Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002065

Physical Location & Seq

Genomic Coordinates Forward (+)

9462398 .. 9472314

Gene Structure 9917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5454 bp

ATGGGCACCCCTGACAACAAATTATCAGAGATAGTTGACATTTTCAAGTCTTGGATGCCCAGGAGAACCGAGCCAACCAATGTGTCCAGGGACTTTTGGATGCCCGATCACAGCTGTAGGGTATGCTACGACTGTGATTCCCAGTTCACAGTATTTAATCGAAGGCATCATTGCCGCCTTTGTGGCCGAGTTTTCTGCGCTAGGTGTACTGCAAACACTATTCCTGCCCCATCTGATGAGCCAAGAATTGGTAGGGAAGACGGGGAGAGGATTAGGGTCTGTAATTTTTGCTTCAAGCAATGGGAGCAAGGGATAGCAGCAGCTGATAATGGGCCCCCTGAACCTAGCCCTGGCCTCAGTCCATCGCCATCTACAACAAGCTTGGTCAGTACCAACACAAGCTGCACCTACCACAGTAGCAGCAGCACTGTTGGTTCTACCCCTTATTCGACTGGACCTTACCAGCACGTGCCCTATAGTTCTGGTCTTAGCCCCAGACAATCTTGCCAAGATGATTCAGTTACTGGCCTGCAAGACAATGTAACATCTCAGAGGAGCATTAGTTCTGACGCTGCCATGGCAGAGTCGTCTCCCAACCAGTTTGGCTTTTGCATGGACAGGAGTGATGATGAGGATGATGACTATGGTTATCATTCAGATTCAGAATCAAGACATTTCACCCATGCCAATGACTATTATGGTGCAATCAATAACGAGGAGTTTGATAGCGTGTATGAACCACAGAAGGTGCATTCTGATGGAGAAACCATAGACGCAAAAAGTTTGAGCTCCTTTTCACCTGAGAAGTTTGATACACAGAGTGTAGTGGGAACGAAACTTGGGGAAGAATCAGATTATCATATTAATTGTGATGAATGTGAAACTTCTCCATATGAGATGGAGACTACAAATGCAGAACCGGTGGATTTTGAGAATAATGGGCTACTTTGGCTCCCACCAGAACCTGAGGATGAAGAAGATGACAGAGAAGCTGCCTTATTTGAGGATGATGATGACGGTGAGGGTGGTGATGGTGGTGGTGGTGGTGCTACAGGGGAGTGGGGATATCTTCATTCTTCAAACAGTTTTGGTGGTGGGGAGTGTCGTACTAGGGAGAAGTCAATTGAGGAGCACAGGAAGGCCATGAAGAATGTGGTGGAAGGTCATTTTAGAGCTCTGGTATCTCAGCTCTTGCAGGTTGAAAACCTGCCTTCGATTGATGAAAATTACAAAGAGACTTGGTTGGACATAATTACGTCTTTGTCATGGGAAGCTGCCACACTTCTTAAGCCAGATACGAGCAAAGGGGGAGGAATGGATCCTGGGGGATATGTGAAGGTTAAATGCATAGCTTGTGGGAGTCGGAGCGAGAGCATGGTGGTTAAAGGAGTTGTTTGCAAGAAAAACGTGGCTCATCGGCGAATGACTTCAAAGATAGAAAAACCACGTTTCTTGATCCTTGGAGGAGCTTTGGAATATCAGCGTGTATCAAACCACTTGTCCAGTTTCGATACTTTGTTGCAGCAGGAGATGGACCATCTGAAGATGGCAGTTGCTAAGATCGATGCACATCACCCTAATGTTTTATTGGTGGAGAAGTCTGTATCTCGGTATGCTCAAGATTACCTTCTTGCGAAAGACATATCACTCGTTCTGAATATTAAGAGGCCACTTTTGGAGCGAATATCTCGCTGCACTGGGGCACAAATTGTCCCTTCGATAGATCATCTTACGTCACCAAAACTAGGGTATTGCGACATGTTCCATGTGGAGAAATTTTTTGAAGTGCATGGCAGTGCTGGACAAGGTGGGAAGAAATTAACAAAGACTCTGATGTTCTTTGAAGGTTGTCCAAAGCCATTGGGTGTTACTATATTGCTGAAGGGTGCCAATGGGGATGAGTTAAAAAAGGTGAAACATGTTGTGCAGTATGGAGTTTTTGCAGCTTATCACTTGGCTTTGGAGACCTCATTTTTAGCTGATGAAGGAGCTTCCCTTCCAGAACTTCCTCTGAAGTCTGTGGTAACTGTATTGCCTGATAAACCGTCGAGTATTGACAGGTCCATTTCCACCATACCTGGTTTTAGTGTACCAGCAGCTGGCAAGCCTCAGAGTTCCAATGCTAGCAGTGAACTGCAGAACTCAAATAAAGGCCTCATTTCAGATAGTGGCTCATTTGCACAAGTTGCCTCCATTTTAAAGAACGAAGGCACCAATTTGGTCTGCTTACCTAAAGCTCCGTGTTCTCAACCTTCCCCCATAAAACATACCCCGATTCCTATAGAATATACATCTTCTTTCACTTCCTTGTCTCCCCCAGGACAGGATACGACAGACTCCTGCCATAAAGAGCTTTCTTCAATTTGTGGCTCTGAGGACAACAAGGATGTAAGTTCTAAAGAATCTTGTCCAGCCAAAACAGCCAAGGCAGGCGAAGCTTTAGTTCACGATAGTTTGATCTCTAATTCTTTTAGCACCTCAGAGGCATTTGGACATGGTGGTGGAATTGGCAATGCTGATGGCGTTGCTTTAGCTGCAAATCTCAGAGAGACTCCAGAGCTTCCATCCATAAAATATCATACTGATAATCAGAATGAGGAGGTGGGATCTTCAAAAGAAGAGTTTCCCCCCTCACCTTCAGACCACCAGAGCATTTTGGTTTCCCTATCAACACGTTGTGTGTGGAAAGGAACTGTATGTGAACGAGCCCATCTTTTTCGAATCAAATACTATGGAAGCTTTGATAAGCCTCTGGGGAGGTTTTTACGAGACCATCTTTTTGATCAGGGTTACCTCTGTCGTTCATGTGGGATGCCCTCAGAAGCACATATTCATTGTTATACTCATAGACAAGGAAGCCTTACAATATCTGTTAAGAAACTCCCAGAGATTTTCCTGCCAGGGGAAAAGGAAGGAAAAATATCGATGTGGCATAGGTGCTTGAGATGTCCTCGGACCAGTGGCTTCCCTCCAGCCACTCGTAGAGTTGTAATGTCAGATGCTGCTTGGGGTTTATCTTTTGGGAAATTTCTGGAATTGAGCTTTTCAAATCATGCAGCTGCAAACAGAGTTGCAAGCTGTGGTCATTCCCTGCACAGAGATTGTCTTCGGTTTTATGGGTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCCTCAATTCATATTCACTCTGTTTGTCTGCCCCCACCAAAACTTGAATTTTACTATGATAATCAGGAATGGATACAAAAAGAAGCATACGAGGTGGGCAACCGGGCGGAGCTTCTATTTACTGAATTACATAGTGCTCTTCATCAGATTTTACAGAAGATAAAAGTTGCGGAGACACAGGATGGTGGTAAGAAAGCACCTGAATCGACTCATCAAATTGTAGAACTTGAAGGGATGCTTCAAAAGGAAAGGGAAGACTTTGAGAAATCATTACAAAAAGTGATAAAGGGGGAGGTGAAATCTGGCCAGCCTGCAATTGATATTCTTGAGATCAATAAATTGCGGAGGCAGTTAATCTTCCATTCTTATGTTTGGGACCAGCGCCTGATTCGTGCAGCCAGTCTAAGCAATAATAAATTTCAGGAAGGTTTAACCAGTTCCGTTACCAAACTCAAGGAGAAACCTATTGGCATGGAGAAGGTTGTCAAAACACCAGGAAGAAATTTCAGTAGTTGTACAGCTCTTCCCGAAATCAAGCCTGGTATAAATCTTAATCAAGGAGGAGATGCTGGCTACTTTAGCCAGATGGGAGGGGTTCAGAACAGAACTGAAATGGGTCTGGACACAGATCATGGGAATGAGACCTCTGCAAATGTCCTTGATAAATCTGATCCTTTGGAGTCTGAAAAAATTGTACAAATGGGTCTCTCGGAAGAGAATGAATGTTCGGCTGTGGAAAGTTTATCTGATACCCTTGATGCGGCTTGGACTGGTACAACGCACCCAACTAGTACAACATCTAGAGAGAATGGCTATTCACTTCCTCATCCAACCTTGGTAAAATCATCAACTGTGGTAAAAAATGTTGCATCCGCTGTGGAAAATGGTACTGTTGACCAAGGTGGGGTACAGGCAACTCGTTCTCTTATTTCTACACTTCCTGCTGTCACTAGTTCATTCAGTAAAAGTGCTTCCTTTAACACTCAAAAGCTATGTATTGGTGGTGAGCACAGTCCTGTCTATGTTGCACGGTTCCGGGAACTGGAACGGCATACTGGTGCCAGGTTGCTACTGCCGATTGGTGTTAATGATACAGTTATCCCTGTTTTTGATGATGAGCCCACTAGTGTTATTGCATATACCCTCGTCTCTCCTAATTATCATTTGCAGATTTCTGAGCCTGATAGACCAAAAGAAGCTATTGATTCTGCAGTCTCATTACCGCTTTTTGATTCAGTGAATCTTCTCTCACTGAATGCTTTTGATGAGTCAGTTTCTGAGACCTACAGAGGTCTTAGTTCTTCTGATGAGAGCATCTTATCCATGTCACATTCGCGGAGCTCTGAATCTCTTGTGTCAAAGGATATACATGCTAGAGTATCCTTTACAGATGAGGGGCCCCTCGGTAAGGTGAAGTATACAGTGACTTGTTACTACGCATCACAGTTTGAGGCATTAAGGAAGGCATGTTGCCCTTCCGAATTAGATTTTGTGCGGTCTCTTAGCCGCTGTAAGAAGTGGGGTGCCCAGGGTGGAAAGAGCAACGTTTTCTTTGCTAAAACCTTGGATGATCGGTTTATCATCAAACAAGTCACAAAGACGGAGCTGGAGTCATTTATCAAGTTTGCACCAGCTTATTTCAAATATTTGTCTGATTCAATCAGTACTAGAAGCCCAACTTGCTTAGCAAAGATCCTGGGTATCTATCAGGTTTCATCAAAGCATGGTAAAGCAGGGAAAGAGACAAAGATGGATGTCTTAGTAATGGAGAATCTATTATTTAGACGGAATGTCTCACGGCTCTATGACCTGAAAGGATCTTCTCGATCACGTTATAATCCAGACACAAGTGGAAGCAATAAAGTGCTACTGGACCAGAATCTGATTGAAGCAATGCCTACTTCTCCAATTTTTTTGGGGAACAGGGCAAAGCGGCTATTGGAGAGAGCTGTCTGGAATGATACTGCATTCCTTGCTTCAATCGATGTGATGGACTACTCATTACTGGTTGGAGTGGATGAGGAAAAGCACGAGCTAGTTTTGGGGATCATTGATTTCATGAGGCAATATACATGGGACAAGCACCTTGAAACTTGGGTGAAGGCCTCAGGCATCCTCGGAGGACCGAAGAATACATCTCCAACCGTGATTTCACCCCAGCAGTATAAGAAACGTTTCAGGAAAGCTATGGCCACTTACTTTCTGATGCTTCCCGATCAGTGGTCGCCTGAGGCGATTGTCCCAAGTGGGTCGCAATCTGACCATTTTGAAGAAACTTCCCAAGCTCAATCTGAAGCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

1817

Amino Acids

200.47

Weight (kDa)

5.84

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	33 - 102	3.5e-17	FYVE zinc finger
Cpn60_TCP1	PF00118	411 - 660	1.2e-30	TCP-1/cpn60 chaperonin family
PIP5K	PF01504	1560 - 1726	1.2e-34	Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K	PF01504	1725 - 1781	6.7e-08	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240
fragaria_vesca	FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530
malus_domestica	MD02G1103900.v1.1 MD15G1224300.v1.1
prunus_persica	Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1
pyrus_communis	pycom02g08170 pycom15g19930 pycom15g19940
rosa_chinensis	RchiOBHm_Chr2g0096101
rosa_laevigata	RLG00000016625
rosa_multiflora	Rmu_sc0005996.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145750
rosa_rugosa	Rorug02G0057000 Rorug02G0057100 Rorug02G0057200 Rorug02G0057200
rosa_samantha	Rh2AG104000 Rh2BG106100 Rh2CG108000 Rh2DG106700
rosa_wichuraiana	Rw2G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4986
Acc36I	ACCTGC	2 cut(s)	1186, 1215
AccB1I	GGYRCC	5 cut(s)	5, 1886, 2210, 4208, 4673
AccB7I	CCANNNNNTGG	2 cut(s)	248, 2099
AccI	GTMKAC	1 cut(s)	4568
AccII	CGCG	1 cut(s)	4486
AclI	AACGTT	2 cut(s)	4695, 5323
AclWI	GGATC	8 cut(s)	1313, 1326, 1450, 2614, 3815, 4837, 4975, 5204
AcoI	YGGCCR	3 cut(s)	184, 3454, 5340
AcsI	RAATTY	5 cut(s)	1775, 3026, 3197, 3566, 3652
AcuI	CTGAAG	4 cut(s)	1562, 1901, 2033, 2622
AcvI	CACGTG	1 cut(s)	469
AdeI	CACNNNGTG	2 cut(s)	821, 2678
