Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002065

Physical Location & Seq

Genomic Coordinates Forward (+)

5723009 .. 5726824

Gene Structure 3816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGTTCCATGTGGAGAAGTTTCTTGAAGTGCATGGCAGTGCTGGGCAAGGTGGGAAGAAATTGACAAAGACTCTGATGTTCTTCGAAGGTTGCCCGAAGCCCTTGGGTGTTACCGTATTGCTCTATGGTGCCAATGGGGATGAGTTAAAGAAGGTGAAACATGTTGTCCAATATGGAGTTTTTGCCGCTTATCACTTGGCTCTGGAGACTTCATTTCTAGCTGATGAAGGTGCTTCACTTCCGGAACTTACTTTGAAGTCTGAGATTACTGTTGCATTACCCGATAAACCATCAAGTATTGACAGGTCTATTTCCACCATACCTGGTTTTAGTGTCCCACCGGCTGGCAAGCCTCAGGGTCCCGATGCTAGCAGGGAACTACAGAAATCTAATCAAGGGTTAATTTCAGATAACAATTCATCTACCACTAGTGGCCCCATTTTGAACATGCAAGGTGCCGATTCAATTTGCTCATCTAAAGCTTGTTCTCAAGCTTTTCTCATAGAACATGCTTTGAGCTCTAGAGAATCTAGATCTCCCTTTACTTCCTTGTCTCCACCAGAAGAGGATATCACAGAATGTTACCGTAAAGAGCTCCCCTCAATATGTGCCTCTGAAAATAAAATTGATGCAGGTTCTAAAGATTCTTGCCTGGACAATCCAGCTCAGGCTGGGGAAGCTTTGCTCAACAGTAGTTTGATCTCTAATTCTCTTGCCACCTCAGAGTCATTAGGACATGGTGGCGGTGCTTTAGCTGCAAATCATGGTGAGACTCCAGAGTTGACATCCATAAAACATCATAGTGATTATCAGAATGAGGAGGTAGGATCTTCAAAGGAAGAGTTTCCACCCTCACCTTCTGACCACCAAAGCATTTTGGTTTCCCTGTCAACACGTTGTGTGTGGAAGGGAACTGTGTGTGAACGGTCCCATCTGTTTCGAATCAAATACTACGGAAGTTTTGATAAGCCTTTGGGGAGGTTCTTACGAGATCATCTGTTCGATCAGAATTACCTTTGTCGTTCATGTGGGATGCCATCAGAAGCGCATGTTCATTGTTATACTCATAGACAAGGGAGCCTTACAATTTCTGTTAAGAAGCTCCCAGAGATTTTGCTACCTGGGGAAAGGGAAGGCAAAATTTGGATGTGGCACAGGTGCTTGAAATGTCCTCGAGCCAATGGCTTCCCTCCTGCAACTCGAAGAGTAGTCATGTCCGATGCTGCTTGGGGTTTATCGTTTGGGAAGTTTTTAGAGTTAAGCTTTTCAAATCATGCAGCTGCGAACAGAGTTGCAACTTGTGGTCATTCCCTTCACAGAGATTGTCTTCGGTTTTATGGTTTTGGAAGAATGGTTGCTTGCTTCCGCTATGCCTCCATTCATGTTCATTCTGTTTATCTTCCTCCACAAAAACTCGAATTTAACTATGATAATCAGGAATGGATACAAAAAGAAGTGGAGGAGGTGGGTCATCGGGCAGAGCTTCTCTTTACTGAATTGCACAATGCTCTTAATCAGATTTTGGAGACGAGACCAATTTCAGGGACACCGGATGGTGGGAAGAAAGCACCTGAATCAAGTCATCAAATTGTAGAACTTGAAGAGATGCTTCAAAAGGAAAGAGAAGACTTTGAGGAATCATTACAAAAAGCGATGCATAGGGAGGTGAAGTGTGGCCAGCCTGCAGTTGATATTCTTGAGATCAATAGATTAAGGAGGCAGTTGCTCTTTCATTCTTACATTTGGGATCAACGCCTAATTCAGGCTGCCAGTTTAAGTAAAAATAGTTTCCAGGAAGGCTTGAGAAGTTCCCTTCCAAAACTCAAGGAGAAACCTATCAGTTCTATGGAGAAGCTTGTCGAGACAAATATAAACTCCAAGGCAGGTAAAGGATTTAGTAGTTGTGATTCCTCTCTTCGGGAAACAAAGCCAGATGTAAGTATTTATCAAGGAGGAGATGTTGGCGGCTTTAGCCAGCCTGAAGGGGAGCAGAAGAACAATGAAATTGTTCAGAACCCGAATCATAGTAACGAGGCAAAAATTTCCACACGGTCCTCTGAAAATGCCATGGATAAATCTGATCCATTGGAGTCTGGCCTAAGTGTACGAAGGGCCCTCTCAGAAGGGAATGAGAGTCTAGTAGTGGCAAATTTATCTGATACCCTTGATGCGGCTTGGACTGGTGAAAGTCACCCAACTAGTATGATTCCTAAAGAGAATGGCTACTCTAAACCTGATTCAACCTTGGTAAATTCTCCGACTGTGATGAGAAAAGTTGCATCGAATTCAGATCTGCAAAATTGTGCTGTTGACCAAGCTGGGGTACAGACAACTGCTTCAACTCATTCTCTTAGCTCTACATCATCTCTCAAGGTATTTGACAAAAGTTATTCACTGAATGCACAAAAGATCAATATTGGTGAATACAATCCCGTCAATGTTCCAATGTTCCGCGAATCGGAAAGGCAAAGTGGTGCCAGGCTGTTACTGCCAATTGGTATTAATGACACTGTCATCCCTGTTTTTGACGATGAACCCACTAGTGTTATTGCCTATGCACTTGTCTCGCCAGATTATCATGTGCAGATTTCCGAGTCTGAGAGACCAAGAGATGCTATGGATGGTTCAGTCTCAGTACCTCTTTTTGATTCCGCAAATCTTCTCTCACTTAGCTCTTTTGATGAGTCGTTTTCTGAGACCTACAGAAATATTGGTTCTTCTGATGAGAGCATGTCATCTGTGTCACGGTCGCGGAGCTCTCAAGCTTTGGACTCACTTTTGTCAAAGGACATTCATGCTAGAGTTTCTTTTACAGATGATGGCCCCCTTGGTAAGGTGAAGTATACTGTGACTTGTTACTACGCAACACGGTTTGAGGCTTTAAGGAGGACGTGTTGCCCTTCTGAAAGAGATTTCGTGCGATCAGATCTCAGCCGCTGTAAGAAGTGGGGCGCCCAGGGTGGCAAGAGCAACGTTTTCTTTGCAAAAACCTTGGATCGATCGATTTATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

1005

Amino Acids

110.63

Weight (kDa)

6.13

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240 AT4G33240
fragaria_vesca	FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530 FvH4_1g09530
malus_domestica	MD02G1103900.v1.1 MD15G1224300.v1.1
prunus_persica	Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1 Prupe.7G191000_v2.0.a1
pyrus_communis	pycom02g08170 pycom15g19930 pycom15g19940
rosa_chinensis	RchiOBHm_Chr2g0096101
rosa_laevigata	RLG00000016625
rosa_multiflora	Rmu_sc0005996.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145750
rosa_rugosa	Rorug02G0057000 Rorug02G0057100 Rorug02G0057200 Rorug02G0057200
rosa_samantha	Rh2AG104000 Rh2BG106100 Rh2CG108000 Rh2DG106700
rosa_wichuraiana	Rw2G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	623, 1874
AccB1I	GGYRCC	4 cut(s)	128, 455, 2474, 2951
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	2843
AccII	CGCG	2 cut(s)	2454, 2752
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	9 cut(s)	186, 744, 1366, 1965, 2171, 2452, 2652, 2752, 2935
AclI	AACGTT	1 cut(s)	2973
AclWI	GGATC	4 cut(s)	835, 1755, 2075, 3003
AcoI	YGGCCR	1 cut(s)	1675
AcsI	RAATTY	6 cut(s)	1140, 1418, 2040, 2149, 2251, 2284
AcuI	CTGAAG	1 cut(s)	2001
AcyI	GRCGYC	1 cut(s)	2952
AdeI	CACNNNGTG	1 cut(s)	899
AfaI	GTAC	3 cut(s)	2106, 2325, 2637
AfiI	CCNNNNNNNGG	9 cut(s)	344, 1541, 1556, 1762, 1917, 2170, 2320, 2458, 2833
AflIII	ACRYGT	3 cut(s)	160, 893, 2891
