Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002065

Physical Location & Seq

Genomic Coordinates Forward (+)

14269185 .. 14270400

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTCAATGTGAAGAAGTTTCCTGAAGTGCATGGCAGTGCTGGGCAAGGTGGGAAGAAATTGACAAAGACTCTGATGTTCTTCGAAGGTTGCCCAAAGCCCTTGGGTGTTACCATAATGCTCCACGGTGCCAATGGGGATGAGTTGAAGAAGGTGAAACATGTTGTCCAATATGGAGTTTTTGCTGCTTATCACTTGGCTCTGGAGACTTCATTTTTAGCTGATGAAGGTGCTTCACTTCCAGAACTTCCCTTGAAGTCTGCGATTACTGTTGCATTACCCGATAAACCATCAAGTGTTGACAGGTCTATTTCCACCATACCTGGTTTTAGTGTCCCACCAGCTAGCAAGCCTCAGGGTCCCAATGCTAGCAGTGAGCTACAGAAATCTAATCAAGGGTTAATTATAGATAGCAATTCATCTACCACTAGTGGCCCTATTTTGAACCCGCAAGGTGCCGATTCAATTTGCTCATCTAAAGCTTGTTCTCAAGCTTTTCTCATAGAACATGCTTCGAGCTCTAGAGAATCTAGATCTCTCTTTACTTCCTTGTCTCTTCCCCAAGAGGATATCACAGAATCCTACAGTAAAGAGCTCCCCTCAATATGTGCCTCTGAAAATAAAATTGATGTGGGTTCTAAAGATTCTTGCCTGGACAATTCAGCTCAGGCTGGGGAAGCTTTGGTCAACAATGTTTTAATCTCTAATTCTCTTGCCACCTCAGAGGCATTAGGACATGGTGGCGGTGCTTTAGCTGCAACTCTTGGTGAGACTCCAGAATTCACGTCCATAAAACATCATAGTGATAATCAGAATGAGGAGGTAGGATCGTTCAAAGGAAGAGTTTCTGCCCTCACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

288

Amino Acids

30.03

Weight (kDa)

