Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002065

Physical Location & Seq

Genomic Coordinates Reverse (-)

83653557 .. 83663731

Gene Structure 10175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGCCCTCAGAAGCGCATATTCATTGTTATACTCATAGACAAGGAAGCCTTACAATATCTGTTAAGAAACTCCCAGAGATTTTCCTGCCAGGGGAAAAGGAAGGAAAAATATGGATGTGGCATAGGTGCTTGAGATGTCCTCGGACCAGTGGCTTCCCTCCAGCCACTCGAAGAGTTGTAATGTCAGATGCTGCTTGGGGTTTATCTTTTGGGAAATTTCTGGAATTGAGCTTTTCAAATCATGCAGCTGCAAACAGAGTTGCAAGCTGTGGTCATTCCCTGCACAGAGATTGTCTTCGGTTTTATGGGTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCCTCAATTCGTATTCACTCTGTTTGTCTGCCCCCACCAAAACTTGAATTTTACTATGATAATCAGGAATGGATACAAAAAGAAGCATATGAGGTGGGCAACCGGGCGGAGCTTCTATTTACTGAATTACATAGTGCTCTTCATCAGATTTTACAGAAGATAAAAGTTGCGGAGACACAGGATGGTGGTAAGAAAGCACCTGAATCGATTCATCAAATTGTAGAACTTGAAGGGATGCTTCAAAAGGAAAGGGAAGACTTTGAGAAATCATTACAAAATGTGATAAAGGGGGAGGTGAAATCTGGCGAGCCTGCAATTGATATTCTTGAGATCAATAAATTGCGGAGGCAGTTACTCTTCCATTCTTATGTTTGGGACCAGCGCCTGATTCGTGCAGCCAGTCTAAGCAATAATAAATTTCAGGAAGGTTTAACCAGTTCCGTTACCAAACTCAAGGAGAAACCTATTGGCATGGAGAAGGTTGTCAAAACACCAGGAAGAAATTTCAGTAGTTGTACAACTCTTCCCGAAATCAAGCCTGGTATAAATCTTAATCAAGGAGGAGATGCTGGCTACTTTAGCCAGATGGGAGGGGTTCAGAACAGAACTGAAATGGGTCTGGACACAGATCATGGGAATGAGACCTCTGCAAATGTCCTTGATAAATCTGATCCTTTGGAGTCTGAAAAAATTGTACAAATGGGTCTCTCGGAAGAGAATGAATGTTCGGCTGTGGAAAGTTTATCTGATACCCTTGATGCGGCTTGGACTGGTACAACCCACCCAACTAGTACAACATCTAGAGAGAATGGCTATTCACTTCCTCTTCCAACCTTGGTAAAATCATCAACTGTGGTAAAAAATGTTGCATCCGCTGTGGAAAATGGTACTGTTGACCAAGGTGGGGTACAGGCAACTCGTTCTCTTATTTCTACATTTCCTGCTGTCACTAGTTCATTCAGTAAAAGTGCTTCCTTTAACACTCAAAAGCTATGTATTGGTGAGCGCAGTCCTGTCTATGTTGCACGGTTCCGGGAACTGGAACGGCATACTGGTGCCAGGTTGCTACTGCCGATTGGTGTTAATGATACAGTTATCCCTGTTTTTGATGATGAGCCCACTAGTGTTATTGCATATACCCTCGTCTCTCCTAATTATCATTTGCAGATTTCTGAGCCTGATAGACCAATTGATTCTGCAGTCTCATTACCGCTTTTTGATTCAGCGAATCTTCTCTCACTGAATGCTTTTGATGAGTCAGTTTCTGAGACCTACAGAGGTCTTAGTTCTTCTGATGAGAGCATCTTATCCATCTCACATTCGCGGAGCTCTGAATCTCTTGTGTCAAAGGGTATACATGCTAGAGTATCCTTTACAGATGAGGGGCCCCTCGGTAAGGTGAAGTATACAGTGACTTGTTACTACGCATCGCAGTTTGAGGCATTAAGGAAGGCATGTTGCCCTTCTGAATTAGATTTTGTGCGGTCTCTTAGCCGCTGTAAAAAGTGGGGTGCCCAGGGTGGAAAGAGCAATGTTTTCTTTGCTAAAACCTTGGATGATCGGTTTATCATCAAACAAGTCACAAAGACGGAGCTGGAGTCATTTATCAAGTTTGCACCAGCTTATTTCAAATATTTGTCTGATTCAATCAGTACTAGAAGCCCAACTTGCCTAGCAAAGATCCTGGGTATCTATCAGGTTTCATCAAAGCATGGTAAAGCAGGGAAAGAGACAAAGATGGATGTCTTAGTAATGGAGAATCTATTATTTAGACGGAATGTCTCACGGCTCTATGACCTGAAAGGATCTTCTCGATCACGTTATAATCCAGATACAAGTGGGAGCAATAAAGTGCTACTGGACCAGAATCTGATTGAAGCAATGCCTACTTCTCCAATTTTTGTGGGGAACAGGGCAAAGCGGCTATTGGAGAGAGCTGTCTGGAATGATACTGCATTCCTTGCTTCAATCGATGTGATGGACTACTCATTACTGGTTGGAGTGGATGAGGAAAAGCACGAGCTAGTTTTGGGGATCATTGATTTCATGAGGCAATATACATGGGACAAGCACCTTGAAACTTGGGTGAAGGCCTCAGGCATCCTCGGAGGACCAAAGAATACATCTCCAACCGTGATTTCACCCCAGCAGTATAAGAAACGTTTCAGGAAAGCTATGGCCACTTACTTTCTGATGCTTCCCGATCAGTGGTCTCCTGAGGCGATTGTCCCAAGTGGGTCGCAATCTGACCATTTTGAGGAAACTTCCCAAGCTCAATCTGAAGCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

876

Amino Acids

97.66

Weight (kDa)

7.82

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	619 - 785	7.4e-35	Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K	PF01504	784 - 840	2.9e-08	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240
fragaria_vesca	FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530
malus_domestica	MD02G1103900.v1.1 MD15G1224300.v1.1
prunus_persica	Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1
pyrus_communis	pycom02g08170 pycom15g19930 pycom15g19940
rosa_chinensis	RchiOBHm_Chr2g0096101
rosa_laevigata	RLG00000016625
rosa_multiflora	Rmu_sc0005996.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145750
rosa_rugosa	Rorug02G0057000 Rorug02G0057100 Rorug02G0057200 Rorug02G0057200
rosa_samantha	Rh2AG104000 Rh2BG106100 Rh2CG108000 Rh2DG106700
rosa_wichuraiana	Rw2G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2163
AccB1I	GGYRCC	2 cut(s)	1394, 1850
AccI	GTMKAC	2 cut(s)	1693, 1745
AccII	CGCG	1 cut(s)	1663
AclI	AACGTT	1 cut(s)	2500
AclWI	GGATC	4 cut(s)	1004, 2014, 2152, 2381
AcoI	YGGCCR	1 cut(s)	2517
AcsI	RAATTY	4 cut(s)	215, 386, 755, 841
AfaI	GTAC	7 cut(s)	856, 1035, 1114, 1132, 1228, 1248, 1993
AfiI	CCNNNNNNNGG	7 cut(s)	91, 1099, 1243, 1378, 1735, 2547, 2596
AgsI	TTSAA	9 cut(s)	237, 386, 569, 581, 1969, 1986, 2216, 2307, 2417
AhdI	GACNNNNNGTC	1 cut(s)	2117
AhlI	ACTAGT	3 cut(s)	1127, 1289, 1460
AjnI	CCWGG	6 cut(s)	88, 832, 877, 1397, 1854, 2022
AjuI	GAANNNNNNNTTGG	2 cut(s)	2461, 2493
Alw21I	GWGCWC	2 cut(s)	478, 1670
AlwI	GGATC	4 cut(s)	1004, 2014, 2152, 2381
AlwNI	CAGNNNCTG	4 cut(s)	191, 724, 1604, 2209
