Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013588

Physical Location & Seq

Genomic Coordinates Forward (+)

5228134 .. 5229351

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09706.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAAAATGTGGATTGGGAGGAGCTTGACACTCAAGCTTTAGGAGCTATTCGACTATCGCTATCAAATGAAGTTCGGCGCGATGTGATACATGAGAAAACTACTAAGGGGTTAATGGATACCCTGTCAGAGATGTTTGAGAAGCCAAGCGCCGTTGAGCATGTGCACTTATTGAGGAATTTGTTTTCAATGAAGATGGCCAAAGAGGCCCTCAAGACGTTGGTGTTGTTGACCTCCATGCCAGATACTTGGGATGTTACTGTCAACTCTATTTGCAGTTTAGCTGGGAAGAACAAGTTGGTCTACAACGAAGTTCAGGATACCCTGTTGAGTGAGGAAACTAGGAGGAAGAAGAATGATGATGAAGAGTCATCTGCGACTACATCTGCGTTGCTTGTAAGAGGAAGATCTAGTGTAAAGGAGGGGATTGGTTTTCTTCCTACAAAGTCTGTGAAGGGAGGTCTAGTGAGGTCGGTTGGTGCACAAACCTACAGAGTTGCTGGTGTTGGAACAATCAAAATTAAGGTACATGATGGATCGATGAGGAGTTTAGAGAATGTACTCCATGTTCCTAAGTTCGATAGGAATCTGATATCTTTGGGAACTTTAGATTCGAAAGGCCACAAGATTGTTGGTCAAGATGGAAATATGAAAGTTTTGAAGGGGGCACTCGTAGTGATGAAGGGTAAGAAGGTAAATGGTCTCTATCGTTTAGAAGGGAGCTTTGTTCGAGGTGGAACAGTTGGTTCCATTAAGAGTTTTGATCAAGGTGGAAAGATTGGCAATCTTGGTTCCTATTGGCATTCAAGGGAGATAAGCAATAGTAAATGCGAAGGAACGAAATCAGCTTCTAAGAAGGTGAAATTTGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

292

Amino Acids

31.95

Weight (kDa)

9.56

Isoelectric Point (pI)