AflII	CTTAAG	1 cut(s)	1286
AflIII	ACRYGT	3 cut(s)	1758, 1918, 2672
AgeI	ACCGGT	1 cut(s)	919
AhdI	GACNNNNNGTC	1 cut(s)	4940
AhlI	ACTAGT	3 cut(s)	3938, 4100, 4274
AjuI	GAANNNNNNNTTGG	2 cut(s)	5284, 5316
AloI	GAACNNNNNNTCC	2 cut(s)	547, 579
Alw21I	GWGCWC	6 cut(s)	791, 1134, 1177, 3289, 4161, 4493
AlwI	GGATC	8 cut(s)	1313, 1326, 1450, 2614, 3815, 4837, 4975, 5204
AlwNI	CAGNNNCTG	8 cut(s)	323, 524, 965, 2099, 3002, 3535, 4427, 5032
ApaI	GGGCCC	2 cut(s)	336, 4551
ApoI	RAATTY	5 cut(s)	1775, 3026, 3197, 3566, 3652
ArsI	GACNNNNNNTTYG	4 cut(s)	1484, 1516, 2762, 2794
AseI	ATTAAT	1 cut(s)	864
AsiGI	ACCGGT	1 cut(s)	919
Asp700I	GAANNNNTTC	3 cut(s)	1426, 2622, 5324
AspLEI	GCGC	2 cut(s)	200, 3534
AsuC2I	CCSGG	2 cut(s)	3254, 4187
AsuII	TTCGAA	1 cut(s)	2719
AsuNHI	GCTAGC	1 cut(s)	2123
AvaII	GGWCC	7 cut(s)	455, 1534, 2061, 2955, 3526, 5023, 5273
AxyI	CCTNAGG	3 cut(s)	966, 5257, 5379
BaeGI	GKGCMC	6 cut(s)	8, 336, 474, 1705, 4551, 4678
BalI	TGGCCA	2 cut(s)	3456, 5342
BamHI	GGATCC	1 cut(s)	1318
BanI	GGYRCC	5 cut(s)	5, 1886, 2210, 4208, 4673
BanII	GRGCYC	7 cut(s)	336, 791, 1177, 2710, 4272, 4493, 4551
BarI	GAAGNNNNNNTAC	2 cut(s)	4105, 4137
BauI	CACGAG	1 cut(s)	5180
BbrPI	CACGTG	1 cut(s)	469
BbsI	GAAGAC	3 cut(s)	264, 3098, 3411
Bbv12I	GWGCWC	6 cut(s)	791, 1134, 1177, 3289, 4161, 4493
BceAI	ACGGC	2 cut(s)	4214, 4964
BcgI	CGANNNNNNTGC	4 cut(s)	177, 211, 3336, 3370
BciVI	GTATCC	3 cut(s)	2320, 3216, 4540
BclI	TGATCA	1 cut(s)	2782
BcnI	CCSGG	2 cut(s)	3254, 4187
BcuI	ACTAGT	3 cut(s)	3938, 4100, 4274
BfmI	CTRYAG	7 cut(s)	115, 475, 1050, 2135, 2280, 4359, 4435
BfoI	RGCGCY	1 cut(s)	3535
BfrI	CTTAAG	1 cut(s)	1286
BfuAI	ACCTGC	2 cut(s)	1186, 1215
BfuI	GTATCC	3 cut(s)	2320, 3216, 4540
BglI	GCCNNNNNGGC	1 cut(s)	183
BlpI	GCTNAGC	1 cut(s)	4834
BmcAI	AGTACT	1 cut(s)	4816
Bme18I	GGWCC	7 cut(s)	455, 1534, 2061, 2955, 3526, 5023, 5273
BmeRI	GACNNNNNGTC	1 cut(s)	4940
BmrI	ACTGGG	2 cut(s)	136, 1707
BmtI	GCTAGC	1 cut(s)	2127
BmuI	ACTGGG	2 cut(s)	136, 1707
BpiI	GAAGAC	3 cut(s)	264, 3098, 3411
BplI	GAGNNNNNCTC	2 cut(s)	2935, 2967
BpmI	CTGGAG	3 cut(s)	2538, 2955, 4778
Bpu1102I	GCTNAGC	1 cut(s)	4834
Bpu14I	TTCGAA	1 cut(s)	2719
BpuEI	CTTGAG	4 cut(s)	1602, 2962, 3497, 3587
BpuMI	CCSGG	2 cut(s)	3254, 4187
Bsa29I	ATCGAT	3 cut(s)	1563, 2924, 5133
BsaAI	YACGTR	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	1569
BsaI	GGTCTC	6 cut(s)	1958, 2763, 3785, 3860, 4424, 4653
BsaWI	WCCGGW	1 cut(s)	919