AoxI	GGCC	3 cut(s)	1724, 2430, 2517
ApaI	GGGCCC	1 cut(s)	1728
ApeKI	GCWGC	4 cut(s)	191, 245, 248, 734
ApoI	RAATTY	4 cut(s)	215, 386, 755, 841
Asp700I	GAANNNNTTC	2 cut(s)	546, 2501
AspLEI	GCGC	3 cut(s)	16, 723, 1347
AspS9I	GGNCC	6 cut(s)	144, 715, 1724, 1725, 2200, 2450
AsuC2I	CCSGG	2 cut(s)	443, 1373
AsuHPI	GGTGA	5 cut(s)	646, 1352, 1750, 2437, 2472
AvaII	GGWCC	4 cut(s)	144, 715, 2200, 2450
AxyI	CCTNAGG	2 cut(s)	2434, 2556
BaeGI	GKGCMC	2 cut(s)	1728, 1855
BalI	TGGCCA	1 cut(s)	2519
BanI	GGYRCC	2 cut(s)	1394, 1850
BanII	GRGCYC	3 cut(s)	1458, 1670, 1728
BarI	GAAGNNNNNNTAC	2 cut(s)	1294, 1326
BauI	CACGAG	1 cut(s)	2357
BbsI	GAAGAC	2 cut(s)	287, 600
Bbv12I	GWGCWC	2 cut(s)	478, 1670
BbvI	GCAGC	4 cut(s)	178, 235, 257, 746
BccI	CCATC	5 cut(s)	515, 919, 1658, 2071, 2311
BceAI	ACGGC	2 cut(s)	1400, 2141
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	6 cut(s)	90, 834, 879, 1399, 1856, 2024
BciVI	GTATCC	2 cut(s)	405, 1717
BcnI	CCSGG	2 cut(s)	443, 1373
BcuI	ACTAGT	3 cut(s)	1127, 1289, 1460
BfaI	CTAG	8 cut(s)	1128, 1140, 1290, 1461, 1701, 1995, 2012, 2363
BfmI	CTRYAG	2 cut(s)	1536, 1612
BfoI	RGCGCY	1 cut(s)	724
BfuI	GTATCC	2 cut(s)	405, 1717
BisI	GCNGC	7 cut(s)	192, 246, 249, 735, 1101, 1834, 2261
BlsI	GCNGC	7 cut(s)	193, 247, 250, 736, 1102, 1835, 2262
BmcAI	AGTACT	1 cut(s)	1993
Bme1390I	CCNGG	8 cut(s)	90, 443, 834, 879, 1373, 1399, 1856, 2024
Bme18I	GGWCC	4 cut(s)	144, 715, 2200, 2450
BmeRI	GACNNNNNGTC	1 cut(s)	2117
BmgT120I	GGNCC	6 cut(s)	144, 715, 1724, 1725, 2200, 2450
BmiI	GGNNCC	7 cut(s)	716, 1370, 1396, 1725, 1726, 1727, 1852
BmrFI	CCNGG	8 cut(s)	90, 443, 834, 879, 1373, 1399, 1856, 2024
BmsI	GCATC	9 cut(s)	178, 564, 895, 1087, 1217, 1650, 1775, 2448, 2523
BpiI	GAAGAC	2 cut(s)	287, 600
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpmI	CTGGAG	2 cut(s)	144, 1955
BpuEI	CTTGAG	3 cut(s)	151, 686, 776
BpuMI	CCSGG	2 cut(s)	443, 1373
Bsa29I	ATCGAT	2 cut(s)	545, 2310
BsaI	GGTCTC	5 cut(s)	974, 1049, 1601, 1830, 2556
BsaXI	ACNNNNNCTCC	2 cut(s)	1922, 1952
Bsc4I	CCNNNNNNNGG	7 cut(s)	91, 1099, 1243, 1378, 1735, 2547, 2596
Bse1I	ACTGG	8 cut(s)	147, 738, 774, 1114, 1383, 1396, 2202, 2337
Bse21I	CCTNAGG	2 cut(s)	2434, 2556
Bse3DI	GCAATG	2 cut(s)	1876, 2226
BseBI	CCWGG	6 cut(s)	90, 834, 879, 1399, 1856, 2024
