FvH4_3g18841

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013588
Physical Location & Seq
Reverse (-)
12100039 .. 12101585
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18841.t1

Sequence Viewer

Length: 519 bp
ATGATGGAAGCCGCAGGGAATCCTCCGAAGCCTGGAAACAAGAAAAAACGTAACAAGAAGAAAGGTGGTAAAGCTTCAAACAACCAATTTGGGGCAACTAATCCCACGCAAGCAAACCAAGATGCTCCAGTTCAGAGCGTGGATAGTCCATTGGAGACATGGATTTTTAGCACTGCATCATCCTATCATGTTACAGCAGATCGGGAGATTATGGAGAACTATACTAGTGGCAATTTCGGCAAGGTCTACCTAGCTACTGGTAATTCCATGGATGTTGTGGGTAAGGGTGATGTTCGCATCAAACTGTCCAGTAATGCCACATGGATTCTACGTGATGTGAAACACGTTCCGGGTTATGCGTGGAATCAAATTTCTGTGGGGGTGTTGTGTGAAAAAGGCTATGGGATGACATACTCTCATGTCGGTTGGAAGATTTCGAAAGGAGATTTTGCTTTTACAGTCCCGCTTGATCCAAATCCTCCTATGCGTATCACTTTTCTATCCGCGTCACCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

173

Amino Acids

18.73

Weight (kDa)

9.52

Isoelectric Point (pI)

19.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 54 - 134 3.9e-18 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 506
AciI CCGC 3 cut(s) 12, 464, 504
AclWI GGATC 1 cut(s) 464
AcsI RAATTY 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 32, 91
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 1 cut(s) 78
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 2 cut(s) 74, 254
AluI AGCT 2 cut(s) 74, 254
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 369
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 299, 501
AsuII TTCGAA 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 2 cut(s) 225, 251
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 33, 351
BmrFI CCNGG 2 cut(s) 33, 351
BmsI GCATC 3 cut(s) 112, 185, 306
BpmI CTGGAG 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 91
Bse1I ACTGG 3 cut(s) 128, 262, 309
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 3 cut(s) 179, 277, 411
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 32, 91
BseNI ACTGG 3 cut(s) 128, 262, 309
Bsh1236I CGCG 1 cut(s) 506
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 32, 91
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 437
Bsp143I GATC 2 cut(s) 199, 469
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 3 cut(s) 12, 464, 504
BspFNI CGCG 1 cut(s) 506
BspPI GGATC 1 cut(s) 464
BspT104I TTCGAA 1 cut(s) 437
BsrI ACTGG 3 cut(s) 128, 262, 309
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 2 cut(s) 199, 469
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 306, 460
BstBAI YACGTR 1 cut(s) 332
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 179, 277, 411
BstFNI CGCG 1 cut(s) 506
BstKTI GATC 2 cut(s) 202, 472
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 199, 469
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 31, 349
BstUI CGCG 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 179, 277, 411
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 111
CseI GACGC 1 cut(s) 495
CviAII CATG 5 cut(s) 159, 188, 268, 321, 419
CviJI RGCY 5 cut(s) 11, 31, 74, 254, 399
CviKI_1 RGCY 5 cut(s) 11, 31, 74, 254, 399
DpnI GATC 2 cut(s) 201, 471
DpnII GATC 2 cut(s) 199, 469
Eco130I CCWWGG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 5 cut(s) 162, 191, 271, 324, 422
FaqI GGGAC 1 cut(s) 446
FatI CATG 5 cut(s) 158, 187, 267, 320, 418
FauI CCCGC 1 cut(s) 471
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 3 cut(s) 166, 284, 418
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 225, 251
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 111
HapII CCGG 1 cut(s) 350
HgaI GACGC 1 cut(s) 495
Hin1II CATG 5 cut(s) 162, 191, 271, 324, 422
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 3 cut(s) 19, 325, 364
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 299, 501
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 27, 135
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 306, 460
HpyCH4IV ACGT 3 cut(s) 49, 331, 345
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpySE526I ACGT 3 cut(s) 49, 331, 345
Hsp92II CATG 5 cut(s) 162, 191, 271, 324, 422
Kzo9I GATC 2 cut(s) 199, 469
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 18, 45, 141, 243, 322, 363
LweI GCATC 3 cut(s) 112, 185, 306
MaeI CTAG 2 cut(s) 225, 251
MaeII ACGT 3 cut(s) 49, 331, 345
MaeIII GTNAC 3 cut(s) 50, 190, 507
MalI GATC 2 cut(s) 201, 471
MboI GATC 2 cut(s) 199, 469
MboII GAAGA 2 cut(s) 70, 442
MluCI AATT 4 cut(s) 86, 232, 262, 369
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 2 cut(s) 33, 489
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 2 cut(s) 33, 351
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 1 cut(s) 237
NciI CCSGG 1 cut(s) 351
NcoI CCATGG 1 cut(s) 267
NdeII GATC 2 cut(s) 199, 469
NlaIII CATG 5 cut(s) 162, 191, 271, 324, 422
NmuCI GTSAC 1 cut(s) 507
NspV TTCGAA 1 cut(s) 437
PfeI GAWTC 3 cut(s) 19, 325, 364
PkrI GCNGC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 199, 469
ScrFI CCNGG 2 cut(s) 33, 351
SetI ASST 8 cut(s) 52, 67, 76, 246, 252, 256, 334, 348
SfaNI GCATC 3 cut(s) 112, 185, 306
SfuI TTCGAA 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 4 cut(s) 86, 232, 262, 369
SsiI CCGC 3 cut(s) 12, 464, 504
SspMI CTAG 2 cut(s) 225, 251
StyD4I CCNGG 2 cut(s) 31, 349
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 306, 460
TaiI ACGT 3 cut(s) 52, 334, 348
TaqI TCGA 1 cut(s) 437
TasI AATT 4 cut(s) 86, 232, 262, 369
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 3 cut(s) 19, 325, 364
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 507
Tsp45I GTSAC 1 cut(s) 507
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 369
XcmI CCANNNNNNNNNTGG 2 cut(s) 156, 274
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 225, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.