatttcatgaggcaatatacatgggacaagcaccttgaaacttgggtgaaggcctcaggcatcctcggaggaccgaagaatacatctccaaccgtgatttcaccccagcagtataagaaacgtttcaggaaagctatggccacttactttctgatgcttcccgatcagtggtcgcctgaggcgattgtcccaagtgggtcgcaatctgaccattttgaagaaacttcccaagctcaatctgaagccttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

1817

Amino Acids

200.54

Weight (kDa)

5.87

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240
fragaria_vesca	FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530
malus_domestica	MD02G1103900.v1.1 MD15G1224300.v1.1
prunus_persica	Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1
pyrus_communis	pycom02g08170 pycom15g19930 pycom15g19940
rosa_chinensis	RchiOBHm_Chr2g0096101
rosa_laevigata	RLG00000016625
rosa_multiflora	Rmu_sc0005996.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145750
rosa_rugosa	Rorug02G0057000 Rorug02G0057100 Rorug02G0057200 Rorug02G0057200
rosa_samantha	Rh2AG104000 Rh2BG106100 Rh2CG108000 Rh2DG106700
rosa_wichuraiana	Rw2G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4986
Acc36I	ACCTGC	2 cut(s)	1195, 1224
AccB1I	GGYRCC	4 cut(s)	5, 1895, 2219, 4673
AccB7I	CCANNNNNTGG	2 cut(s)	248, 2108
AccI	GTMKAC	1 cut(s)	4568
AccII	CGCG	1 cut(s)	4486
AclI	AACGTT	2 cut(s)	4695, 5323
AclWI	GGATC	8 cut(s)	1322, 1335, 1459, 2623, 3824, 4837, 4975, 5204
AcoI	YGGCCR	3 cut(s)	184, 3463, 5340
AcsI	RAATTY	5 cut(s)	1784, 3035, 3206, 3575, 3661
AcuI	CTGAAG	4 cut(s)	1571, 1910, 2042, 2631
AcvI	CACGTG	1 cut(s)	469
AdeI	CACNNNGTG	2 cut(s)	821, 2687
AflII	CTTAAG	1 cut(s)	1295
AflIII	ACRYGT	3 cut(s)	1767, 1927, 2681
AgeI	ACCGGT	1 cut(s)	919
AhdI	GACNNNNNGTC	1 cut(s)	4940
AhlI	ACTAGT	3 cut(s)	3947, 4109, 4283
AjuI	GAANNNNNNNTTGG	2 cut(s)	5284, 5316
AloI	GAACNNNNNNTCC	2 cut(s)	547, 579
Alw21I	GWGCWC	6 cut(s)	791, 1143, 1186, 3298, 4170, 4493
AlwI	GGATC	8 cut(s)	1322, 1335, 1459, 2623, 3824, 4837, 4975, 5204
AlwNI	CAGNNNCTG	7 cut(s)	524, 965, 2108, 3011, 3544, 4427, 5032
Ama87I	CYCGRG	2 cut(s)	2281, 2325
ApaI	GGGCCC	2 cut(s)	336, 4551
ApoI	RAATTY	5 cut(s)	1784, 3035, 3206, 3575, 3661
ArsI	GACNNNNNNTTYG	4 cut(s)	1493, 1525, 2771, 2803
AseI	ATTAAT	1 cut(s)	864
AsiGI	ACCGGT	1 cut(s)	919
Asp700I	GAANNNNTTC	3 cut(s)	1435, 2631, 5324
AspLEI	GCGC	3 cut(s)	200, 2836, 3543
