FvH4_6g48813

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013588
Physical Location & Seq
Reverse (-)
36685638 .. 36686546
909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48813.t1

Sequence Viewer

Length: 756 bp
ATGAGTATAGACGTTGAGAAGAGGGTCGATAAGTTCAACGACCACGACTTTAGCCTATGGAGGTCACAGATCGAGGACTACCTAAATATGAAGAGGCTTGCAAAGACTCTGGATGGCAAGCTCCCGAAAGGGATGGAGGAAGAAGATTTTGTCGAGATGGATAGGATGGCCCTTGGAGCAGTTCGACTATCGCTTTCGAATGAAGAAGTTGGGTTAGTTGGTGATATTATCGAGCAACTAGCTTCAGTGGATGTTAAGTTCGACGAACACATCAAGGCGTTGGTGTTGTTGGCTTCTATGCCTCTAGATTGGGATGTGACTGTGAACTCGATTTGTAGTGGAGCTGGGACTACAAAGAAGCTGAAATTTGATGATGTATGTGATGTTCTTCTGAATGAGGAGACGCGAAGACTAAACAACCATGAAGATCCTTCAAGTTCTGCATTATCTATGGAGAATAGAGGTAGAACATTCAACAAGAACTTAAACAACAATCGTGGGAGGTCCAAGTCTAGGGCACTAGGAAAAAGCCGAAGTATGTCCAAAGCAAGAAAGTGGTCTGATGGATGTTGGCATTGTGGGAAGCCCGTACATGTCAAGAAAGATTGTAACCAGTGGAAGAGTGATATGAAGATGGCAAACACAACTGAGTTTGATTCAGATGCACTAGTACTGAGCGTGACTGAAGCACCATTGGATTCATGGATCGTAGACTCTGGAGCATCTTTTCACTCAACTTCACAACAAGGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

252

Amino Acids

28.22

Weight (kDa)

