pycom06g13790

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013588
Physical Location & Seq
Forward (+)
18685417 .. 18686016
600 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13790.1

Sequence Viewer

Length: 600 bp
ATGGGAGAGAGAACGAGAGGCAAAGCAAATATGGAATCAAGCACCAGCGGCATAAAAATCGAGGCCGATCTCGGAAAATCCGGCTTCGGAAAGTGGGGAGACGCATGCTCGCACTGCGGGAAGCTGGATCACGCCCACAAAGATTGCAGGCTGCTGAAGAACAATGTCGGTGCCGCAGACACCATCGAAGTCATCAACGACGCTCTGTTTCTCAGCGTCGACAGCCCCCTTGAATCCTGGATCTTCAGCACCGCCGCCGAGTTCCACTGCTCGCCGCACAAGGGGATTTTCGAGAAGTACACCGCCGGAAACTACGGCAAGGCCTACTTCGGCCTGAACAACAGTTCGCTGGACATTGTCGGGAAAGGCGACGTTCGGGTCAAGTTGCCGGGCGGGGCGAGGTGGATCATCCACAATGTGAAGCACATTCCGGGTTTGGTGCGGAATTTGATTTCGGTGGGGCAGTTGGCTAACGAGGGTTATGCTCCGCAAATGTCTAGCGGGAGCTGGAAGGTACTCAAAGCTGGAGAATTGCTTTTCACTTATGAATTTGTGCTTATTCCGAACATTATCACGTTTGTTACGTCCTCCAGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

200

Amino Acids

21.62

Weight (kDa)