AhlI	ACTAGT	3 cut(s)	428, 2198, 2540
AjiI	CACGTC	1 cut(s)	2892
AjnI	CCWGG	6 cut(s)	322, 651, 1120, 1791, 2477, 2955
Alw21I	GWGCWC	3 cut(s)	521, 597, 2759
AlwI	GGATC	4 cut(s)	835, 1755, 2075, 3003
AlwNI	CAGNNNCTG	1 cut(s)	2937
Ama87I	CYCGRG	1 cut(s)	1173
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	5 cut(s)	433, 1675, 2095, 2112, 2821
ApaI	GGGCCC	1 cut(s)	2116
ApeKI	GCWGC	5 cut(s)	755, 1223, 1277, 1280, 1766
ApoI	RAATTY	6 cut(s)	1140, 1418, 2040, 2149, 2251, 2284
AseI	ATTAAT	1 cut(s)	2502
Asp700I	GAANNNNTTC	2 cut(s)	843, 2007
AspLEI	GCGC	2 cut(s)	1048, 2954
AspS9I	GGNCC	7 cut(s)	359, 434, 927, 2052, 2112, 2113, 2822
AsuHPI	GGTGA	8 cut(s)	166, 779, 846, 1678, 2183, 2195, 2432, 2848
AsuII	TTCGAA	2 cut(s)	84, 940
AsuNHI	GCTAGC	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	1173
AvaII	GGWCC	3 cut(s)	359, 927, 2052
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	2116
BalI	TGGCCA	1 cut(s)	1677
BanI	GGYRCC	4 cut(s)	128, 455, 2474, 2951
BanII	GRGCYC	4 cut(s)	521, 597, 2116, 2759
BbsI	GAAGAC	2 cut(s)	1319, 1632
Bbv12I	GWGCWC	3 cut(s)	521, 597, 2759
BbvI	GCAGC	5 cut(s)	742, 1210, 1267, 1289, 1753
BccI	CCATC	6 cut(s)	298, 939, 1045, 1547, 2615, 2813
BcgI	CGANNNNNNTGC	2 cut(s)	2547, 2581
BciT130I	CCWGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
BciVI	GTATCC	1 cut(s)	1437
BcuI	ACTAGT	3 cut(s)	428, 2198, 2540
BfaI	CTAG	9 cut(s)	218, 369, 429, 522, 531, 2138, 2199, 2541, 2799
BfmI	CTRYAG	3 cut(s)	380, 1683, 2701
BfoI	RGCGCY	1 cut(s)	2955
BfuAI	ACCTGC	2 cut(s)	623, 1874
BfuI	GTATCC	1 cut(s)	1437
BglII	AGATCT	3 cut(s)	533, 2290, 2926
BisI	GCNGC	9 cut(s)	186, 756, 1224, 1278, 1281, 1767, 1966, 2172, 2935
BlsI	GCNGC	9 cut(s)	187, 757, 1225, 1279, 1282, 1768, 1967, 2173, 2936
Bme1390I	CCNGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
Bme18I	GGWCC	3 cut(s)	359, 927, 2052
BmeT110I	CYCGRG	1 cut(s)	1173
BmgBI	CACGTC	1 cut(s)	2892
BmgT120I	GGNCC	7 cut(s)	359, 434, 927, 2052, 2112, 2113, 2822
BmrFI	CCNGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
BmsI	GCATC	9 cut(s)	355, 619, 1023, 1210, 1596, 1644, 2158, 2288, 2602
BmtI	GCTAGC	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	1319, 1632
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpmI	CTGGAG	2 cut(s)	224, 759
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu14I	TTCGAA	2 cut(s)	84, 940
BpuEI	CTTGAG	6 cut(s)	474, 1718, 1808, 1822, 2354, 2745
