Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002065

Physical Location & Seq

Genomic Coordinates Forward (+)

4414143 .. 4417521

Gene Structure 3379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCCGGCCACTATGTTATGGTGGACGGCGGCTCCATGCCTAATGGGGTCCGATCCCATTCTTCCGTCATTCCTCTTCTCTCTATCGCTGGGGTAAGAAAAAGAAGGTCGATTTTCGAAGGAAGGTTTGGGTTGAGGAAGCTTTCAATAGAAGAAGAGGCACTTGCTATGGCACTTGCTCAGCACCTGGTTGTGAATGCCAGCTGCAAAGACGGAAAGAGCTTTTACTACAGCAGTAGCATAAACATCGCCGTTGCTGTGGCTATTGATGGTGGGCTGATAACCCCCTGTTCTTCAGGATGCAGACAAGTTGGATTTGTATTTGTTATCTCAGAAGTGGAAAGAGCTGGTGGAGAAGGCTCGCTCAAGCAACTTCAGCCCCATGGGTACAACTCAGGAACTTTCACTCTGTCCAATTTGGGCATGCTTGGAGTGGACAGATTCGATGCTATTCTTCCTCCGGGCCAGGGTGCTATCAGGGCTGTTGGAGCTTCAAAACCCACTGTTGTAGCTGATGCAGACGGATTCTTCAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

179

Amino Acids

18.72

Weight (kDa)