BseCI	ATCGAT	2 cut(s)	545, 2310
BseGI	GGATG	8 cut(s)	120, 526, 579, 1208, 1900, 2086, 2350, 2439
BseLI	CCNNNNNNNGG	7 cut(s)	91, 1099, 1243, 1378, 1735, 2547, 2596
BseMI	GCAATG	2 cut(s)	1876, 2226
BseMII	CTCAG	5 cut(s)	21, 1503, 1596, 2448, 2547
BseNI	ACTGG	8 cut(s)	147, 738, 774, 1114, 1383, 1396, 2202, 2337
BseRI	GAGGAG	1 cut(s)	915
BseSI	GKGCMC	2 cut(s)	1728, 1855
BseXI	GCAGC	4 cut(s)	178, 235, 257, 746
BseYI	CCCAGC	1 cut(s)	2484
BsgI	GTGCAG	2 cut(s)	266, 753
Bsh1236I	CGCG	1 cut(s)	1663
BshFI	GGCC	3 cut(s)	1726, 2432, 2519
BshNI	GGYRCC	2 cut(s)	1394, 1850
BshVI	ATCGAT	2 cut(s)	545, 2310
BsiHKAI	GWGCWC	2 cut(s)	478, 1670
BsiSI	CCGG	2 cut(s)	442, 1372
BslFI	GGGAC	3 cut(s)	728, 2417, 2552
BslI	CCNNNNNNNGG	7 cut(s)	91, 1099, 1243, 1378, 1735, 2547, 2596
BsmBI	CGTCTC	1 cut(s)	1489
BsmFI	GGGAC	3 cut(s)	728, 2417, 2552
BsmI	GAATGC	2 cut(s)	1588, 2294
BsnI	GGCC	3 cut(s)	1726, 2432, 2519
Bso31I	GGTCTC	5 cut(s)	974, 1049, 1601, 1830, 2556
Bsp120I	GGGCCC	1 cut(s)	1724
Bsp1286I	GDGCHC	5 cut(s)	478, 1458, 1670, 1728, 1855
Bsp1407I	TGTACA	2 cut(s)	854, 1033
Bsp143I	GATC	9 cut(s)	669, 967, 1009, 1897, 2019, 2144, 2153, 2373, 2542
BspANI	GGCC	3 cut(s)	1726, 2432, 2519
BspCNI	CTCAG	5 cut(s)	20, 1504, 1597, 2447, 2548
BspDI	ATCGAT	2 cut(s)	545, 2310
BspFNI	CGCG	1 cut(s)	1663
BspHI	TCATGA	1 cut(s)	2385
BspLI	GGNNCC	7 cut(s)	716, 1370, 1396, 1725, 1726, 1727, 1852
BspMAI	CTGCAG	1 cut(s)	1540
BspPI	GGATC	4 cut(s)	1004, 2014, 2152, 2381
BspQI	GCTCTTC	1 cut(s)	483
BspT107I	GGYRCC	2 cut(s)	1394, 1850
BspTNI	GGTCTC	5 cut(s)	974, 1049, 1601, 1830, 2556
BsrDI	GCAATG	2 cut(s)	1876, 2226
BsrGI	TGTACA	2 cut(s)	854, 1033
BsrI	ACTGG	8 cut(s)	147, 738, 774, 1114, 1383, 1396, 2202, 2337
BssMI	GATC	9 cut(s)	669, 967, 1009, 1897, 2019, 2144, 2153, 2373, 2542
BssNAI	GTATAC	2 cut(s)	1694, 1746
BssSI	CACGAG	1 cut(s)	2357
BssT1I	CCWWGG	3 cut(s)	1173, 1237, 1890
Bst1107I	GTATAC	2 cut(s)	1694, 1746
Bst2BI	CACGAG	1 cut(s)	2357
Bst2UI	CCWGG	6 cut(s)	90, 834, 879, 1399, 1856, 2024
Bst4CI	ACNGT	6 cut(s)	1192, 1231, 1368, 1432, 1750, 2473
Bst6I	CTCTTC	6 cut(s)	166, 483, 701, 867, 1047, 1170
BstAPI	GCANNNNNTGC	1 cut(s)	2300
BstAUI	TGTACA	2 cut(s)	854, 1033
BstC8I	GCNNGC	5 cut(s)	265, 328, 647, 651, 910
BstDEI	CTNAG	9 cut(s)	7, 743, 1512, 1605, 1622, 1829, 2086, 2434, 2556