AsuC2I	CCSGG	2 cut(s)	3263, 4196
AsuII	TTCGAA	1 cut(s)	2728
AsuNHI	GCTAGC	1 cut(s)	2132
AvaI	CYCGRG	2 cut(s)	2281, 2325
AvaII	GGWCC	7 cut(s)	455, 1543, 2070, 2964, 3535, 5023, 5273
AxyI	CCTNAGG	3 cut(s)	966, 5257, 5379
BaeGI	GKGCMC	6 cut(s)	8, 336, 474, 1714, 4551, 4678
BalI	TGGCCA	2 cut(s)	3465, 5342
BamHI	GGATCC	1 cut(s)	1327
BanI	GGYRCC	4 cut(s)	5, 1895, 2219, 4673
BanII	GRGCYC	7 cut(s)	336, 791, 1186, 2719, 4281, 4493, 4551
BarI	GAAGNNNNNNTAC	2 cut(s)	4114, 4146
BauI	CACGAG	1 cut(s)	5180
BbrPI	CACGTG	1 cut(s)	469
BbsI	GAAGAC	3 cut(s)	264, 3107, 3420
Bbv12I	GWGCWC	6 cut(s)	791, 1143, 1186, 3298, 4170, 4493
BceAI	ACGGC	2 cut(s)	4223, 4964
BcgI	CGANNNNNNTGC	6 cut(s)	177, 211, 3345, 3379, 4058, 4092
BciVI	GTATCC	3 cut(s)	2329, 3225, 4540
BclI	TGATCA	1 cut(s)	2791
BcnI	CCSGG	2 cut(s)	3263, 4196
BcuI	ACTAGT	3 cut(s)	3947, 4109, 4283
BfmI	CTRYAG	7 cut(s)	115, 475, 1059, 2144, 2289, 4359, 4435
BfoI	RGCGCY	1 cut(s)	3544
BfrI	CTTAAG	1 cut(s)	1295
BfuAI	ACCTGC	2 cut(s)	1195, 1224
BfuI	GTATCC	3 cut(s)	2329, 3225, 4540
BglI	GCCNNNNNGGC	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	4816
Bme18I	GGWCC	7 cut(s)	455, 1543, 2070, 2964, 3535, 5023, 5273
BmeRI	GACNNNNNGTC	1 cut(s)	4940
BmeT110I	CYCGRG	2 cut(s)	2281, 2325
BmrI	ACTGGG	2 cut(s)	136, 1716
BmtI	GCTAGC	1 cut(s)	2136
BmuI	ACTGGG	2 cut(s)	136, 1716
BpiI	GAAGAC	3 cut(s)	264, 3107, 3420
BplI	GAGNNNNNCTC	2 cut(s)	2944, 2976
BpmI	CTGGAG	3 cut(s)	2547, 2964, 4778
Bpu14I	TTCGAA	1 cut(s)	2728
BpuEI	CTTGAG	4 cut(s)	1611, 2971, 3506, 3596
BpuMI	CCSGG	2 cut(s)	3263, 4196
Bsa29I	ATCGAT	2 cut(s)	1572, 5133
BsaAI	YACGTR	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	1578
BsaI	GGTCTC	6 cut(s)	1967, 2772, 3794, 3869, 4424, 4653
BsaWI	WCCGGW	1 cut(s)	919
BsaXI	ACNNNNNCTCC	4 cut(s)	547, 577, 936, 966
Bse118I	RCCGGY	1 cut(s)	919
Bse21I	CCTNAGG	3 cut(s)	966, 5257, 5379
Bse3DI	GCAATG	4 cut(s)	169, 305, 2527, 5049
Bse8I	GATNNNNATC	1 cut(s)	1578
BseCI	ATCGAT	2 cut(s)	1572, 5133
BseJI	GATNNNNATC	1 cut(s)	1578
BseMI	GCAATG	4 cut(s)	169, 305, 2527, 5049
BseRI	GAGGAG	6 cut(s)	568, 731, 1151, 1488, 2621, 3735
BseSI	GKGCMC	6 cut(s)	8, 336, 474, 1714, 4551, 4678
BseYI	CCCAGC	1 cut(s)	5307
BsgI	GTGCAG	6 cut(s)	388, 1687, 1955, 3086, 3573, 4088