Bsa29I	ATCGAT	2 cut(s)	2998, 3002
BsaHI	GRCGYC	1 cut(s)	2952
BsaI	GGTCTC	3 cut(s)	1525, 2596, 2690
BsaJI	CCNNGG	9 cut(s)	102, 1121, 1878, 2067, 2244, 2827, 2955, 2956, 2991
BsaWI	WCCGGW	2 cut(s)	241, 1549
BsaXI	ACNNNNNCTCC	6 cut(s)	1655, 1685, 1944, 1974, 2878, 2908
Bsc4I	CCNNNNNNNGG	9 cut(s)	344, 1541, 1556, 1762, 1917, 2170, 2320, 2458, 2833
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	1770, 2185
Bse21I	CCTNAGG	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
BseCI	ATCGAT	2 cut(s)	2998, 3002
BseDI	CCNNGG	9 cut(s)	102, 1121, 1878, 2067, 2244, 2827, 2955, 2956, 2991
BseGI	GGATG	7 cut(s)	145, 785, 1038, 1152, 1558, 2514, 2626
BseLI	CCNNNNNNNGG	9 cut(s)	344, 1541, 1556, 1762, 1917, 2170, 2320, 2458, 2833
BseMII	CTCAG	9 cut(s)	252, 368, 680, 735, 2133, 2589, 2646, 2685, 2944
BseNI	ACTGG	2 cut(s)	1770, 2185
BseRI	GAGGAG	3 cut(s)	833, 1475, 1968
BseSI	GKGCMC	1 cut(s)	2116
BseXI	GCAGC	5 cut(s)	742, 1210, 1267, 1289, 1753
BseYI	CCCAGC	3 cut(s)	41, 671, 2318
BsgI	GTGCAG	1 cut(s)	2603
Bsh1236I	CGCG	2 cut(s)	2454, 2752
Bsh1285I	CGRYCG	2 cut(s)	2750, 3002
BshFI	GGCC	5 cut(s)	435, 1677, 2097, 2114, 2823
BshNI	GGYRCC	4 cut(s)	128, 455, 2474, 2951
BshVI	ATCGAT	2 cut(s)	2998, 3002
BsiEI	CGRYCG	2 cut(s)	2750, 3002
BsiHKAI	GWGCWC	3 cut(s)	521, 597, 2759
BsiHKCI	CYCGRG	1 cut(s)	1173
BsiSI	CCGG	3 cut(s)	242, 341, 1550
BslFI	GGGAC	4 cut(s)	320, 345, 913, 1558
BslI	CCNNNNNNNGG	9 cut(s)	344, 1541, 1556, 1762, 1917, 2170, 2320, 2458, 2833
BsmBI	CGTCTC	1 cut(s)	1520
BsmFI	GGGAC	4 cut(s)	320, 345, 913, 1558
BsmI	GAATGC	1 cut(s)	2404
BsnI	GGCC	5 cut(s)	435, 1677, 2097, 2114, 2823
Bso31I	GGTCTC	3 cut(s)	1525, 2596, 2690
BsoBI	CYCGRG	1 cut(s)	1173
Bsp119I	TTCGAA	2 cut(s)	84, 940
Bsp120I	GGGCCC	1 cut(s)	2112
Bsp1286I	GDGCHC	4 cut(s)	521, 597, 2116, 2759
Bsp13I	TCCGGA	1 cut(s)	241
Bsp19I	CCATGG	1 cut(s)	2067
BspACI	CCGC	9 cut(s)	186, 744, 1366, 1965, 2171, 2452, 2652, 2752, 2935
BspANI	GGCC	5 cut(s)	435, 1677, 2097, 2114, 2823
BspCNI	CTCAG	9 cut(s)	253, 367, 679, 734, 2132, 2590, 2645, 2686, 2943
BspDI	ATCGAT	2 cut(s)	2998, 3002
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	2 cut(s)	2454, 2752
BspMAI	CTGCAG	1 cut(s)	1687
BspMI	ACCTGC	2 cut(s)	623, 1874
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	4 cut(s)	835, 1755, 2075, 3003
BspT104I	TTCGAA	2 cut(s)	84, 940
BspT107I	GGYRCC	4 cut(s)	128, 455, 2474, 2951