BstENI	CCTNNNNNAGG	1 cut(s)	1733
BstF5I	GGATG	8 cut(s)	120, 526, 579, 1208, 1900, 2086, 2350, 2439
BstFNI	CGCG	1 cut(s)	1663
BstH2I	RGCGCY	1 cut(s)	724
BstHHI	GCGC	3 cut(s)	16, 723, 1347
BstKTI	GATC	9 cut(s)	672, 970, 1012, 1900, 2022, 2147, 2156, 2376, 2545
BstMBI	GATC	9 cut(s)	669, 967, 1009, 1897, 2019, 2144, 2153, 2373, 2542
BstMWI	GCNNNNNNNGC	3 cut(s)	918, 2007, 2300
BstNI	CCWGG	6 cut(s)	90, 834, 879, 1399, 1856, 2024
BstNSI	RCATGY	2 cut(s)	1700, 1797
BstSCI	CCNGG	8 cut(s)	88, 441, 832, 877, 1371, 1397, 1854, 2022
BstSFI	CTRYAG	2 cut(s)	1536, 1612
BstSLI	GKGCMC	2 cut(s)	1728, 1855
BstUI	CGCG	1 cut(s)	1663
BstV1I	GCAGC	4 cut(s)	178, 235, 257, 746
BstV2I	GAAGAC	2 cut(s)	287, 600
BstX2I	RGATCY	2 cut(s)	2019, 2144
BstYI	RGATCY	2 cut(s)	2019, 2144
BstZ17I	GTATAC	2 cut(s)	1694, 1746
Bsu15I	ATCGAT	2 cut(s)	545, 2310
Bsu36I	CCTNAGG	2 cut(s)	2434, 2556
BsuI	GTATCC	2 cut(s)	405, 1717
BsuRI	GGCC	3 cut(s)	1726, 2432, 2519
BsuTUI	ATCGAT	2 cut(s)	545, 2310
BtgZI	GCGATG	1 cut(s)	1752
BtsCI	GGATG	8 cut(s)	120, 526, 579, 1208, 1900, 2086, 2350, 2439
BtsIMutI	CAGTG	4 cut(s)	154, 1577, 1755, 2552
Cac8I	GCNNGC	5 cut(s)	265, 328, 647, 651, 910
CaiI	CAGNNNCTG	4 cut(s)	191, 724, 1604, 2209
CciI	TCATGA	1 cut(s)	2385
CfoI	GCGC	3 cut(s)	16, 723, 1347
Cfr13I	GGNCC	6 cut(s)	144, 715, 1724, 1725, 2200, 2450
ClaI	ATCGAT	2 cut(s)	545, 2310
Csp6I	GTAC	7 cut(s)	855, 1034, 1113, 1131, 1227, 1247, 1992
CspCI	CAANNNNNGTGG	2 cut(s)	2223, 2258
CviAII	CATG	8 cut(s)	242, 811, 971, 1697, 1794, 2051, 2386, 2400
CviQI	GTAC	7 cut(s)	855, 1034, 1113, 1131, 1227, 1247, 1992
DdeI	CTNAG	9 cut(s)	7, 743, 1512, 1605, 1622, 1829, 2086, 2434, 2556
DpnI	GATC	9 cut(s)	671, 969, 1011, 1899, 2021, 2146, 2155, 2375, 2544
DpnII	GATC	9 cut(s)	669, 967, 1009, 1897, 2019, 2144, 2153, 2373, 2542
DriI	GACNNNNNGTC	1 cut(s)	2117
EaeI	YGGCCR	1 cut(s)	2517
Eam1104I	CTCTTC	6 cut(s)	166, 483, 701, 867, 1047, 1170
Eam1105I	GACNNNNNGTC	1 cut(s)	2117
EarI	CTCTTC	6 cut(s)	166, 483, 701, 867, 1047, 1170
EciI	GGCGGA	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	1668
Eco130I	CCWWGG	3 cut(s)	1173, 1237, 1890
Eco147I	AGGCCT	1 cut(s)	2432
Eco24I	GRGCYC	3 cut(s)	1458, 1670, 1728
Eco31I	GGTCTC	5 cut(s)	974, 1049, 1601, 1830, 2556