Bsh1236I	CGCG	1 cut(s)	4486
BshNI	GGYRCC	4 cut(s)	5, 1895, 2219, 4673
BshTI	ACCGGT	1 cut(s)	919
BshVI	ATCGAT	2 cut(s)	1572, 5133
BsiHKAI	GWGCWC	6 cut(s)	791, 1143, 1186, 3298, 4170, 4493
BsiHKCI	CYCGRG	2 cut(s)	2281, 2325
BsiSI	CCGG	3 cut(s)	920, 3262, 4195
BslFI	GGGAC	5 cut(s)	104, 1706, 3548, 5240, 5375
BsmBI	CGTCTC	2 cut(s)	594, 4312
BsmFI	GGGAC	5 cut(s)	104, 1706, 3548, 5240, 5375
BsmI	GAATGC	3 cut(s)	751, 4411, 5117
Bso31I	GGTCTC	6 cut(s)	1967, 2772, 3794, 3869, 4424, 4653
BsoBI	CYCGRG	2 cut(s)	2281, 2325
Bsp119I	TTCGAA	1 cut(s)	2728
Bsp120I	GGGCCC	2 cut(s)	332, 4547
Bsp1407I	TGTACA	2 cut(s)	3674, 3853
Bsp19I	CCATGG	1 cut(s)	576
BspDI	ATCGAT	2 cut(s)	1572, 5133
BspFNI	CGCG	1 cut(s)	4486
BspHI	TCATGA	1 cut(s)	5208
BspMAI	CTGCAG	2 cut(s)	2148, 4363
BspMI	ACCTGC	2 cut(s)	1195, 1224
BspOI	GCTAGC	1 cut(s)	2136
BspPI	GGATC	8 cut(s)	1322, 1335, 1459, 2623, 3824, 4837, 4975, 5204
BspQI	GCTCTTC	2 cut(s)	3303, 3687
BspT104I	TTCGAA	1 cut(s)	2728
BspT107I	GGYRCC	4 cut(s)	5, 1895, 2219, 4673
BspTI	CTTAAG	1 cut(s)	1295
BspTNI	GGTCTC	6 cut(s)	1967, 2772, 3794, 3869, 4424, 4653
BsrDI	GCAATG	4 cut(s)	169, 305, 2527, 5049
BsrFI	RCCGGY	1 cut(s)	919
BsrGI	TGTACA	2 cut(s)	3674, 3853
BssAI	RCCGGY	1 cut(s)	919
BssNAI	GTATAC	1 cut(s)	4569
BssSI	CACGAG	1 cut(s)	5180
BssT1I	CCWWGG	6 cut(s)	576, 1468, 2433, 3993, 4057, 4713
Bst1107I	GTATAC	1 cut(s)	4569
Bst2BI	CACGAG	1 cut(s)	5180
Bst6I	CTCTTC	5 cut(s)	2622, 3303, 3521, 3687, 3867
BstAFI	CTTAAG	1 cut(s)	1295
BstAPI	GCANNNNNTGC	1 cut(s)	5123
BstAUI	TGTACA	2 cut(s)	3674, 3853
BstBAI	YACGTR	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	2728
BstDSI	CCRYGG	1 cut(s)	576
BstEII	GGTNACC	1 cut(s)	2798
BstENI	CCTNNNNNAGG	1 cut(s)	4556
BstFNI	CGCG	1 cut(s)	4486
BstH2I	RGCGCY	1 cut(s)	3544
BstHHI	GCGC	3 cut(s)	200, 2836, 3543
BstNSI	RCATGY	4 cut(s)	1771, 1931, 4523, 4620
BstPI	GGTNACC	1 cut(s)	2798
BstSFI	CTRYAG	7 cut(s)	115, 475, 1059, 2144, 2289, 4359, 4435
BstSLI	GKGCMC	6 cut(s)	8, 336, 474, 1714, 4551, 4678
BstUI	CGCG	1 cut(s)	4486
BstV2I	GAAGAC	3 cut(s)	264, 3107, 3420
BstX2I	RGATCY	4 cut(s)	1327, 2615, 4842, 4967
BstYI	RGATCY	4 cut(s)	1327, 2615, 4842, 4967
BstZ17I	GTATAC	1 cut(s)	4569
Bsu15I	ATCGAT	2 cut(s)	1572, 5133
Bsu36I	CCTNAGG	3 cut(s)	966, 5257, 5379