BsaXI	ACNNNNNCTCC	6 cut(s)	547, 577, 936, 966, 4745, 4775
Bse118I	RCCGGY	1 cut(s)	919
Bse21I	CCTNAGG	3 cut(s)	966, 5257, 5379
Bse3DI	GCAATG	4 cut(s)	169, 305, 2518, 5049
Bse8I	GATNNNNATC	1 cut(s)	1569
BseCI	ATCGAT	3 cut(s)	1563, 2924, 5133
BseJI	GATNNNNATC	1 cut(s)	1569
BseMI	GCAATG	4 cut(s)	169, 305, 2518, 5049
BseRI	GAGGAG	6 cut(s)	568, 731, 1142, 1479, 2612, 3726
BseSI	GKGCMC	6 cut(s)	8, 336, 474, 1705, 4551, 4678
BseYI	CCCAGC	1 cut(s)	5307
BsgI	GTGCAG	5 cut(s)	388, 1678, 1946, 3077, 3564
Bsh1236I	CGCG	1 cut(s)	4486
BshNI	GGYRCC	5 cut(s)	5, 1886, 2210, 4208, 4673
BshTI	ACCGGT	1 cut(s)	919
BshVI	ATCGAT	3 cut(s)	1563, 2924, 5133
BsiHKAI	GWGCWC	6 cut(s)	791, 1134, 1177, 3289, 4161, 4493
BsiSI	CCGG	3 cut(s)	920, 3253, 4186
BslFI	GGGAC	5 cut(s)	104, 1697, 3539, 5240, 5375
BsmBI	CGTCTC	2 cut(s)	594, 4303
BsmFI	GGGAC	5 cut(s)	104, 1697, 3539, 5240, 5375
BsmI	GAATGC	3 cut(s)	751, 4411, 5117
Bso31I	GGTCTC	6 cut(s)	1958, 2763, 3785, 3860, 4424, 4653
Bsp119I	TTCGAA	1 cut(s)	2719
Bsp120I	GGGCCC	2 cut(s)	332, 4547
Bsp1407I	TGTACA	2 cut(s)	3665, 3844
Bsp1720I	GCTNAGC	1 cut(s)	4834
Bsp19I	CCATGG	1 cut(s)	576
BspDI	ATCGAT	3 cut(s)	1563, 2924, 5133
BspFNI	CGCG	1 cut(s)	4486
BspHI	TCATGA	1 cut(s)	5208
BspMAI	CTGCAG	2 cut(s)	2139, 4363
BspMI	ACCTGC	2 cut(s)	1186, 1215
BspOI	GCTAGC	1 cut(s)	2127
BspPI	GGATC	8 cut(s)	1313, 1326, 1450, 2614, 3815, 4837, 4975, 5204
BspQI	GCTCTTC	2 cut(s)	3294, 3678
BspT104I	TTCGAA	1 cut(s)	2719
BspT107I	GGYRCC	5 cut(s)	5, 1886, 2210, 4208, 4673
BspTI	CTTAAG	1 cut(s)	1286
BspTNI	GGTCTC	6 cut(s)	1958, 2763, 3785, 3860, 4424, 4653
BsrDI	GCAATG	4 cut(s)	169, 305, 2518, 5049
BsrFI	RCCGGY	1 cut(s)	919
BsrGI	TGTACA	2 cut(s)	3665, 3844
BssAI	RCCGGY	1 cut(s)	919
BssNAI	GTATAC	1 cut(s)	4569
BssSI	CACGAG	1 cut(s)	5180
BssT1I	CCWWGG	6 cut(s)	576, 1459, 2424, 3984, 4048, 4713
Bst1107I	GTATAC	1 cut(s)	4569
Bst2BI	CACGAG	1 cut(s)	5180
Bst6I	CTCTTC	4 cut(s)	2613, 3294, 3678, 3858
BstAFI	CTTAAG	1 cut(s)	1286
BstAPI	GCANNNNNTGC	2 cut(s)	2186, 5123
BstAUI	TGTACA	2 cut(s)	3665, 3844
BstBAI	YACGTR	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	2719
BstDSI	CCRYGG	1 cut(s)	576
BstEII	GGTNACC	1 cut(s)	2789
BstENI	CCTNNNNNAGG	1 cut(s)	4556
BstFNI	CGCG	1 cut(s)	4486
BstH2I	RGCGCY	1 cut(s)	3535
BstHHI	GCGC	2 cut(s)	200, 3534
BstNSI	RCATGY	4 cut(s)	1762, 1922, 4523, 4620
BstPI	GGTNACC	1 cut(s)	2789
BstSFI	CTRYAG	7 cut(s)	115, 475, 1050, 2135, 2280, 4359, 4435