BspTNI	GGTCTC	3 cut(s)	1525, 2596, 2690
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	1770, 2185
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	9 cut(s)	102, 1121, 1878, 2067, 2244, 2827, 2955, 2956, 2991
BssNAI	GTATAC	1 cut(s)	2844
BssNI	GRCGYC	1 cut(s)	2952
BssT1I	CCWWGG	6 cut(s)	102, 1878, 2067, 2244, 2827, 2991
Bst1107I	GTATAC	1 cut(s)	2844
Bst2UI	CCWGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
Bst6I	CTCTTC	5 cut(s)	558, 834, 1198, 1596, 1920
BstACI	GRCGYC	1 cut(s)	2952
BstBI	TTCGAA	2 cut(s)	84, 940
BstC8I	GCNNGC	7 cut(s)	346, 350, 370, 1360, 1679, 1683, 1976
BstDSI	CCRYGG	1 cut(s)	2067
BstENI	CCTNNNNNAGG	2 cut(s)	1760, 2831
BstF5I	GGATG	7 cut(s)	145, 785, 1038, 1152, 1558, 2514, 2626
BstFNI	CGCG	2 cut(s)	2454, 2752
BstH2I	RGCGCY	1 cut(s)	2955
BstHHI	GCGC	2 cut(s)	1048, 2954
BstMCI	CGRYCG	2 cut(s)	2750, 3002
BstMWI	GCNNNNNNNGC	4 cut(s)	677, 755, 1971, 2488
BstNI	CCWGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
BstNSI	RCATGY	5 cut(s)	164, 451, 512, 1052, 2734
BstSCI	CCNGG	6 cut(s)	322, 651, 1120, 1791, 2477, 2955
BstSFI	CTRYAG	3 cut(s)	380, 1683, 2701
BstSLI	GKGCMC	1 cut(s)	2116
BstUI	CGCG	2 cut(s)	2454, 2752
BstV1I	GCAGC	5 cut(s)	742, 1210, 1267, 1289, 1753
BstV2I	GAAGAC	2 cut(s)	1319, 1632
BstX2I	RGATCY	4 cut(s)	533, 827, 2290, 2926
BstYI	RGATCY	4 cut(s)	533, 827, 2290, 2926
BstZ17I	GTATAC	1 cut(s)	2844
Bsu15I	ATCGAT	2 cut(s)	2998, 3002
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	1437
BsuRI	GGCC	5 cut(s)	435, 1677, 2097, 2114, 2823
BsuTUI	ATCGAT	2 cut(s)	2998, 3002
BtgI	CCRYGG	1 cut(s)	2067
BtgZI	GCGATG	1 cut(s)	1667
BtrI	CACGTC	1 cut(s)	2892
BtsCI	GGATG	7 cut(s)	145, 785, 1038, 1152, 1558, 2514, 2626
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	3 cut(s)	43, 2393, 2508
BveI	ACCTGC	2 cut(s)	623, 1874
Cac8I	GCNNGC	7 cut(s)	346, 350, 370, 1360, 1679, 1683, 1976
CaiI	CAGNNNCTG	1 cut(s)	2937
CfoI	GCGC	2 cut(s)	1048, 2954
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	7 cut(s)	359, 434, 927, 2052, 2112, 2113, 2822
ClaI	ATCGAT	2 cut(s)	2998, 3002
CsiI	ACCWGGT	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	2105, 2324, 2636
CviQI	GTAC	3 cut(s)	2105, 2324, 2636
DinI	GGCGCC	1 cut(s)	2953
DraIII	CACNNNGTG	1 cut(s)	899
EaeI	YGGCCR	1 cut(s)	1675
Eam1104I	CTCTTC	5 cut(s)	558, 834, 1198, 1596, 1920
EarI	CTCTTC	5 cut(s)	558, 834, 1198, 1596, 1920