BsuI	GTATCC	3 cut(s)	2329, 3225, 4540
BsuTUI	ATCGAT	2 cut(s)	1572, 5133
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	4575
BtsI	GCAGTG	2 cut(s)	1810, 2143
BtsIMutI	CAGTG	8 cut(s)	426, 1704, 1810, 2143, 2974, 4400, 4578, 5375
BveI	ACCTGC	2 cut(s)	1195, 1224
CaiI	CAGNNNCTG	7 cut(s)	524, 965, 2108, 3011, 3544, 4427, 5032
CciI	TCATGA	1 cut(s)	5208
CfoI	GCGC	3 cut(s)	200, 2836, 3543
Cfr10I	RCCGGY	1 cut(s)	919
ClaI	ATCGAT	2 cut(s)	1572, 5133
CseI	GACGC	1 cut(s)	578
CsiI	ACCWGGT	1 cut(s)	2086
CspAI	ACCGGT	1 cut(s)	919
CspCI	CAANNNNNGTGG	2 cut(s)	1443, 1478
DraI	TTTAAA	1 cut(s)	2208
DraIII	CACNNNGTG	2 cut(s)	821, 2687
DriI	GACNNNNNGTC	1 cut(s)	4940
EaeI	YGGCCR	3 cut(s)	184, 3463, 5340
Eam1104I	CTCTTC	5 cut(s)	2622, 3303, 3521, 3687, 3867
Eam1105I	GACNNNNNGTC	1 cut(s)	4940
EarI	CTCTTC	5 cut(s)	2622, 3303, 3521, 3687, 3867
EciI	GGCGGA	1 cut(s)	3281
Ecl136II	GAGCTC	3 cut(s)	789, 1184, 4491
Eco130I	CCWWGG	6 cut(s)	576, 1468, 2433, 3993, 4057, 4713
Eco147I	AGGCCT	2 cut(s)	2163, 5255
Eco24I	GRGCYC	7 cut(s)	336, 791, 1186, 2719, 4281, 4493, 4551
Eco31I	GGTCTC	6 cut(s)	1967, 2772, 3794, 3869, 4424, 4653
Eco32I	GATATC	1 cut(s)	1076
Eco47I	GGWCC	7 cut(s)	455, 1543, 2070, 2964, 3535, 5023, 5273
Eco53kI	GAGCTC	3 cut(s)	789, 1184, 4491
Eco57I	CTGAAG	4 cut(s)	1571, 1910, 2042, 2631
Eco72I	CACGTG	1 cut(s)	469
Eco81I	CCTNAGG	3 cut(s)	966, 5257, 5379
Eco88I	CYCGRG	2 cut(s)	2281, 2325
Eco91I	GGTNACC	1 cut(s)	2798
EcoICRI	GAGCTC	3 cut(s)	789, 1184, 4491
EcoNI	CCTNNNNNAGG	1 cut(s)	4556
EcoO109I	RGGNCCY	3 cut(s)	333, 4547, 4548
EcoO65I	GGTNACC	1 cut(s)	2798
EcoRV	GATATC	1 cut(s)	1076
EcoT14I	CCWWGG	6 cut(s)	576, 1468, 2433, 3993, 4057, 4713
EcoT22I	ATGCAT	1 cut(s)	1358
EcoT38I	GRGCYC	7 cut(s)	336, 791, 1186, 2719, 4281, 4493, 4551
ErhI	CCWWGG	6 cut(s)	576, 1468, 2433, 3993, 4057, 4713
Esp3I	CGTCTC	2 cut(s)	594, 4312
FalI	AAGNNNNNCTT	8 cut(s)	1620, 1652, 2853, 2885, 3381, 3413, 4813, 4845
FaqI	GGGAC	5 cut(s)	104, 1706, 3548, 5240, 5375
FauNDI	CATATG	1 cut(s)	892
FbaI	TGATCA	1 cut(s)	2791
FblI	GTMKAC	1 cut(s)	4568
FriOI	GRGCYC	7 cut(s)	336, 791, 1186, 2719, 4281, 4493, 4551
GlaI	GCGC	3 cut(s)	199, 2835, 3542
GsaI	CCCAGC	1 cut(s)	5311
GsuI	CTGGAG	3 cut(s)	2547, 2964, 4778
HaeII	RGCGCY	1 cut(s)	3544