8.51

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	53 - 174	8.8e-26	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240
fragaria_vesca	FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530
malus_domestica	MD02G1103900.v1.1 MD15G1224300.v1.1
prunus_persica	Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1
pyrus_communis	pycom02g08170 pycom15g19930 pycom15g19940
rosa_chinensis	RchiOBHm_Chr2g0096101
rosa_laevigata	RLG00000016625
rosa_multiflora	Rmu_sc0005996.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145750
rosa_rugosa	Rorug02G0057000 Rorug02G0057100 Rorug02G0057200 Rorug02G0057200
rosa_samantha	Rh2AG104000 Rh2BG106100 Rh2CG108000 Rh2DG106700
rosa_wichuraiana	Rw2G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	2 cut(s)	3, 7
AcuI	CTGAAG	3 cut(s)	279, 359, 514
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	147, 495
AjnI	CCWGG	2 cut(s)	186, 465
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	6 cut(s)	142, 204, 222, 347, 491, 512
AluI	AGCT	6 cut(s)	142, 204, 222, 347, 491, 512
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	3, 7, 463
ApeKI	GCWGC	1 cut(s)	204
AspS9I	GGNCC	2 cut(s)	49, 463
AsuC2I	CCSGG	1 cut(s)	462
AsuII	TTCGAA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	2 cut(s)	43, 236
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	2 cut(s)	188, 467
BcnI	CCSGG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	229
BisI	GCNGC	2 cut(s)	31, 205
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	32, 206
Bme1390I	CCNGG	3 cut(s)	188, 462, 467
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	49, 463
BmiI	GGNNCC	2 cut(s)	34, 50
BmrFI	CCNGG	3 cut(s)	188, 462, 467
BmsI	GCATC	3 cut(s)	290, 436, 505
Bpu1102I	GCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	382, 466
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse118I	RCCGGY	1 cut(s)	5
BseBI	CCWGG	2 cut(s)	188, 467
BseDI	CCNNGG	2 cut(s)	382, 466
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	3 cut(s)	194, 345, 408
BseXI	GCAGC	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	3 cut(s)	5, 9, 465
BsiSI	CCGG	2 cut(s)	6, 461
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	5, 9, 465
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	53
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	3 cut(s)	5, 9, 465
BspCNI	CTCAG	3 cut(s)	193, 344, 407
BspLI	GGNNCC	2 cut(s)	34, 50
BspPI	GGATC	1 cut(s)	48
BspT104I	TTCGAA	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	382, 466
BssMI	GATC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	188, 467
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	2 cut(s)	81, 150
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	7, 202, 362, 425
BstDEI	CTNAG	3 cut(s)	180, 331, 394
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	305
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 479, 488
BstNI	CCWGG	2 cut(s)	188, 467
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	186, 460, 465
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	5, 9, 465
BtgI	CCRYGG	1 cut(s)	382
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	501, 538
Cac8I	GCNNGC	4 cut(s)	7, 202, 362, 425
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	49, 463
CsiI	ACCWGGT	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	3 cut(s)	37, 383, 424
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	3 cut(s)	180, 331, 394
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
EaeI	YGGCCR	2 cut(s)	3, 7
Eam1104I	CTCTTC	2 cut(s)	81, 150
EarI	CTCTTC	2 cut(s)	81, 150
Eco130I	CCWWGG	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	3 cut(s)	279, 359, 514
EcoRII	CCWGG	2 cut(s)	186, 465
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	3 cut(s)	40, 386, 427
FaiI	YATR	8 cut(s)	15, 20, 38, 170, 242, 384, 425, 538
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	3 cut(s)	36, 382, 423
Fnu4HI	GCNGC	2 cut(s)	31, 205
FokI	GGATG	1 cut(s)	312
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	31, 205
GluI	GCNGC	2 cut(s)	31, 205
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	5, 9, 465
HapII	CCGG	2 cut(s)	6, 461
Hin1II	CATG	3 cut(s)	40, 386, 427
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	441, 525
HpaII	CCGG	2 cut(s)	6, 461
Hpy166II	GTNNAC	2 cut(s)	25, 436
Hpy188I	TCNGA	2 cut(s)	53, 334
Hpy188III	TCNNGA	2 cut(s)	297, 396
Hpy8I	GTNNAC	2 cut(s)	25, 436
HpyAV	CCTTC	4 cut(s)	99, 113, 117, 350
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	3 cut(s)	207, 303, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 479, 488
HpyF3I	CTNAG	3 cut(s)	180, 331, 394
Hsp92II	CATG	3 cut(s)	40, 386, 427
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	2 cut(s)	38, 488
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	3 cut(s)	290, 436, 505
MabI	ACCWGGT	1 cut(s)	186
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	7 cut(s)	54, 68, 164, 167, 285, 446, 520
MluCI	AATT	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	292, 466
MnlI	CCTC	4 cut(s)	84, 129, 151, 468
MroNI	GCCGGC	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	2 cut(s)	6, 461
MspR9I	CCNGG	3 cut(s)	188, 462, 467
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	188, 467
MwoI	GCNNNNNNNGC	3 cut(s)	376, 479, 488
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	53
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	40, 386, 427
NlaIV	GGNNCC	2 cut(s)	34, 50
NspI	RCATGY	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	427
PctI	GAATGC	1 cut(s)	202
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	441, 525
PkrI	GCNGC	2 cut(s)	32, 206
Psp6I	CCWGG	2 cut(s)	186, 465
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	186, 465
PspN4I	GGNNCC	2 cut(s)	34, 50
PspPI	GGNCC	2 cut(s)	49, 463
PstNI	CAGNNNCTG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	204
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SatI	GCNGC	2 cut(s)	31, 205
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	2 cut(s)	49, 463
ScrFI	CCNGG	3 cut(s)	188, 462, 467
SetI	ASST	9 cut(s)	110, 128, 144, 189, 206, 224, 349, 493, 514
SexAI	ACCWGGT	1 cut(s)	186
SfaNI	GCATC	3 cut(s)	290, 436, 505
SfcI	CTRYAG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SphI	GCATGC	1 cut(s)	427
Sse9I	AATT	1 cut(s)	415
SsiI	CCGC	1 cut(s)	30
StyD4I	CCNGG	3 cut(s)	186, 460, 465
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	3 cut(s)	110, 117, 444
TasI	AATT	1 cut(s)	415
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	441, 525
TscAI	CASTG	2 cut(s)	508, 538
TseI	GCWGC	1 cut(s)	204
TspGWI	ACGGA	3 cut(s)	55, 228, 537
TspRI	CASTG	2 cut(s)	508, 538
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.