8.31

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 80 - 161 2.7e-16 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 219
AclWI GGATC 3 cut(s) 135, 248, 413
AcsI RAATTY 2 cut(s) 445, 548
AcuI CTGAAG 2 cut(s) 176, 229
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 2 cut(s) 299, 516
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 3 cut(s) 124, 507, 524
AluI AGCT 3 cut(s) 124, 507, 524
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 3 cut(s) 135, 248, 413
AoxI GGCC 3 cut(s) 63, 321, 331
ApeKI GCWGC 1 cut(s) 151
ApoI RAATTY 2 cut(s) 445, 548
AsuC2I CCSGG 2 cut(s) 390, 432
BanI GGYRCC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 138
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 4 cut(s) 40, 74, 464, 498
BciT130I CCWGG 1 cut(s) 238
BcnI CCSGG 2 cut(s) 390, 432
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 498
BisI GCNGC 5 cut(s) 49, 152, 174, 255, 275
BlsI GCNGC 5 cut(s) 50, 153, 175, 256, 276
Bme1390I CCNGG 3 cut(s) 238, 390, 432
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 3 cut(s) 238, 390, 432
BpmI CTGGAG 2 cut(s) 546, 574
BpuMI CCSGG 2 cut(s) 390, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 408
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 138
BshFI GGCC 3 cut(s) 65, 323, 333
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 4 cut(s) 81, 306, 389, 431
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
BsnI GGCC 3 cut(s) 65, 323, 333
Bsp143I GATC 4 cut(s) 67, 127, 240, 405
BspANI GGCC 3 cut(s) 65, 323, 333
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 3 cut(s) 135, 248, 413
BspT107I GGYRCC 1 cut(s) 170
BssMI GATC 4 cut(s) 67, 127, 240, 405
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 344
BstC8I GCNNGC 4 cut(s) 106, 110, 149, 272
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 408
BstKTI GATC 4 cut(s) 70, 130, 243, 408
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 4 cut(s) 67, 127, 240, 405
BstMWI GCNNNNNNNGC 3 cut(s) 48, 114, 222
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 3 cut(s) 236, 388, 430
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 3 cut(s) 65, 323, 333
BtsCI GGATG 1 cut(s) 408
BtsI GCAGTG 2 cut(s) 112, 265
BtsIMutI CAGTG 2 cut(s) 112, 265
Cac8I GCNNGC 4 cut(s) 106, 110, 149, 272
CseI GACGC 3 cut(s) 110, 205, 209
Csp6I GTAC 2 cut(s) 298, 515
CspCI CAANNNNNGTGG 2 cut(s) 125, 160
CviAII CATG 1 cut(s) 105
CviQI GTAC 2 cut(s) 298, 515
DdeI CTNAG 1 cut(s) 212
DpnI GATC 4 cut(s) 69, 129, 242, 407
DpnII GATC 4 cut(s) 67, 127, 240, 405
DraIII CACNNNGTG 1 cut(s) 418
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eco147I AGGCCT 1 cut(s) 323
Eco57I CTGAAG 2 cut(s) 176, 229
EcoRII CCWGG 1 cut(s) 236
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 1 cut(s) 108
FaiI YATR 5 cut(s) 32, 53, 106, 483, 546
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 1 cut(s) 104
FauI CCCGC 3 cut(s) 110, 386, 494
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 5 cut(s) 49, 152, 174, 255, 275
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 5 cut(s) 49, 152, 174, 255, 275
FspBI CTAG 1 cut(s) 498
GluI GCNGC 5 cut(s) 49, 152, 174, 255, 275
GsuI CTGGAG 2 cut(s) 546, 574
HaeIII GGCC 3 cut(s) 65, 323, 333
HapII CCGG 4 cut(s) 81, 306, 389, 431
HgaI GACGC 3 cut(s) 110, 205, 209
Hin1II CATG 1 cut(s) 108
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 2 cut(s) 35, 233
HpaII CCGG 4 cut(s) 81, 306, 389, 431
Hpy166II GTNNAC 2 cut(s) 220, 300
Hpy188I TCNGA 3 cut(s) 74, 89, 564
Hpy188III TCNNGA 3 cut(s) 292, 361, 591
Hpy8I GTNNAC 2 cut(s) 220, 300
Hpy99I CGWCG 3 cut(s) 203, 221, 374
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 3 cut(s) 372, 575, 584
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 114, 222
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 3 cut(s) 372, 575, 584
Hsp92II CATG 1 cut(s) 108
Kzo9I GATC 4 cut(s) 67, 127, 240, 405
LmnI GCTCC 2 cut(s) 490, 504
Lsp1109I GCAGC 1 cut(s) 138
MaeI CTAG 1 cut(s) 498
MaeII ACGT 3 cut(s) 372, 575, 584
MaeIII GTNAC 1 cut(s) 580
MalI GATC 4 cut(s) 69, 129, 242, 407
MboI GATC 4 cut(s) 67, 127, 240, 405
MboII GAAGA 2 cut(s) 169, 235
MflI RGATCY 1 cut(s) 240
MluCI AATT 3 cut(s) 445, 530, 548
MnlI CCTC 5 cut(s) 11, 55, 393, 469, 598
MspA1I CMGCKG 1 cut(s) 48
MspI CCGG 4 cut(s) 81, 306, 389, 431
MspR9I CCNGG 3 cut(s) 238, 390, 432
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 48, 114, 222
NciI CCSGG 2 cut(s) 390, 432
NdeII GATC 4 cut(s) 67, 127, 240, 405
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 172
NmeAIII GCCGAG 1 cut(s) 283
NspI RCATGY 1 cut(s) 108
PaeI GCATGC 1 cut(s) 108
PceI AGGCCT 1 cut(s) 323
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 581
PfeI GAWTC 2 cut(s) 35, 233
PflFI GACNNNGTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 236
PkrI GCNGC 5 cut(s) 50, 153, 175, 256, 276
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 240
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 2 cut(s) 299, 516
RsaNI GTAC 2 cut(s) 298, 515
SalI GTCGAC 1 cut(s) 218
SatI GCNGC 5 cut(s) 49, 152, 174, 255, 275
Sau3AI GATC 4 cut(s) 67, 127, 240, 405
ScrFI CCNGG 3 cut(s) 238, 390, 432
SetI ASST 8 cut(s) 126, 375, 404, 509, 516, 526, 578, 587
SphI GCATGC 1 cut(s) 108
Sse9I AATT 3 cut(s) 445, 530, 548
SseBI AGGCCT 1 cut(s) 323
SspMI CTAG 1 cut(s) 498
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 236, 388, 430
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 3 cut(s) 375, 578, 587
TaqI TCGA 4 cut(s) 60, 186, 219, 291
TasI AATT 3 cut(s) 445, 530, 548
TatI WGTACW 1 cut(s) 297
TauI GCSGC 4 cut(s) 51, 176, 257, 277
TfiI GAWTC 2 cut(s) 35, 233
TscAI CASTG 2 cut(s) 119, 272
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 561
TspRI CASTG 2 cut(s) 119, 272
Tth111I GACNNNGTC 1 cut(s) 356
XapI RAATTY 2 cut(s) 445, 548
XceI RCATGY 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.