Ecl136II	GAGCTC	3 cut(s)	519, 595, 2757
Eco130I	CCWWGG	6 cut(s)	102, 1878, 2067, 2244, 2827, 2991
Eco24I	GRGCYC	4 cut(s)	521, 597, 2116, 2759
Eco31I	GGTCTC	3 cut(s)	1525, 2596, 2690
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	3 cut(s)	359, 927, 2052
Eco53kI	GAGCTC	3 cut(s)	519, 595, 2757
Eco57I	CTGAAG	1 cut(s)	2001
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	1173
EcoICRI	GAGCTC	3 cut(s)	519, 595, 2757
EcoNI	CCTNNNNNAGG	2 cut(s)	1760, 2831
EcoO109I	RGGNCCY	3 cut(s)	359, 2112, 2113
EcoRI	GAATTC	1 cut(s)	2284
EcoRII	CCWGG	6 cut(s)	322, 651, 1120, 1791, 2477, 2955
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	6 cut(s)	102, 1878, 2067, 2244, 2827, 2991
EcoT22I	ATGCAT	1 cut(s)	1659
EcoT38I	GRGCYC	4 cut(s)	521, 597, 2116, 2759
EgeI	GGCGCC	1 cut(s)	2953
EheI	GGCGCC	1 cut(s)	2953
ErhI	CCWWGG	6 cut(s)	102, 1878, 2067, 2244, 2827, 2991
Esp3I	CGTCTC	1 cut(s)	1520
FalI	AAGNNNNNCTT	4 cut(s)	1065, 1097, 1593, 1625
FaqI	GGGAC	4 cut(s)	320, 345, 913, 1558
FblI	GTMKAC	1 cut(s)	2843
Fnu4HI	GCNGC	9 cut(s)	186, 756, 1224, 1278, 1281, 1767, 1966, 2172, 2935
FokI	GGATG	7 cut(s)	152, 772, 1045, 1159, 1565, 2501, 2633
FriOI	GRGCYC	4 cut(s)	521, 597, 2116, 2759
Fsp4HI	GCNGC	9 cut(s)	186, 756, 1224, 1278, 1281, 1767, 1966, 2172, 2935
FspBI	CTAG	9 cut(s)	218, 369, 429, 522, 531, 2138, 2199, 2541, 2799
GlaI	GCGC	2 cut(s)	1047, 2953
GluI	GCNGC	9 cut(s)	186, 756, 1224, 1278, 1281, 1767, 1966, 2172, 2935
GsaI	CCCAGC	3 cut(s)	45, 675, 2322
GsuI	CTGGAG	2 cut(s)	224, 759
HaeII	RGCGCY	1 cut(s)	2955
HaeIII	GGCC	5 cut(s)	435, 1677, 2097, 2114, 2823
HapII	CCGG	3 cut(s)	242, 341, 1550
HhaI	GCGC	2 cut(s)	1048, 2954
Hin1I	GRCGYC	1 cut(s)	2952
Hin6I	GCGC	2 cut(s)	1046, 2952
HinP1I	GCGC	2 cut(s)	1046, 2952
HincII	GTYRAC	3 cut(s)	783, 891, 2311
HindII	GTYRAC	3 cut(s)	783, 891, 2311
HindIII	AAGCTT	6 cut(s)	480, 492, 678, 1261, 1853, 2763
HpaII	CCGG	3 cut(s)	242, 341, 1550
HphI	GGTGA	8 cut(s)	166, 779, 846, 1678, 2183, 2195, 2432, 2848
Hpy166II	GTNNAC	6 cut(s)	783, 891, 923, 2105, 2311, 2844
Hpy8I	GTNNAC	6 cut(s)	783, 891, 923, 2105, 2311, 2844
HpyCH4IV	ACGT	3 cut(s)	895, 2891, 2973
HpyF10VI	GCNNNNNNNGC	4 cut(s)	677, 755, 1971, 2488
HpySE526I	ACGT	3 cut(s)	895, 2891, 2973
Hsp92I	GRCGYC	1 cut(s)	2952
HspAI	GCGC	2 cut(s)	1046, 2952
KasI	GGCGCC	1 cut(s)	2951
KflI	GGGWCCC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	241