HapII	CCGG	3 cut(s)	920, 3262, 4195
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	3 cut(s)	200, 2836, 3543
Hin6I	GCGC	3 cut(s)	198, 2834, 3541
HinP1I	GCGC	3 cut(s)	198, 2834, 3541
HincII	GTYRAC	2 cut(s)	37, 4054
HindII	GTYRAC	2 cut(s)	37, 4054
HindIII	AAGCTT	4 cut(s)	379, 2445, 2746, 3049
HpaII	CCGG	3 cut(s)	920, 3262, 4195
Hpy166II	GTNNAC	9 cut(s)	37, 147, 207, 2099, 2141, 2455, 2711, 4054, 4569
Hpy8I	GTNNAC	9 cut(s)	37, 147, 207, 2099, 2141, 2455, 2711, 4054, 4569
Hpy99I	CGWCG	1 cut(s)	2059
HpyCH4IV	ACGT	8 cut(s)	468, 1265, 1416, 1456, 2683, 4695, 4981, 5323
HpySE526I	ACGT	8 cut(s)	468, 1265, 1416, 1456, 2683, 4695, 4981, 5323
HspAI	GCGC	3 cut(s)	198, 2834, 3541
Ksp22I	TGATCA	1 cut(s)	2791
LguI	GCTCTTC	2 cut(s)	3303, 3687
MabI	ACCWGGT	1 cut(s)	2086
MaeII	ACGT	8 cut(s)	468, 1265, 1416, 1456, 2683, 4695, 4981, 5323
MfeI	CAATTG	4 cut(s)	1131, 3474, 4236, 4350
MflI	RGATCY	4 cut(s)	1327, 2615, 4842, 4967
MlsI	TGGCCA	2 cut(s)	3465, 5342
MluNI	TGGCCA	2 cut(s)	3465, 5342
MmeI	TCCRAC	5 cut(s)	1233, 1352, 4013, 5140, 5315
Mox20I	TGGCCA	2 cut(s)	3465, 5342
Mph1103I	ATGCAT	1 cut(s)	1358
MroXI	GAANNNNTTC	3 cut(s)	1435, 2631, 5324
MscI	TGGCCA	2 cut(s)	3465, 5342
MslI	CAYNNNNRTG	8 cut(s)	687, 756, 1587, 1803, 2508, 3525, 3795, 4215
Msp20I	TGGCCA	2 cut(s)	3465, 5342
MspA1I	CMGCKG	5 cut(s)	114, 2108, 3068, 4034, 4659
MspCI	CTTAAG	1 cut(s)	1295
MspI	CCGG	3 cut(s)	920, 3262, 4195
MunI	CAATTG	4 cut(s)	1131, 3474, 4236, 4350
Mva1269I	GAATGC	3 cut(s)	751, 4411, 5117
MvnI	CGCG	1 cut(s)	4486
NciI	CCSGG	2 cut(s)	3263, 4196
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	892
NheI	GCTAGC	1 cut(s)	2132
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	4 cut(s)	4105, 4476, 4573, 4741
NsiI	ATGCAT	1 cut(s)	1358
NspI	RCATGY	4 cut(s)	1771, 1931, 4523, 4620
NspV	TTCGAA	1 cut(s)	2728
PagI	TCATGA	1 cut(s)	5208
PasI	CCCWGGG	1 cut(s)	4678
PceI	AGGCCT	2 cut(s)	2163, 5255
PciI	ACATGT	2 cut(s)	1767, 1927
PciSI	GCTCTTC	2 cut(s)	3303, 3687
PcsI	WCGNNNNNNNCGW	1 cut(s)	5381
PctI	GAATGC	3 cut(s)	751, 4411, 5117
PdmI	GAANNNNTTC	3 cut(s)	1435, 2631, 5324
PflMI	CCANNNNNTGG	2 cut(s)	248, 2108
PfoI	TCCNGGA	1 cut(s)	4194
PinAI	ACCGGT	1 cut(s)	919
PmaCI	CACGTG	1 cut(s)	469