5.62

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240
fragaria_vesca	FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530
malus_domestica	MD02G1103900.v1.1 MD15G1224300.v1.1
prunus_persica	Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1
pyrus_communis	pycom02g08170 pycom15g19930 pycom15g19940
rosa_chinensis	RchiOBHm_Chr2g0096101
rosa_laevigata	RLG00000016625
rosa_multiflora	Rmu_sc0005996.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145750
rosa_rugosa	Rorug02G0057000 Rorug02G0057100 Rorug02G0057200 Rorug02G0057200
rosa_samantha	Rh2AG104000 Rh2BG106100 Rh2CG108000 Rh2DG106700
rosa_wichuraiana	Rw2G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	128, 455
AciI	CCGC	2 cut(s)	449, 744
AclWI	GGATC	1 cut(s)	835
AcsI	RAATTY	1 cut(s)	779
AcuI	CTGAAG	1 cut(s)	45
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	6 cut(s)	7, 148, 256, 445, 465, 835
AhlI	ACTAGT	1 cut(s)	428
AjiI	CACGTC	1 cut(s)	786
AjnI	CCWGG	2 cut(s)	322, 651
Alw21I	GWGCWC	2 cut(s)	521, 597
Alw26I	GTCTC	3 cut(s)	200, 558, 764
AlwI	GGATC	1 cut(s)	835
AoxI	GGCC	1 cut(s)	433
ApeKI	GCWGC	2 cut(s)	185, 755
ApoI	RAATTY	1 cut(s)	779
Asp700I	GAANNNNTTC	1 cut(s)	844
AspS9I	GGNCC	2 cut(s)	359, 434
AsuHPI	GGTGA	3 cut(s)	166, 779, 847
AsuII	TTCGAA	1 cut(s)	84
AsuNHI	GCTAGC	2 cut(s)	344, 368
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	354
BanI	GGYRCC	2 cut(s)	128, 455
BanII	GRGCYC	2 cut(s)	521, 597
Bbv12I	GWGCWC	2 cut(s)	521, 597
BbvI	GCAGC	2 cut(s)	172, 742
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	324, 653
BcoDI	GTCTC	3 cut(s)	200, 558, 764
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	5 cut(s)	345, 369, 429, 522, 531
BfmI	CTRYAG	2 cut(s)	380, 583
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	2 cut(s)	186, 756
BlsI	GCNGC	2 cut(s)	187, 757
Bme1390I	CCNGG	2 cut(s)	324, 653
Bme18I	GGWCC	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	786
BmgT120I	GGNCC	2 cut(s)	359, 434
BmiI	GGNNCC	4 cut(s)	130, 360, 361, 457
BmrFI	CCNGG	2 cut(s)	324, 653
BmtI	GCTAGC	2 cut(s)	348, 372
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpmI	CTGGAG	2 cut(s)	224, 759
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	102, 124
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	324, 653
BseDI	CCNNGG	2 cut(s)	102, 124
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	3 cut(s)	368, 680, 735
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	2 cut(s)	172, 742
BseYI	CCCAGC	2 cut(s)	41, 671
BshFI	GGCC	1 cut(s)	435
BshNI	GGYRCC	2 cut(s)	128, 455
BsiHKAI	GWGCWC	2 cut(s)	521, 597
BslFI	GGGAC	2 cut(s)	320, 345
BsmAI	GTCTC	3 cut(s)	200, 558, 764
BsmFI	GGGAC	2 cut(s)	320, 345
BsnI	GGCC	1 cut(s)	435
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	521, 597
Bsp143I	GATC	2 cut(s)	533, 827
BspACI	CCGC	2 cut(s)	449, 744
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	3 cut(s)	367, 679, 734
BspLI	GGNNCC	4 cut(s)	130, 360, 361, 457
BspOI	GCTAGC	2 cut(s)	348, 372
BspPI	GGATC	1 cut(s)	835
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	2 cut(s)	128, 455
BssECI	CCNNGG	2 cut(s)	102, 124
BssMI	GATC	2 cut(s)	533, 827
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	2 cut(s)	324, 653
Bst4CI	ACNGT	3 cut(s)	128, 271, 587
Bst6I	CTCTTC	2 cut(s)	561, 835
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	346, 350, 370
BstDEI	CTNAG	3 cut(s)	354, 666, 721
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	536, 830
BstMAI	GTCTC	3 cut(s)	200, 558, 764
BstMBI	GATC	2 cut(s)	533, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 755
BstNI	CCWGG	2 cut(s)	324, 653
BstNSI	RCATGY	2 cut(s)	164, 512
BstSCI	CCNGG	2 cut(s)	322, 651
BstSFI	CTRYAG	2 cut(s)	380, 583
BstV1I	GCAGC	2 cut(s)	172, 742
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	786
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	2 cut(s)	43, 379
BtsIMutI	CAGTG	2 cut(s)	43, 379
Cac8I	GCNNGC	3 cut(s)	346, 350, 370
Cfr13I	GGNCC	2 cut(s)	359, 434
CsiI	ACCWGGT	1 cut(s)	322
CviAII	CATG	4 cut(s)	32, 161, 509, 737
DdeI	CTNAG	3 cut(s)	354, 666, 721
DpnI	GATC	2 cut(s)	535, 829
DpnII	GATC	2 cut(s)	533, 827
Eam1104I	CTCTTC	2 cut(s)	561, 835
EarI	CTCTTC	2 cut(s)	561, 835
Ecl136II	GAGCTC	2 cut(s)	519, 595
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	2 cut(s)	521, 597
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	359