BstSLI	GKGCMC	6 cut(s)	8, 336, 474, 1705, 4551, 4678
BstUI	CGCG	1 cut(s)	4486
BstV2I	GAAGAC	3 cut(s)	264, 3098, 3411
BstX2I	RGATCY	4 cut(s)	1318, 2606, 4842, 4967
BstYI	RGATCY	4 cut(s)	1318, 2606, 4842, 4967
BstZ17I	GTATAC	1 cut(s)	4569
Bsu15I	ATCGAT	3 cut(s)	1563, 2924, 5133
Bsu36I	CCTNAGG	3 cut(s)	966, 5257, 5379
BsuI	GTATCC	3 cut(s)	2320, 3216, 4540
BsuTUI	ATCGAT	3 cut(s)	1563, 2924, 5133
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	348
BtsI	GCAGTG	2 cut(s)	1801, 2134
BtsIMutI	CAGTG	9 cut(s)	426, 1695, 1801, 2134, 2965, 4392, 4400, 4578, 5375
BveI	ACCTGC	2 cut(s)	1186, 1215
CaiI	CAGNNNCTG	8 cut(s)	323, 524, 965, 2099, 3002, 3535, 4427, 5032
CciI	TCATGA	1 cut(s)	5208
CfoI	GCGC	2 cut(s)	200, 3534
Cfr10I	RCCGGY	1 cut(s)	919
ClaI	ATCGAT	3 cut(s)	1563, 2924, 5133
CseI	GACGC	2 cut(s)	578, 782
CsiI	ACCWGGT	1 cut(s)	2077
CspAI	ACCGGT	1 cut(s)	919
CspCI	CAANNNNNGTGG	2 cut(s)	1434, 1469
DraI	TTTAAA	1 cut(s)	2199
DraIII	CACNNNGTG	2 cut(s)	821, 2678
DriI	GACNNNNNGTC	1 cut(s)	4940
EaeI	YGGCCR	3 cut(s)	184, 3454, 5340
Eam1104I	CTCTTC	4 cut(s)	2613, 3294, 3678, 3858
Eam1105I	GACNNNNNGTC	1 cut(s)	4940
EarI	CTCTTC	4 cut(s)	2613, 3294, 3678, 3858
EciI	GGCGGA	1 cut(s)	3272
Ecl136II	GAGCTC	3 cut(s)	789, 1175, 4491
Eco130I	CCWWGG	6 cut(s)	576, 1459, 2424, 3984, 4048, 4713
Eco147I	AGGCCT	2 cut(s)	2154, 5255
Eco24I	GRGCYC	7 cut(s)	336, 791, 1177, 2710, 4272, 4493, 4551
Eco31I	GGTCTC	6 cut(s)	1958, 2763, 3785, 3860, 4424, 4653
Eco32I	GATATC	1 cut(s)	1067
Eco47I	GGWCC	7 cut(s)	455, 1534, 2061, 2955, 3526, 5023, 5273
Eco53kI	GAGCTC	3 cut(s)	789, 1175, 4491
Eco57I	CTGAAG	4 cut(s)	1562, 1901, 2033, 2622
Eco72I	CACGTG	1 cut(s)	469
Eco81I	CCTNAGG	3 cut(s)	966, 5257, 5379
Eco91I	GGTNACC	1 cut(s)	2789
EcoICRI	GAGCTC	3 cut(s)	789, 1175, 4491
EcoNI	CCTNNNNNAGG	1 cut(s)	4556
EcoO109I	RGGNCCY	3 cut(s)	333, 4547, 4548
EcoO65I	GGTNACC	1 cut(s)	2789
EcoRV	GATATC	1 cut(s)	1067
EcoT14I	CCWWGG	6 cut(s)	576, 1459, 2424, 3984, 4048, 4713
EcoT22I	ATGCAT	1 cut(s)	1349
EcoT38I	GRGCYC	7 cut(s)	336, 791, 1177, 2710, 4272, 4493, 4551
ErhI	CCWWGG	6 cut(s)	576, 1459, 2424, 3984, 4048, 4713
Esp3I	CGTCTC	2 cut(s)	594, 4303
FalI	AAGNNNNNCTT	8 cut(s)	1611, 1643, 2844, 2876, 3372, 3404, 4813, 4845
FaqI	GGGAC	5 cut(s)	104, 1697, 3539, 5240, 5375
FauNDI	CATATG	1 cut(s)	892
FbaI	TGATCA	1 cut(s)	2782
FblI	GTMKAC	1 cut(s)	4568
FriOI	GRGCYC	7 cut(s)	336, 791, 1177, 2710, 4272, 4493, 4551
GlaI	GCGC	2 cut(s)	199, 3533