PmlI	CACGTG	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	469
PscI	ACATGT	2 cut(s)	1767, 1927
PshBI	ATTAAT	1 cut(s)	864
PsiI	TTATAA	1 cut(s)	4986
Psp124BI	GAGCTC	3 cut(s)	791, 1186, 4493
Psp1406I	AACGTT	2 cut(s)	4695, 5323
PspCI	CACGTG	1 cut(s)	469
PspEI	GGTNACC	1 cut(s)	2798
PspFI	CCCAGC	1 cut(s)	5307
PspOMI	GGGCCC	2 cut(s)	332, 4547
PstI	CTGCAG	2 cut(s)	2148, 4363
PstNI	CAGNNNCTG	7 cut(s)	524, 965, 2108, 3011, 3544, 4427, 5032
PsuI	RGATCY	4 cut(s)	1327, 2615, 4842, 4967
PvuII	CAGCTG	3 cut(s)	114, 2108, 3068
RseI	CAYNNNNRTG	8 cut(s)	687, 756, 1587, 1803, 2508, 3525, 3795, 4215
SacI	GAGCTC	3 cut(s)	791, 1186, 4493
SapI	GCTCTTC	2 cut(s)	3303, 3687
ScaI	AGTACT	1 cut(s)	4816
SexAI	ACCWGGT	1 cut(s)	2086
SfcI	CTRYAG	7 cut(s)	115, 475, 1059, 2144, 2289, 4359, 4435
SfuI	TTCGAA	1 cut(s)	2728
SinI	GGWCC	7 cut(s)	455, 1543, 2070, 2964, 3535, 5023, 5273
SmiMI	CAYNNNNRTG	8 cut(s)	687, 756, 1587, 1803, 2508, 3525, 3795, 4215
SmlI	CTYRAG	5 cut(s)	1295, 1626, 2950, 3485, 3611
SmoI	CTYRAG	5 cut(s)	1295, 1626, 2950, 3485, 3611
SpeI	ACTAGT	3 cut(s)	3947, 4109, 4283
SseBI	AGGCCT	2 cut(s)	2163, 5255
SspI	AATATT	2 cut(s)	1669, 4796
SstI	GAGCTC	3 cut(s)	791, 1186, 4493
StuI	AGGCCT	2 cut(s)	2163, 5255
StyI	CCWWGG	6 cut(s)	576, 1468, 2433, 3993, 4057, 4713
TaiI	ACGT	8 cut(s)	471, 1268, 1419, 1459, 2686, 4698, 4984, 5326
TaqII	GACCGA	2 cut(s)	4766, 5290
TatI	WGTACW	5 cut(s)	206, 3674, 3853, 3950, 4814
TauI	GCSGC	4 cut(s)	177, 3923, 4659, 5086
TscAI	CASTG	8 cut(s)	433, 1711, 1810, 2143, 2974, 4407, 4578, 5375
TseFI	GTSAC	4 cut(s)	4105, 4476, 4573, 4741
Tsp45I	GTSAC	4 cut(s)	4105, 4476, 4573, 4741
TspGWI	ACGGA	3 cut(s)	2238, 3589, 4951
TspRI	CASTG	8 cut(s)	433, 1711, 1810, 2143, 2974, 4407, 4578, 5375
Van91I	CCANNNNNTGG	2 cut(s)	248, 2108
Vha464I	CTTAAG	1 cut(s)	1295
VpaK11BI	GGWCC	7 cut(s)	455, 1543, 2070, 2964, 3535, 5023, 5273
VspI	ATTAAT	1 cut(s)	864
XagI	CCTNNNNNAGG	1 cut(s)	4556
XapI	RAATTY	5 cut(s)	1784, 3035, 3206, 3575, 3661
XbaI	TCTAGA	1 cut(s)	3959
XceI	RCATGY	4 cut(s)	1771, 1931, 4523, 4620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1159
XmiI	GTMKAC	1 cut(s)	4568
XmnI	GAANNNNTTC	3 cut(s)	1435, 2631, 5324
ZrmI	AGTACT	1 cut(s)	4816
Zsp2I	ATGCAT	1 cut(s)	1358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.