Eco47I	GGWCC	4 cut(s)	144, 715, 2200, 2450
Eco53kI	GAGCTC	1 cut(s)	1668
Eco81I	CCTNAGG	2 cut(s)	2434, 2556
EcoICRI	GAGCTC	1 cut(s)	1668
EcoNI	CCTNNNNNAGG	1 cut(s)	1733
EcoO109I	RGGNCCY	2 cut(s)	1724, 1725
EcoRII	CCWGG	6 cut(s)	88, 832, 877, 1397, 1854, 2022
EcoT14I	CCWWGG	3 cut(s)	1173, 1237, 1890
EcoT38I	GRGCYC	3 cut(s)	1458, 1670, 1728
ErhI	CCWWGG	3 cut(s)	1173, 1237, 1890
Esp3I	CGTCTC	1 cut(s)	1489
FaeI	CATG	8 cut(s)	245, 814, 974, 1700, 1797, 2054, 2389, 2403
FalI	AAGNNNNNCTT	6 cut(s)	33, 65, 561, 593, 1990, 2022
FaqI	GGGAC	3 cut(s)	728, 2417, 2552
FatI	CATG	8 cut(s)	241, 810, 970, 1696, 1793, 2050, 2385, 2399
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	1693, 1745
Fnu4HI	GCNGC	7 cut(s)	192, 246, 249, 735, 1101, 1834, 2261
FokI	GGATG	8 cut(s)	127, 533, 586, 1195, 1907, 2093, 2357, 2426
FriOI	GRGCYC	3 cut(s)	1458, 1670, 1728
Fsp4HI	GCNGC	7 cut(s)	192, 246, 249, 735, 1101, 1834, 2261
FspBI	CTAG	8 cut(s)	1128, 1140, 1290, 1461, 1701, 1995, 2012, 2363
GlaI	GCGC	3 cut(s)	15, 722, 1346
GluI	GCNGC	7 cut(s)	192, 246, 249, 735, 1101, 1834, 2261
GsaI	CCCAGC	1 cut(s)	2488
GsuI	CTGGAG	2 cut(s)	144, 1955
HaeII	RGCGCY	1 cut(s)	724
HaeIII	GGCC	3 cut(s)	1726, 2432, 2519
HapII	CCGG	2 cut(s)	442, 1372
HhaI	GCGC	3 cut(s)	16, 723, 1347
Hin1II	CATG	8 cut(s)	245, 814, 974, 1700, 1797, 2054, 2389, 2403
Hin6I	GCGC	3 cut(s)	14, 721, 1345
HinP1I	GCGC	3 cut(s)	14, 721, 1345
HincII	GTYRAC	1 cut(s)	1234
HindII	GTYRAC	1 cut(s)	1234
HpaII	CCGG	2 cut(s)	442, 1372
HphI	GGTGA	5 cut(s)	646, 1352, 1750, 2437, 2472
Hpy166II	GTNNAC	3 cut(s)	1234, 1694, 1746
Hpy8I	GTNNAC	3 cut(s)	1234, 1694, 1746
HpyAV	CCTTC	7 cut(s)	95, 563, 758, 811, 1783, 1812, 2422
HpyCH4III	ACNGT	6 cut(s)	1192, 1231, 1368, 1432, 1750, 2473
HpyCH4IV	ACGT	2 cut(s)	2158, 2500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	918, 2007, 2300
HpyF3I	CTNAG	9 cut(s)	7, 743, 1512, 1605, 1622, 1829, 2086, 2434, 2556
HpySE526I	ACGT	2 cut(s)	2158, 2500
Hsp92II	CATG	8 cut(s)	245, 814, 974, 1700, 1797, 2054, 2389, 2403
HspAI	GCGC	3 cut(s)	14, 721, 1345
Kzo9I	GATC	9 cut(s)	669, 967, 1009, 1897, 2019, 2144, 2153, 2373, 2542
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	4 cut(s)	448, 1665, 1930, 2181
Lsp1109I	GCAGC	4 cut(s)	178, 235, 257, 746