LmnI	GCTCC	5 cut(s)	600, 1077, 1107, 1987, 2754
Lsp1109I	GCAGC	5 cut(s)	742, 1210, 1267, 1289, 1753
LweI	GCATC	9 cut(s)	355, 619, 1023, 1210, 1596, 1644, 2158, 2288, 2602
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	9 cut(s)	218, 369, 429, 522, 531, 2138, 2199, 2541, 2799
MaeII	ACGT	3 cut(s)	895, 2891, 2973
MaeIII	GTNAC	8 cut(s)	109, 581, 2027, 2189, 2484, 2742, 2848, 2855
MfeI	CAATTG	1 cut(s)	2493
MflI	RGATCY	4 cut(s)	533, 827, 2290, 2926
MhlI	GDGCHC	4 cut(s)	521, 597, 2116, 2759
MlsI	TGGCCA	1 cut(s)	1677
MluNI	TGGCCA	1 cut(s)	1677
Mly113I	GGCGCC	1 cut(s)	2952
MlyI	GAGTC	8 cut(s)	64, 734, 766, 2099, 2143, 2603, 2693, 2765
MmeI	TCCRAC	1 cut(s)	2282
Mox20I	TGGCCA	1 cut(s)	1677
Mph1103I	ATGCAT	1 cut(s)	1659
MroI	TCCGGA	1 cut(s)	241
MroXI	GAANNNNTTC	2 cut(s)	843, 2007
MscI	TGGCCA	1 cut(s)	1677
MslI	CAYNNNNRTG	2 cut(s)	36, 801
Msp20I	TGGCCA	1 cut(s)	1677
MspA1I	CMGCKG	2 cut(s)	1280, 2937
MspI	CCGG	3 cut(s)	242, 341, 1550
MspR9I	CCNGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
MunI	CAATTG	1 cut(s)	2493
Mva1269I	GAATGC	1 cut(s)	2404
MvaI	CCWGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
MvnI	CGCG	2 cut(s)	2454, 2752
MwoI	GCNNNNNNNGC	4 cut(s)	677, 755, 1971, 2488
NarI	GGCGCC	1 cut(s)	2952
NcoI	CCATGG	1 cut(s)	2067
NheI	GCTAGC	1 cut(s)	368
NmuCI	GTSAC	3 cut(s)	2189, 2742, 2848
NsiI	ATGCAT	1 cut(s)	1659
NspI	RCATGY	5 cut(s)	164, 451, 512, 1052, 2734
NspV	TTCGAA	2 cut(s)	84, 940
PaeR7I	CTCGAG	1 cut(s)	1173
PasI	CCCWGGG	1 cut(s)	2956
PciI	ACATGT	1 cut(s)	160
PctI	GAATGC	1 cut(s)	2404
PdmI	GAANNNNTTC	2 cut(s)	843, 2007
PflFI	GACNNNGTC	1 cut(s)	2510
PflMI	CCANNNNNTGG	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	1791
PkrI	GCNGC	9 cut(s)	187, 757, 1225, 1279, 1282, 1768, 1967, 2173, 2936
Ple19I	CGATCG	1 cut(s)	3002
PleI	GAGTC	8 cut(s)	64, 733, 766, 2098, 2142, 2602, 2692, 2765
PluTI	GGCGCC	1 cut(s)	2955
PpsI	GAGTC	8 cut(s)	64, 733, 766, 2098, 2142, 2602, 2692, 2765
PpuMI	RGGWCCY	1 cut(s)	359
PscI	ACATGT	1 cut(s)	160
PshBI	ATTAAT	1 cut(s)	2502
Psp124BI	GAGCTC	3 cut(s)	521, 597, 2759
Psp1406I	AACGTT	1 cut(s)	2973
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	6 cut(s)	322, 651, 1120, 1791, 2477, 2955
PspFI	CCCAGC	3 cut(s)	41, 671, 2318
PspGI	CCWGG	6 cut(s)	322, 651, 1120, 1791, 2477, 2955
PspOMI	GGGCCC	1 cut(s)	2112
PspPI	GGNCC	7 cut(s)	359, 434, 927, 2052, 2112, 2113, 2822