5.74

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 74 - 140 2.6e-06 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 711
AccII CGCG 1 cut(s) 406
AclWI GGATC 2 cut(s) 422, 713
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 2 cut(s) 228, 705
AfaI GTAC 2 cut(s) 591, 672
AfiI CCNNNNNNNGG 1 cut(s) 513
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 3 cut(s) 37, 435, 475
AhlI ACTAGT 1 cut(s) 667
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 4 cut(s) 121, 242, 344, 361
AluI AGCT 4 cut(s) 121, 242, 344, 361
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 2 cut(s) 422, 713
AoxI GGCC 2 cut(s) 168, 749
ApoI RAATTY 1 cut(s) 365
AspS9I GGNCC 3 cut(s) 169, 504, 749
AsuHPI GGTGA 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 504
BaeGI GKGCMC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 415
BccI CCATC 6 cut(s) 107, 127, 151, 160, 557, 628
BcoDI GTCTC 1 cut(s) 395
BcuI ACTAGT 1 cut(s) 667
BfaI CTAG 5 cut(s) 239, 305, 513, 521, 668
BmcAI AGTACT 1 cut(s) 672
Bme18I GGWCC 1 cut(s) 504
BmgT120I GGNCC 3 cut(s) 169, 504, 749
BmsI GCATC 2 cut(s) 652, 731
BpiI GAAGAC 1 cut(s) 415
BpmI CTGGAG 1 cut(s) 738
Bpu14I TTCGAA 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 1 cut(s) 613
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 6 cut(s) 118, 138, 171, 256, 319, 572
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMII CTCAG 2 cut(s) 639, 665
BseNI ACTGG 1 cut(s) 613
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 520
BseYI CCCAGC 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 406
BshFI GGCC 2 cut(s) 170, 751
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 1 cut(s) 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 2 cut(s) 170, 751
Bsp119I TTCGAA 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 3 cut(s) 69, 427, 705
BspANI GGCC 2 cut(s) 170, 751
BspCNI CTCAG 2 cut(s) 640, 666
BspFNI CGCG 1 cut(s) 406
BspPI GGATC 2 cut(s) 422, 713
BspT104I TTCGAA 1 cut(s) 197
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 3 cut(s) 69, 427, 705
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 3 cut(s) 14, 86, 614
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 99, 119
BstDEI CTNAG 2 cut(s) 648, 674
BstF5I GGATG 6 cut(s) 118, 138, 171, 256, 319, 572
BstFNI CGCG 1 cut(s) 406
BstKTI GATC 3 cut(s) 72, 430, 708
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 3 cut(s) 69, 427, 705
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 596
BstSLI GKGCMC 1 cut(s) 520
BstUI CGCG 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 2 cut(s) 170, 751
BtsCI GGATG 6 cut(s) 118, 138, 171, 256, 319, 572
BtsIMutI CAGTG 2 cut(s) 252, 620
Cac8I GCNNGC 2 cut(s) 99, 119
Cfr13I GGNCC 3 cut(s) 169, 504, 749
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 590, 671
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 4 cut(s) 422, 593, 702, 753
CviQI GTAC 2 cut(s) 590, 671
DdeI CTNAG 2 cut(s) 648, 674
DpnI GATC 3 cut(s) 71, 429, 707
DpnII GATC 3 cut(s) 69, 427, 705
Eam1104I CTCTTC 3 cut(s) 14, 86, 614
EarI CTCTTC 3 cut(s) 14, 86, 614
Eco130I CCWWGG 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 504
Eco57I CTGAAG 2 cut(s) 228, 705
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 4 cut(s) 425, 596, 705, 756
FaqI GGGAC 1 cut(s) 361
FatI CATG 4 cut(s) 421, 592, 701, 752
FblI GTMKAC 1 cut(s) 711
FokI GGATG 6 cut(s) 125, 145, 178, 263, 326, 579
FspBI CTAG 5 cut(s) 239, 305, 513, 521, 668
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 2 cut(s) 170, 751
HgaI GACGC 1 cut(s) 412
Hin1II CATG 4 cut(s) 425, 596, 705, 756
HinfI GANTC 4 cut(s) 106, 656, 698, 713
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 325, 712
Hpy188I TCNGA 3 cut(s) 393, 562, 661
Hpy188III TCNNGA 6 cut(s) 110, 124, 154, 305, 598, 717
Hpy8I GTNNAC 2 cut(s) 325, 712
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 101, 443, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 648, 674
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 4 cut(s) 425, 596, 705, 756
Kzo9I GATC 3 cut(s) 69, 427, 705
LmnI GCTCC 4 cut(s) 126, 176, 341, 719
LpnPI CCDG 4 cut(s) 95, 330, 626, 702
LweI GCATC 2 cut(s) 652, 731
MaeI CTAG 5 cut(s) 239, 305, 513, 521, 668
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 4 cut(s) 63, 316, 608, 679
MalI GATC 3 cut(s) 71, 429, 707
MboI GATC 3 cut(s) 69, 427, 705
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 1 cut(s) 365
MlyI GAGTC 2 cut(s) 100, 707
MnlI CCTC 9 cut(s) 15, 54, 67, 87, 130, 312, 391, 455, 495
MseI TTAA 2 cut(s) 255, 485
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 3 cut(s) 69, 427, 705
NlaIII CATG 4 cut(s) 425, 596, 705, 756
NmuCI GTSAC 3 cut(s) 63, 316, 679
NspI RCATGY 1 cut(s) 596
NspV TTCGAA 1 cut(s) 197
PciI ACATGT 1 cut(s) 592
PfeI GAWTC 2 cut(s) 656, 698
PleI GAGTC 2 cut(s) 100, 707
PpsI GAGTC 2 cut(s) 100, 707
PscI ACATGT 1 cut(s) 592
PspFI CCCAGC 1 cut(s) 344
PspPI GGNCC 3 cut(s) 169, 504, 749
PsrI GAACNNNNNNTAC 2 cut(s) 369, 401
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 2 cut(s) 591, 672
RsaNI GTAC 2 cut(s) 590, 671
SaqAI TTAA 2 cut(s) 255, 485
Sau3AI GATC 3 cut(s) 69, 427, 705
Sau96I GGNCC 3 cut(s) 169, 504, 749
ScaI AGTACT 1 cut(s) 672
SchI GAGTC 2 cut(s) 100, 707
SduI GDGCHC 1 cut(s) 520
SetI ASST 9 cut(s) 15, 65, 84, 123, 244, 346, 363, 466, 506
SfaNI GCATC 2 cut(s) 652, 731
SfuI TTCGAA 1 cut(s) 197
SinI GGWCC 1 cut(s) 504
SpeI ACTAGT 1 cut(s) 667
Sse9I AATT 1 cut(s) 365
SspMI CTAG 5 cut(s) 239, 305, 513, 521, 668
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 15
TaqI TCGA 8 cut(s) 27, 72, 153, 184, 197, 231, 261, 329
TasI AATT 1 cut(s) 365
TatI WGTACW 1 cut(s) 670
TfiI GAWTC 2 cut(s) 656, 698
Tru1I TTAA 2 cut(s) 255, 485
Tru9I TTAA 2 cut(s) 255, 485
TscAI CASTG 2 cut(s) 252, 620
TseFI GTSAC 3 cut(s) 63, 316, 679
Tsp45I GTSAC 3 cut(s) 63, 316, 679
TspDTI ATGAA 5 cut(s) 104, 216, 438, 644, 690
TspRI CASTG 2 cut(s) 252, 620
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 304
XceI RCATGY 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 711
XspI CTAG 5 cut(s) 239, 305, 513, 521, 668
ZrmI AGTACT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.