GsaI	CCCAGC	1 cut(s)	5311
GsuI	CTGGAG	3 cut(s)	2538, 2955, 4778
HaeII	RGCGCY	1 cut(s)	3535
HapII	CCGG	3 cut(s)	920, 3253, 4186
HgaI	GACGC	2 cut(s)	578, 782
HhaI	GCGC	2 cut(s)	200, 3534
Hin6I	GCGC	2 cut(s)	198, 3532
HinP1I	GCGC	2 cut(s)	198, 3532
HincII	GTYRAC	2 cut(s)	37, 4045
HindII	GTYRAC	2 cut(s)	37, 4045
HindIII	AAGCTT	3 cut(s)	379, 2436, 2737
HpaII	CCGG	3 cut(s)	920, 3253, 4186
Hpy166II	GTNNAC	9 cut(s)	37, 147, 207, 2090, 2132, 2446, 2702, 4045, 4569
Hpy8I	GTNNAC	9 cut(s)	37, 147, 207, 2090, 2132, 2446, 2702, 4045, 4569
Hpy99I	CGWCG	1 cut(s)	2050
HpyCH4IV	ACGT	9 cut(s)	468, 1256, 1407, 1447, 1733, 2674, 4695, 4981, 5323
HpySE526I	ACGT	9 cut(s)	468, 1256, 1407, 1447, 1733, 2674, 4695, 4981, 5323
HspAI	GCGC	2 cut(s)	198, 3532
Ksp22I	TGATCA	1 cut(s)	2782
LguI	GCTCTTC	2 cut(s)	3294, 3678
MabI	ACCWGGT	1 cut(s)	2077
MaeII	ACGT	9 cut(s)	468, 1256, 1407, 1447, 1733, 2674, 4695, 4981, 5323
MfeI	CAATTG	2 cut(s)	1122, 3465
MflI	RGATCY	4 cut(s)	1318, 2606, 4842, 4967
MlsI	TGGCCA	2 cut(s)	3456, 5342
MluNI	TGGCCA	2 cut(s)	3456, 5342
MlyI	GAGTC	9 cut(s)	593, 1369, 1822, 2330, 2545, 3352, 3839, 4427, 4769
MmeI	TCCRAC	5 cut(s)	1224, 1343, 4004, 5140, 5315
Mox20I	TGGCCA	2 cut(s)	3456, 5342
Mph1103I	ATGCAT	1 cut(s)	1349
MroXI	GAANNNNTTC	3 cut(s)	1426, 2622, 5324
MscI	TGGCCA	2 cut(s)	3456, 5342
MslI	CAYNNNNRTG	8 cut(s)	687, 756, 1578, 1794, 2499, 3516, 3786, 4206
Msp20I	TGGCCA	2 cut(s)	3456, 5342
MspA1I	CMGCKG	6 cut(s)	114, 323, 2099, 3059, 4025, 4659
MspCI	CTTAAG	1 cut(s)	1286
MspI	CCGG	3 cut(s)	920, 3253, 4186
MunI	CAATTG	2 cut(s)	1122, 3465
Mva1269I	GAATGC	3 cut(s)	751, 4411, 5117
MvnI	CGCG	1 cut(s)	4486
NciI	CCSGG	2 cut(s)	3254, 4187
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	892
NheI	GCTAGC	1 cut(s)	2123
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	5 cut(s)	1734, 4096, 4476, 4573, 4741
NsiI	ATGCAT	1 cut(s)	1349
NspI	RCATGY	4 cut(s)	1762, 1922, 4523, 4620
NspV	TTCGAA	1 cut(s)	2719
PagI	TCATGA	1 cut(s)	5208
PasI	CCCWGGG	1 cut(s)	4678
PceI	AGGCCT	2 cut(s)	2154, 5255
PciI	ACATGT	2 cut(s)	1758, 1918
PciSI	GCTCTTC	2 cut(s)	3294, 3678
PcsI	WCGNNNNNNNCGW	1 cut(s)	5381
PctI	GAATGC	3 cut(s)	751, 4411, 5117
PdmI	GAANNNNTTC	3 cut(s)	1426, 2622, 5324
PflMI	CCANNNNNTGG	2 cut(s)	248, 2099
PfoI	TCCNGGA	1 cut(s)	4185
PinAI	ACCGGT	1 cut(s)	919
PleI	GAGTC	9 cut(s)	592, 1368, 1822, 2330, 2545, 3352, 3838, 4426, 4768
PmaCI	CACGTG	1 cut(s)	469
PmlI	CACGTG	1 cut(s)	469