LweI	GCATC	9 cut(s)	178, 564, 895, 1087, 1217, 1650, 1775, 2448, 2523
MaeI	CTAG	8 cut(s)	1128, 1140, 1290, 1461, 1701, 1995, 2012, 2363
MaeII	ACGT	2 cut(s)	2158, 2500
MaeIII	GTNAC	6 cut(s)	690, 781, 1285, 1750, 1757, 1918
MalI	GATC	9 cut(s)	671, 969, 1011, 1899, 2021, 2146, 2155, 2375, 2544
MboI	GATC	9 cut(s)	669, 967, 1009, 1897, 2019, 2144, 2153, 2373, 2542
MfeI	CAATTG	2 cut(s)	654, 1527
MflI	RGATCY	2 cut(s)	2019, 2144
MhlI	GDGCHC	5 cut(s)	478, 1458, 1670, 1728, 1855
MlsI	TGGCCA	1 cut(s)	2519
MluNI	TGGCCA	1 cut(s)	2519
MlyI	GAGTC	3 cut(s)	1028, 1604, 1946
MmeI	TCCRAC	3 cut(s)	1193, 2317, 2492
Mox20I	TGGCCA	1 cut(s)	2519
MroXI	GAANNNNTTC	2 cut(s)	546, 2501
MscI	TGGCCA	1 cut(s)	2519
MseI	TTAA	6 cut(s)	63, 770, 891, 1317, 1422, 1784
MslI	CAYNNNNRTG	3 cut(s)	705, 975, 1392
Msp20I	TGGCCA	1 cut(s)	2519
MspA1I	CMGCKG	3 cut(s)	248, 1214, 1836
MspI	CCGG	2 cut(s)	442, 1372
MspR9I	CCNGG	8 cut(s)	90, 443, 834, 879, 1373, 1399, 1856, 2024
MunI	CAATTG	2 cut(s)	654, 1527
Mva1269I	GAATGC	2 cut(s)	1588, 2294
MvaI	CCWGG	6 cut(s)	90, 834, 879, 1399, 1856, 2024
MvnI	CGCG	1 cut(s)	1663
MwoI	GCNNNNNNNGC	3 cut(s)	918, 2007, 2300
NciI	CCSGG	2 cut(s)	443, 1373
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	9 cut(s)	669, 967, 1009, 1897, 2019, 2144, 2153, 2373, 2542
NlaIII	CATG	8 cut(s)	245, 814, 974, 1700, 1797, 2054, 2389, 2403
NlaIV	GGNNCC	7 cut(s)	716, 1370, 1396, 1725, 1726, 1727, 1852
NmuCI	GTSAC	3 cut(s)	1285, 1750, 1918
NspI	RCATGY	2 cut(s)	1700, 1797
PagI	TCATGA	1 cut(s)	2385
PasI	CCCWGGG	1 cut(s)	1855
PceI	AGGCCT	1 cut(s)	2432
PciSI	GCTCTTC	1 cut(s)	483
PctI	GAATGC	2 cut(s)	1588, 2294
PdmI	GAANNNNTTC	2 cut(s)	546, 2501
PfoI	TCCNGGA	1 cut(s)	1371
PkrI	GCNGC	7 cut(s)	193, 247, 250, 736, 1102, 1835, 2262
PleI	GAGTC	3 cut(s)	1027, 1603, 1945
PpsI	GAGTC	3 cut(s)	1027, 1603, 1945
PsiI	TTATAA	1 cut(s)	2163
Psp124BI	GAGCTC	1 cut(s)	1670
Psp1406I	AACGTT	1 cut(s)	2500
Psp6I	CCWGG	6 cut(s)	88, 832, 877, 1397, 1854, 2022
PspFI	CCCAGC	1 cut(s)	2484
PspGI	CCWGG	6 cut(s)	88, 832, 877, 1397, 1854, 2022
PspN4I	GGNNCC	7 cut(s)	716, 1370, 1396, 1725, 1726, 1727, 1852
PspOMI	GGGCCC	1 cut(s)	1724
PspPI	GGNCC	6 cut(s)	144, 715, 1724, 1725, 2200, 2450
PstI	CTGCAG	1 cut(s)	1540
PstNI	CAGNNNCTG	4 cut(s)	191, 724, 1604, 2209
PsuI	RGATCY	2 cut(s)	2019, 2144