22.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	4 - 69	7.3e-06	gag-polypeptide of LTR copia-type
Pol_BBD	PF22936	149 - 207	1.2e-13	Pol polyprotein, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09706 FvH4_1g28421 FvH4_1g29881 FvH4_3g13401 FvH4_3g18841 FvH4_3g18841 FvH4_3g36542 FvH4_6g48813
malus_domestica	MD06G1148500.v1.1
pyrus_communis	pycom06g13750 pycom06g13790
rosa_chinensis	RchiOBHm_Chr5g0031651 RchiOBHm_Chr5g0031681 RchiOBHm_Chr5g0031721
rosa_roxburghii	Rroxscaffold_1G00048590 Rroxscaffold_1G00048620 Rroxscaffold_5G00385110
rosa_wichuraiana	Rw5G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	1 cut(s)	81
AclWI	GGATC	1 cut(s)	544
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	178, 863
AfaI	GTAC	2 cut(s)	528, 561
AgsI	TTSAA	3 cut(s)	189, 661, 807
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	6 cut(s)	25, 38, 47, 284, 723, 848
AluI	AGCT	6 cut(s)	25, 38, 47, 284, 723, 848
Alw21I	GWGCWC	2 cut(s)	168, 484
Alw26I	GTCTC	1 cut(s)	707
Alw44I	GTGCAC	2 cut(s)	164, 480
AlwI	GGATC	1 cut(s)	544
AoxI	GGCC	3 cut(s)	198, 207, 619
ApaLI	GTGCAC	2 cut(s)	164, 480
ApoI	RAATTY	2 cut(s)	178, 863
AspLEI	GCGC	2 cut(s)	81, 152
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	871
AsuII	TTCGAA	1 cut(s)	614
BaeGI	GKGCMC	3 cut(s)	168, 484, 670
BalI	TGGCCA	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	168, 484
BccI	CCATC	3 cut(s)	190, 527, 635
BceAI	ACGGC	1 cut(s)	137
BciVI	GTATCC	2 cut(s)	112, 313
BclI	TGATCA	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	3 cut(s)	342, 411, 464
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	1 cut(s)	153
BfuI	GTATCC	2 cut(s)	112, 313
BglI	GCCNNNNNGGC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	748, 793
Bpu14I	TTCGAA	1 cut(s)	614
BpuEI	CTTGAG	2 cut(s)	18, 197
Bsa29I	ATCGAT	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	707
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bse8I	GATNNNNATC	1 cut(s)	585
BseCI	ATCGAT	1 cut(s)	539
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	585
BseRI	GAGGAG	2 cut(s)	35, 559
BseSI	GKGCMC	3 cut(s)	168, 484, 670
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	200, 209, 621
BshVI	ATCGAT	1 cut(s)	539
BsiHKAI	GWGCWC	2 cut(s)	168, 484
BsmAI	GTCTC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	802
BsnI	GGCC	3 cut(s)	200, 209, 621
Bso31I	GGTCTC	1 cut(s)	707
Bsp119I	TTCGAA	1 cut(s)	614
Bsp1286I	GDGCHC	3 cut(s)	168, 484, 670
Bsp143I	GATC	3 cut(s)	407, 536, 763
BspANI	GGCC	3 cut(s)	200, 209, 621
BspDI	ATCGAT	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	748, 793
BspPI	GGATC	1 cut(s)	544
BspT104I	TTCGAA	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	707
BssMI	GATC	3 cut(s)	407, 536, 763
Bst4CI	ACNGT	2 cut(s)	262, 742
Bst6I	CTCTTC	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	614
BstDEI	CTNAG	3 cut(s)	105, 573, 852
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	81, 152
BstKTI	GATC	3 cut(s)	410, 539, 766
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	3 cut(s)	407, 536, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 206
BstNSI	RCATGY	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	490
BstSLI	GKGCMC	3 cut(s)	168, 484, 670
BstUI	CGCG	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	407
BstXI	CCANNNNNNTGG	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	539
BsuI	GTATCC	2 cut(s)	112, 313
BsuRI	GGCC	3 cut(s)	200, 209, 621
BsuTUI	ATCGAT	1 cut(s)	539
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	259
CfoI	GCGC	2 cut(s)	81, 152
Cfr13I	GGNCC	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	539
Csp6I	GTAC	2 cut(s)	527, 560
CviAII	CATG	5 cut(s)	92, 161, 238, 530, 566
CviQI	GTAC	2 cut(s)	527, 560
DdeI	CTNAG	3 cut(s)	105, 573, 852
DpnI	GATC	3 cut(s)	409, 538, 765
DpnII	GATC	3 cut(s)	407, 536, 763
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	594
FaeI	CATG	5 cut(s)	95, 164, 241, 533, 569
FaiI	YATR	6 cut(s)	93, 162, 239, 531, 567, 650
FatI	CATG	5 cut(s)	91, 160, 237, 529, 565
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	303
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	3 cut(s)	342, 411, 464
GlaI	GCGC	2 cut(s)	80, 151
GsaI	CCCAGC	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	200, 209, 621
HhaI	GCGC	2 cut(s)	81, 152
Hin1II	CATG	5 cut(s)	95, 164, 241, 533, 569
Hin6I	GCGC	2 cut(s)	79, 150
HinP1I	GCGC	2 cut(s)	79, 150
HincII	GTYRAC	2 cut(s)	231, 265
HindII	GTYRAC	2 cut(s)	231, 265
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	3 cut(s)	368, 586, 611
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	5 cut(s)	166, 231, 265, 304, 482
Hpy188I	TCNGA	2 cut(s)	130, 591
Hpy188III	TCNNGA	3 cut(s)	214, 317, 638
Hpy8I	GTNNAC	5 cut(s)	166, 231, 265, 304, 482
HpyAV	CCTTC	7 cut(s)	448, 655, 676, 685, 710, 827, 850
HpyCH4III	ACNGT	2 cut(s)	262, 742
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	3 cut(s)	166, 276, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 206
HpyF3I	CTNAG	3 cut(s)	105, 573, 852
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	5 cut(s)	95, 164, 241, 533, 569
HspAI	GCGC	2 cut(s)	79, 150
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	407, 536, 763
LmnI	GCTCC	3 cut(s)	22, 44, 720
LpnPI	CCDG	6 cut(s)	137, 255, 270, 302, 338, 486
MaeI	CTAG	3 cut(s)	342, 411, 464
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	409, 538, 765
MboI	GATC	3 cut(s)	407, 536, 763
MboII	GAAGA	7 cut(s)	205, 301, 361, 364, 377, 417, 428
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	3 cut(s)	168, 484, 670
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	3 cut(s)	178, 519, 863
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	487
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	3 cut(s)	113, 522, 753
Msp20I	TGGCCA	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	802
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	44, 206
NdeII	GATC	3 cut(s)	407, 536, 763
NlaIII	CATG	5 cut(s)	95, 164, 241, 533, 569
NlaIV	GGNNCC	2 cut(s)	748, 793
NspI	RCATGY	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	614
PctI	GAATGC	1 cut(s)	802
PfeI	GAWTC	2 cut(s)	586, 611
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	748, 793
PspPI	GGNCC	1 cut(s)	208
PsrI	GAACNNNNNNTAC	2 cut(s)	552, 584
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	2 cut(s)	528, 561
RsaNI	GTAC	2 cut(s)	527, 560
SaqAI	TTAA	3 cut(s)	113, 522, 753
Sau3AI	GATC	3 cut(s)	407, 536, 763
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	3 cut(s)	168, 484, 670
SfcI	CTRYAG	1 cut(s)	490
SfiI	GGCCNNNNNGGCC	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	33, 212
SmoI	CTYRAG	2 cut(s)	33, 212
Sse9I	AATT	3 cut(s)	178, 519, 863
SspMI	CTAG	3 cut(s)	342, 411, 464
TaaI	ACNGT	2 cut(s)	262, 742
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	5 cut(s)	52, 539, 579, 614, 730
TasI	AATT	3 cut(s)	178, 519, 863
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	2 cut(s)	586, 611
Tru1I	TTAA	3 cut(s)	113, 522, 753
Tru9I	TTAA	3 cut(s)	113, 522, 753
TspDTI	ATGAA	6 cut(s)	17, 84, 206, 378, 665, 695
VneI	GTGCAC	2 cut(s)	164, 480
XapI	RAATTY	2 cut(s)	178, 863
XceI	RCATGY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	3 cut(s)	342, 411, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.