PspPPI	RGGWCCY	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	1173
PstI	CTGCAG	1 cut(s)	1687
PstNI	CAGNNNCTG	1 cut(s)	2937
PsuI	RGATCY	4 cut(s)	533, 827, 2290, 2926
PsyI	GACNNNGTC	1 cut(s)	2510
PvuI	CGATCG	1 cut(s)	3002
PvuII	CAGCTG	1 cut(s)	1280
RsaI	GTAC	3 cut(s)	2106, 2325, 2637
RsaNI	GTAC	3 cut(s)	2105, 2324, 2636
RseI	CAYNNNNRTG	2 cut(s)	36, 801
SacI	GAGCTC	3 cut(s)	521, 597, 2759
SatI	GCNGC	9 cut(s)	186, 756, 1224, 1278, 1281, 1767, 1966, 2172, 2935
Sau96I	GGNCC	7 cut(s)	359, 434, 927, 2052, 2112, 2113, 2822
SchI	GAGTC	8 cut(s)	64, 734, 766, 2099, 2143, 2603, 2693, 2765
ScrFI	CCNGG	6 cut(s)	324, 653, 1122, 1793, 2479, 2957
SduI	GDGCHC	4 cut(s)	521, 597, 2116, 2759
SexAI	ACCWGGT	1 cut(s)	322
SfaNI	GCATC	9 cut(s)	355, 619, 1023, 1210, 1596, 1644, 2158, 2288, 2602
SfcI	CTRYAG	3 cut(s)	380, 1683, 2701
SfoI	GGCGCC	1 cut(s)	2953
Sfr274I	CTCGAG	1 cut(s)	1173
SfuI	TTCGAA	2 cut(s)	84, 940
SinI	GGWCC	3 cut(s)	359, 927, 2052
SlaI	CTCGAG	1 cut(s)	1173
SmiMI	CAYNNNNRTG	2 cut(s)	36, 801
SmlI	CTYRAG	7 cut(s)	489, 1173, 1697, 1801, 1823, 2369, 2760
SmoI	CTYRAG	7 cut(s)	489, 1173, 1697, 1801, 1823, 2369, 2760
SpeI	ACTAGT	3 cut(s)	428, 2198, 2540
SsiI	CCGC	9 cut(s)	186, 744, 1366, 1965, 2171, 2452, 2652, 2752, 2935
SspDI	GGCGCC	1 cut(s)	2951
SspI	AATATT	2 cut(s)	2416, 2710
SspMI	CTAG	9 cut(s)	218, 369, 429, 522, 531, 2138, 2199, 2541, 2799
SstI	GAGCTC	3 cut(s)	521, 597, 2759
StyD4I	CCNGG	6 cut(s)	322, 651, 1120, 1791, 2477, 2955
StyI	CCWWGG	6 cut(s)	102, 1878, 2067, 2244, 2827, 2991
TaiI	ACGT	3 cut(s)	898, 2894, 2976
TauI	GCSGC	4 cut(s)	188, 1968, 2174, 2937
TscAI	CASTG	3 cut(s)	43, 2400, 2515
TseFI	GTSAC	3 cut(s)	2189, 2742, 2848
TseI	GCWGC	5 cut(s)	755, 1223, 1277, 1280, 1766
Tsp45I	GTSAC	3 cut(s)	2189, 2742, 2848
TspGWI	ACGGA	1 cut(s)	969
TspRI	CASTG	3 cut(s)	43, 2400, 2515
Tth111I	GACNNNGTC	1 cut(s)	2510
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	359, 927, 2052
VspI	ATTAAT	1 cut(s)	2502
XagI	CCTNNNNNAGG	2 cut(s)	1760, 2831
XapI	RAATTY	6 cut(s)	1140, 1418, 2040, 2149, 2251, 2284
XbaI	TCTAGA	2 cut(s)	521, 530
XceI	RCATGY	5 cut(s)	164, 451, 512, 1052, 2734
XhoI	CTCGAG	1 cut(s)	1173
XmiI	GTMKAC	1 cut(s)	2843
XmnI	GAANNNNTTC	2 cut(s)	843, 2007
XspI	CTAG	9 cut(s)	218, 369, 429, 522, 531, 2138, 2199, 2541, 2799
Zsp2I	ATGCAT	1 cut(s)	1659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.