PpsI	GAGTC	9 cut(s)	592, 1368, 1822, 2330, 2545, 3352, 3838, 4426, 4768
Ppu21I	YACGTR	1 cut(s)	469
PscI	ACATGT	2 cut(s)	1758, 1918
PshBI	ATTAAT	1 cut(s)	864
PsiI	TTATAA	1 cut(s)	4986
Psp124BI	GAGCTC	3 cut(s)	791, 1177, 4493
Psp1406I	AACGTT	2 cut(s)	4695, 5323
PspCI	CACGTG	1 cut(s)	469
PspEI	GGTNACC	1 cut(s)	2789
PspFI	CCCAGC	1 cut(s)	5307
PspOMI	GGGCCC	2 cut(s)	332, 4547
PstI	CTGCAG	2 cut(s)	2139, 4363
PstNI	CAGNNNCTG	8 cut(s)	323, 524, 965, 2099, 3002, 3535, 4427, 5032
PsuI	RGATCY	4 cut(s)	1318, 2606, 4842, 4967
PvuII	CAGCTG	4 cut(s)	114, 323, 2099, 3059
RseI	CAYNNNNRTG	8 cut(s)	687, 756, 1578, 1794, 2499, 3516, 3786, 4206
SacI	GAGCTC	3 cut(s)	791, 1177, 4493
SapI	GCTCTTC	2 cut(s)	3294, 3678
ScaI	AGTACT	1 cut(s)	4816
SchI	GAGTC	9 cut(s)	593, 1369, 1822, 2330, 2545, 3352, 3839, 4427, 4769
SexAI	ACCWGGT	1 cut(s)	2077
SfcI	CTRYAG	7 cut(s)	115, 475, 1050, 2135, 2280, 4359, 4435
SfuI	TTCGAA	1 cut(s)	2719
SinI	GGWCC	7 cut(s)	455, 1534, 2061, 2955, 3526, 5023, 5273
SmiMI	CAYNNNNRTG	8 cut(s)	687, 756, 1578, 1794, 2499, 3516, 3786, 4206
SmlI	CTYRAG	5 cut(s)	1286, 1617, 2941, 3476, 3602
SmoI	CTYRAG	5 cut(s)	1286, 1617, 2941, 3476, 3602
SpeI	ACTAGT	3 cut(s)	3938, 4100, 4274
SseBI	AGGCCT	2 cut(s)	2154, 5255
SspI	AATATT	2 cut(s)	1660, 4796
SstI	GAGCTC	3 cut(s)	791, 1177, 4493
StuI	AGGCCT	2 cut(s)	2154, 5255
StyI	CCWWGG	6 cut(s)	576, 1459, 2424, 3984, 4048, 4713
TaiI	ACGT	9 cut(s)	471, 1259, 1410, 1450, 1736, 2677, 4698, 4984, 5326
TaqII	GACCGA	1 cut(s)	5290
TatI	WGTACW	5 cut(s)	206, 3665, 3844, 3941, 4814
TauI	GCSGC	4 cut(s)	177, 3914, 4659, 5086
TscAI	CASTG	9 cut(s)	433, 1702, 1801, 2134, 2965, 4392, 4407, 4578, 5375
TseFI	GTSAC	5 cut(s)	1734, 4096, 4476, 4573, 4741
Tsp45I	GTSAC	5 cut(s)	1734, 4096, 4476, 4573, 4741
TspGWI	ACGGA	4 cut(s)	2229, 3580, 4766, 4951
TspRI	CASTG	9 cut(s)	433, 1702, 1801, 2134, 2965, 4392, 4407, 4578, 5375
Van91I	CCANNNNNTGG	2 cut(s)	248, 2099
Vha464I	CTTAAG	1 cut(s)	1286
VpaK11BI	GGWCC	7 cut(s)	455, 1534, 2061, 2955, 3526, 5023, 5273
VspI	ATTAAT	1 cut(s)	864
XagI	CCTNNNNNAGG	1 cut(s)	4556
XapI	RAATTY	5 cut(s)	1775, 3026, 3197, 3566, 3652
XbaI	TCTAGA	1 cut(s)	3950
XceI	RCATGY	4 cut(s)	1762, 1922, 4523, 4620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1150
XmiI	GTMKAC	1 cut(s)	4568
XmnI	GAANNNNTTC	3 cut(s)	1426, 2622, 5324
ZrmI	AGTACT	1 cut(s)	4816
Zsp2I	ATGCAT	1 cut(s)	1349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.