Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002065

Physical Location & Seq

Genomic Coordinates Forward (+)

4404666 .. 4405358

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0057000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCACCAATGGAGACATATTACTGAAGCTGATGGTCTACTAAGTTGGGGAATGAGGGGAAGGAACTCCCATGATATCTTATCTAACTTCGATGATCCAGACATGATGCCTTATGTTACAAATTCTGGTGATTATCTTGATGCACTAGGCTTTGAAGAATTGTTGGAGCATCTTGCTCAGGCAGAGAGCTTAAGACTAGGAGCACCTCCTGCTGCTGTCTCCTTTTTGAATAATCTGCCTCTCATTCTTATTAGTAAGGAACATGATAAGCATGATGACTTAGCCTGTGCAATTTGCAAGGATGTATTGACTATTGGCACTATACCAACTGATGACAGAGACTACGAAGAGGGGAAGCGGAATGCTGGTGGTAGAGTGGTGATCCACGTCCGGCGGCAGAATGCTAGAGAGGACAGGTCTGCTAGTGTTTCTAATAGAGCTGAAGAAGGTGAAGATCATGCTTTTAGTGAAACTAGAGTGAAGCATAGGTTCCAAGTAAGTAGGGAATCTGACTCTAATACCTCCGGTGGAGAAAATAGTCGGGGGAGTTGGTTTCTTCTTGCTGCTGCTCCAATTGTCAGTCTTGTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

197

Amino Acids

21.89

Weight (kDa)

5.21

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240
fragaria_vesca	FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530
malus_domestica	MD02G1103900.v1.1 MD15G1224300.v1.1
prunus_persica	Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1
pyrus_communis	pycom02g08170 pycom15g19930 pycom15g19940
rosa_chinensis	RchiOBHm_Chr2g0096101
rosa_laevigata	RLG00000016625
rosa_multiflora	Rmu_sc0005996.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145750
rosa_rugosa	Rorug02G0057000 Rorug02G0057100 Rorug02G0057200 Rorug02G0057200
rosa_samantha	Rh2AG104000 Rh2BG106100 Rh2CG108000 Rh2DG106700
rosa_wichuraiana	Rw2G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AciI	CCGC	2 cut(s)	358, 394
AclWI	GGATC	2 cut(s)	89, 376
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	2 cut(s)	45, 462
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	155, 229
AjiI	CACGTC	1 cut(s)	388
AluBI	AGCT	3 cut(s)	29, 189, 440
AluI	AGCT	3 cut(s)	29, 189, 440
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	3 cut(s)	7, 223, 333
AlwI	GGATC	2 cut(s)	89, 376
ApeKI	GCWGC	3 cut(s)	212, 563, 566
ApoI	RAATTY	1 cut(s)	121
AsuHPI	GGTGA	3 cut(s)	140, 391, 461
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	199, 550, 553
BccI	CCATC	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	7, 223, 333
BfaI	CTAG	5 cut(s)	146, 197, 405, 423, 474
BfrI	CTTAAG	1 cut(s)	190
BisI	GCNGC	4 cut(s)	213, 395, 564, 567
BlsI	GCNGC	4 cut(s)	214, 396, 565, 568
BmgBI	CACGTC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	491
BmsI	GCATC	3 cut(s)	96, 130, 178
Bpu10I	CCTNAGC	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	524
BseGI	GGATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	191
BseXI	GCAGC	3 cut(s)	199, 550, 553
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	391, 525
BsmAI	GTCTC	3 cut(s)	7, 223, 333
BsmI	GAATGC	2 cut(s)	367, 406
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	94, 381, 454
BspACI	CCGC	2 cut(s)	358, 394
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	89, 376
BspTI	CTTAAG	1 cut(s)	190
BssMI	GATC	3 cut(s)	94, 381, 454
Bst6I	CTCTTC	1 cut(s)	342
BstAFI	CTTAAG	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstDEI	CTNAG	3 cut(s)	41, 177, 280
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	97, 384, 457
BstMAI	GTCTC	3 cut(s)	7, 223, 333
BstMBI	GATC	3 cut(s)	94, 381, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstV1I	GCAGC	3 cut(s)	199, 550, 553
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	307
CviAII	CATG	5 cut(s)	71, 103, 263, 272, 458
CviJI	RGCY	5 cut(s)	29, 150, 189, 284, 440
CviKI_1	RGCY	5 cut(s)	29, 150, 189, 284, 440
DdeI	CTNAG	3 cut(s)	41, 177, 280
DpnI	GATC	3 cut(s)	96, 383, 456
DpnII	GATC	3 cut(s)	94, 381, 454
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	45, 462
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	5 cut(s)	74, 106, 266, 275, 461
FatI	CATG	5 cut(s)	70, 102, 262, 271, 457
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	213, 395, 564, 567
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	213, 395, 564, 567
FspBI	CTAG	5 cut(s)	146, 197, 405, 423, 474
GluI	GCNGC	4 cut(s)	213, 395, 564, 567
HapII	CCGG	2 cut(s)	391, 525
Hin1II	CATG	5 cut(s)	74, 106, 266, 275, 461
HinfI	GANTC	2 cut(s)	506, 512
HpaII	CCGG	2 cut(s)	391, 525
HphI	GGTGA	3 cut(s)	140, 391, 461
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	2 cut(s)	98, 137
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	54, 440
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	4 cut(s)	4, 143, 290, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	41, 177, 280
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	74, 106, 266, 275, 461
Kzo9I	GATC	3 cut(s)	94, 381, 454
LmnI	GCTCC	3 cut(s)	166, 200, 574
LpnPI	CCDG	9 cut(s)	111, 111, 164, 222, 298, 351, 400, 404, 538
Lsp1109I	GCAGC	3 cut(s)	199, 550, 553
LweI	GCATC	3 cut(s)	96, 130, 178
MaeI	CTAG	5 cut(s)	146, 197, 405, 423, 474
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	3 cut(s)	96, 383, 456
MboI	GATC	3 cut(s)	94, 381, 454
MboII	GAAGA	5 cut(s)	167, 359, 455, 464, 548
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	4 cut(s)	121, 158, 291, 573
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	48, 216, 249, 343, 403, 532
MseI	TTAA	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	2 cut(s)	391, 525
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	2 cut(s)	367, 406
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	3 cut(s)	94, 381, 454
NlaIII	CATG	5 cut(s)	74, 106, 266, 275, 461
NlaIV	GGNNCC	1 cut(s)	491
PctI	GAATGC	2 cut(s)	367, 406
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	214, 396, 565, 568
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PspN4I	GGNNCC	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	4 cut(s)	213, 395, 564, 567
Sau3AI	GATC	3 cut(s)	94, 381, 454
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	9 cut(s)	31, 191, 208, 390, 419, 442, 451, 491, 524
SfaNI	GCATC	3 cut(s)	96, 130, 178
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	4 cut(s)	121, 158, 291, 573
SsiI	CCGC	2 cut(s)	358, 394
SspMI	CTAG	5 cut(s)	146, 197, 405, 423, 474
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	90
TasI	AATT	4 cut(s)	121, 158, 291, 573
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseI	GCWGC	3 cut(s)	212, 563, 566
Vha464I	CTTAAG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	5 cut(s)	146, 197, 405, 423, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.