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	7 cut(s)	856, 1035, 1114, 1132, 1228, 1248, 1993
RsaNI	GTAC	7 cut(s)	855, 1034, 1113, 1131, 1227, 1247, 1992
RseI	CAYNNNNRTG	3 cut(s)	705, 975, 1392
SacI	GAGCTC	1 cut(s)	1670
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	6 cut(s)	63, 770, 891, 1317, 1422, 1784
SatI	GCNGC	7 cut(s)	192, 246, 249, 735, 1101, 1834, 2261
Sau3AI	GATC	9 cut(s)	669, 967, 1009, 1897, 2019, 2144, 2153, 2373, 2542
Sau96I	GGNCC	6 cut(s)	144, 715, 1724, 1725, 2200, 2450
ScaI	AGTACT	1 cut(s)	1993
SchI	GAGTC	3 cut(s)	1028, 1604, 1946
ScrFI	CCNGG	8 cut(s)	90, 443, 834, 879, 1373, 1399, 1856, 2024
SduI	GDGCHC	5 cut(s)	478, 1458, 1670, 1728, 1855
SfaNI	GCATC	9 cut(s)	178, 564, 895, 1087, 1217, 1650, 1775, 2448, 2523
SfcI	CTRYAG	2 cut(s)	1536, 1612
SinI	GGWCC	4 cut(s)	144, 715, 2200, 2450
SmiMI	CAYNNNNRTG	3 cut(s)	705, 975, 1392
SmlI	CTYRAG	3 cut(s)	130, 665, 791
SmoI	CTYRAG	3 cut(s)	130, 665, 791
SpeI	ACTAGT	3 cut(s)	1127, 1289, 1460
SseBI	AGGCCT	1 cut(s)	2432
SspI	AATATT	1 cut(s)	1973
SspMI	CTAG	8 cut(s)	1128, 1140, 1290, 1461, 1701, 1995, 2012, 2363
SstI	GAGCTC	1 cut(s)	1670
StuI	AGGCCT	1 cut(s)	2432
StyD4I	CCNGG	8 cut(s)	88, 441, 832, 877, 1371, 1397, 1854, 2022
StyI	CCWWGG	3 cut(s)	1173, 1237, 1890
TaaI	ACNGT	6 cut(s)	1192, 1231, 1368, 1432, 1750, 2473
TaiI	ACGT	2 cut(s)	2161, 2503
TaqI	TCGA	4 cut(s)	169, 545, 2152, 2310
TatI	WGTACW	4 cut(s)	854, 1033, 1130, 1991
TauI	GCSGC	3 cut(s)	1103, 1836, 2263
Tru1I	TTAA	6 cut(s)	63, 770, 891, 1317, 1422, 1784
Tru9I	TTAA	6 cut(s)	63, 770, 891, 1317, 1422, 1784
TscAI	CASTG	4 cut(s)	154, 1584, 1755, 2552
TseFI	GTSAC	3 cut(s)	1285, 1750, 1918
TseI	GCWGC	4 cut(s)	191, 245, 248, 734
Tsp45I	GTSAC	3 cut(s)	1285, 1750, 1918
TspDTI	ATGAA	7 cut(s)	11, 470, 539, 1074, 1284, 2031, 2374
TspGWI	ACGGA	3 cut(s)	769, 1943, 2128
TspRI	CASTG	4 cut(s)	154, 1584, 1755, 2552
VpaK11BI	GGWCC	4 cut(s)	144, 715, 2200, 2450
XagI	CCTNNNNNAGG	1 cut(s)	1733
XapI	RAATTY	4 cut(s)	215, 386, 755, 841
XbaI	TCTAGA	1 cut(s)	1139
XceI	RCATGY	2 cut(s)	1700, 1797
XmiI	GTMKAC	2 cut(s)	1693, 1745
XmnI	GAANNNNTTC	2 cut(s)	546, 2501
XspI	CTAG	8 cut(s)	1128, 1140, 1290, 1461, 1701, 1995, 2012, 2363
ZrmI	AGTACT	1 cut(s)	1993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.