Eco53kI	GAGCTC	2 cut(s)	519, 595
Eco57I	CTGAAG	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	354
EcoICRI	GAGCTC	2 cut(s)	519, 595
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	322, 651
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	521, 597
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	35, 164, 512, 740
FaqI	GGGAC	2 cut(s)	320, 345
FatI	CATG	4 cut(s)	31, 160, 508, 736
FauI	CCCGC	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	186, 756
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	2 cut(s)	521, 597
Fsp4HI	GCNGC	2 cut(s)	186, 756
FspBI	CTAG	5 cut(s)	345, 369, 429, 522, 531
GluI	GCNGC	2 cut(s)	186, 756
GsaI	CCCAGC	2 cut(s)	45, 675
GsuI	CTGGAG	2 cut(s)	224, 759
HaeIII	GGCC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	35, 164, 512, 740
HincII	GTYRAC	2 cut(s)	301, 688
HindII	GTYRAC	2 cut(s)	301, 688
HindIII	AAGCTT	3 cut(s)	480, 492, 678
HinfI	GANTC	6 cut(s)	70, 461, 527, 578, 644, 772
HphI	GGTGA	3 cut(s)	166, 779, 847
Hpy166II	GTNNAC	2 cut(s)	301, 688
Hpy188I	TCNGA	5 cut(s)	75, 616, 724, 813, 863
Hpy188III	TCNNGA	6 cut(s)	23, 203, 242, 522, 531, 776
Hpy8I	GTNNAC	2 cut(s)	301, 688
HpyAV	CCTTC	3 cut(s)	80, 145, 221
HpyCH4III	ACNGT	3 cut(s)	128, 271, 587
HpyCH4IV	ACGT	1 cut(s)	785
HpyCH4V	TGCA	3 cut(s)	31, 275, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 755
HpyF3I	CTNAG	3 cut(s)	354, 666, 721
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	4 cut(s)	35, 164, 512, 740
KflI	GGGWCCC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	533, 827
LmnI	GCTCC	2 cut(s)	126, 600
Lsp1109I	GCAGC	2 cut(s)	172, 742
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	5 cut(s)	345, 369, 429, 522, 531
MaeII	ACGT	1 cut(s)	785
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	535, 829
MboI	GATC	2 cut(s)	533, 827
MboII	GAAGA	6 cut(s)	25, 67, 73, 160, 548, 852
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	2 cut(s)	521, 597
MluCI	AATT	8 cut(s)	59, 402, 415, 465, 624, 658, 706, 779
MlyI	GAGTC	2 cut(s)	64, 766
MnlI	CCTC	9 cut(s)	363, 559, 610, 622, 718, 730, 811, 814, 863
MroXI	GAANNNNTTC	1 cut(s)	844
MseI	TTAA	2 cut(s)	401, 698
MslI	CAYNNNNRTG	2 cut(s)	36, 801
MspR9I	CCNGG	2 cut(s)	324, 653
MvaI	CCWGG	2 cut(s)	324, 653
MwoI	GCNNNNNNNGC	2 cut(s)	677, 755
NdeII	GATC	2 cut(s)	533, 827
NheI	GCTAGC	2 cut(s)	344, 368
NlaIII	CATG	4 cut(s)	35, 164, 512, 740
NlaIV	GGNNCC	4 cut(s)	130, 360, 361, 457
NspI	RCATGY	2 cut(s)	164, 512
NspV	TTCGAA	1 cut(s)	84
PciI	ACATGT	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	4 cut(s)	461, 527, 578, 644
PkrI	GCNGC	2 cut(s)	187, 757
PleI	GAGTC	2 cut(s)	64, 766
PpsI	GAGTC	2 cut(s)	64, 766
PpuMI	RGGWCCY	1 cut(s)	359
PscI	ACATGT	1 cut(s)	160
Psp124BI	GAGCTC	2 cut(s)	521, 597
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	322, 651
PspFI	CCCAGC	2 cut(s)	41, 671
PspGI	CCWGG	2 cut(s)	322, 651
PspN4I	GGNNCC	4 cut(s)	130, 360, 361, 457
PspPI	GGNCC	2 cut(s)	359, 434
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	533
RseI	CAYNNNNRTG	2 cut(s)	36, 801
SacI	GAGCTC	2 cut(s)	521, 597
SaqAI	TTAA	2 cut(s)	401, 698
SatI	GCNGC	2 cut(s)	186, 756
Sau3AI	GATC	2 cut(s)	533, 827
Sau96I	GGNCC	2 cut(s)	359, 434
SchI	GAGTC	2 cut(s)	64, 766
ScrFI	CCNGG	2 cut(s)	324, 653
SduI	GDGCHC	2 cut(s)	521, 597
SexAI	ACCWGGT	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	380, 583
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	36, 801
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	8 cut(s)	59, 402, 415, 465, 624, 658, 706, 779
SsiI	CCGC	2 cut(s)	449, 744
SspMI	CTAG	5 cut(s)	345, 369, 429, 522, 531
SstI	GAGCTC	2 cut(s)	521, 597
StyD4I	CCNGG	2 cut(s)	322, 651
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	128, 271, 587
TaiI	ACGT	1 cut(s)	788
TaqI	TCGA	2 cut(s)	84, 515
TasI	AATT	8 cut(s)	59, 402, 415, 465, 624, 658, 706, 779
TfiI	GAWTC	4 cut(s)	461, 527, 578, 644
Tru1I	TTAA	2 cut(s)	401, 698
Tru9I	TTAA	2 cut(s)	401, 698
TscAI	CASTG	2 cut(s)	43, 379
TseI	GCWGC	2 cut(s)	185, 755
TspDTI	ATGAA	3 cut(s)	201, 240, 408
TspRI	CASTG	2 cut(s)	43, 379
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	779
XbaI	TCTAGA	2 cut(s)	521, 530
XceI	RCATGY	2 cut(s)	164, 512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	5 cut(s)	345, 369, 429, 522, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.