pycom06g13750

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013588
Physical Location & Seq
Forward (+)
18626139 .. 18626579
441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13750.1

Sequence Viewer

Length: 441 bp
ATGAATTCAGACGCATGCAAACACTGCGGGAGGCTCGATCACGCCCAGAAAGAGTGCAGGCTTCTGAAGAACAATGTGGGTGCTGCAGACACAATCGAAGTCATCAACGACGCTCTGTTTCTCACCGTCGACAGCCCGCTGGAGTCCTGGATCTTCAGCACCGGCGCGCAGTTCCACTGCACCCCGCACAAGGGGATTTTGGAGAAGTATACCGCCGGCAACTATGGCAAGGCCTACTCCCTCACGACGGATCCTGGGCTGCACATTGTTGGAAAAGGCGACGTCCGGATCAAGTTGCCGGGCGGGGCGAGTTGGATCATCCACAATGTGAGGCACATTCCGGGTTTGGTGCGGAATTTGATTTCGGTTGGGCAGTTGGATAAGGAGGGTTATGCTCTGCAAATGTCTAGTGGGAGCTGGAAGGTACTGAAGGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

147

Amino Acids

15.85

Weight (kDa)

8.69

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 50 - 131 1.2e-16 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 285
AccI GTMKAC 2 cut(s) 129, 209
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 6 cut(s) 27, 137, 185, 213, 303, 352
AclWI GGATC 5 cut(s) 158, 245, 258, 296, 323
AcsI RAATTY 2 cut(s) 4, 355
AcuI CTGAAG 2 cut(s) 86, 139
AcyI GRCGYC 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 328
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 3 cut(s) 190, 191, 247
AjnI CCWGG 2 cut(s) 146, 253
AluBI AGCT 1 cut(s) 417
AluI AGCT 1 cut(s) 417
AlwI GGATC 5 cut(s) 158, 245, 258, 296, 323
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 83, 259
ApoI RAATTY 2 cut(s) 4, 355
AspLEI GCGC 2 cut(s) 167, 169
AsuC2I CCSGG 2 cut(s) 300, 342
AsuHPI GGTGA 1 cut(s) 115
BamHI GGATCC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 70, 246
BciT130I CCWGG 2 cut(s) 148, 255
BcnI CCSGG 2 cut(s) 300, 342
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 2 cut(s) 84, 260
BlsI GCNGC 2 cut(s) 85, 261
Bme1390I CCNGG 4 cut(s) 148, 255, 300, 342
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 4 cut(s) 148, 255, 300, 342
BpmI CTGGAG 1 cut(s) 161
BpuMI CCSGG 2 cut(s) 300, 342
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 191, 247
Bse118I RCCGGY 2 cut(s) 161, 215
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 2 cut(s) 148, 255
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 3 cut(s) 190, 191, 247
BsePI GCGCGC 1 cut(s) 165
BseXI GCAGC 2 cut(s) 70, 246
BsgI GTGCAG 3 cut(s) 76, 163, 245
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 233
BsiSI CCGG 5 cut(s) 162, 216, 286, 299, 341
BslI CCNNNNNNNGG 3 cut(s) 190, 191, 247
BsnI GGCC 1 cut(s) 233
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 5 cut(s) 37, 150, 250, 288, 315
BspACI CCGC 6 cut(s) 27, 137, 185, 213, 303, 352
BspANI GGCC 1 cut(s) 233
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 5 cut(s) 158, 245, 258, 296, 323
BsrFI RCCGGY 2 cut(s) 161, 215
BssAI RCCGGY 2 cut(s) 161, 215
BssECI CCNNGG 1 cut(s) 254
BssHII GCGCGC 1 cut(s) 165
BssMI GATC 5 cut(s) 37, 150, 250, 288, 315
BssNAI GTATAC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 148, 255
Bst4CI ACNGT 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 24
BstC8I GCNNGC 5 cut(s) 16, 59, 137, 167, 217
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 2 cut(s) 167, 169
BstKTI GATC 5 cut(s) 40, 153, 253, 291, 318
BstMBI GATC 5 cut(s) 37, 150, 250, 288, 315
BstMWI GCNNNNNNNGC 2 cut(s) 24, 225
BstNI CCWGG 2 cut(s) 148, 255
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 4 cut(s) 146, 253, 298, 340
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 70, 246
BstX2I RGATCY 2 cut(s) 150, 250
BstYI RGATCY 2 cut(s) 150, 250
BstZ17I GTATAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 318
BtsI GCAGTG 2 cut(s) 22, 175
BtsIMutI CAGTG 2 cut(s) 22, 175
Cac8I GCNNGC 5 cut(s) 16, 59, 137, 167, 217
CfoI GCGC 2 cut(s) 167, 169
Cfr10I RCCGGY 2 cut(s) 161, 215
CseI GACGC 2 cut(s) 20, 119
Csp6I GTAC 1 cut(s) 425
CviAII CATG 1 cut(s) 15
CviJI RGCY 6 cut(s) 34, 61, 135, 233, 259, 417
CviKI_1 RGCY 6 cut(s) 34, 61, 135, 233, 259, 417
CviQI GTAC 1 cut(s) 425
DpnI GATC 5 cut(s) 39, 152, 252, 290, 317
DpnII GATC 5 cut(s) 37, 150, 250, 288, 315
DraIII CACNNNGTG 1 cut(s) 328
Eco147I AGGCCT 1 cut(s) 233
Eco57I CTGAAG 2 cut(s) 86, 139
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 146, 253
FaeI CATG 1 cut(s) 18
FaiI YATR 4 cut(s) 16, 210, 225, 393
FatI CATG 1 cut(s) 14
FauI CCCGC 4 cut(s) 20, 144, 192, 296
FblI GTMKAC 2 cut(s) 129, 209
Fnu4HI GCNGC 2 cut(s) 84, 260
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 84, 260
FspBI CTAG 1 cut(s) 408
GlaI GCGC 2 cut(s) 166, 168
GluI GCNGC 2 cut(s) 84, 260
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 233
HapII CCGG 5 cut(s) 162, 216, 286, 299, 341
HgaI GACGC 2 cut(s) 20, 119
HhaI GCGC 2 cut(s) 167, 169
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 2 cut(s) 165, 167
HinP1I GCGC 2 cut(s) 165, 167
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 143
HpaII CCGG 5 cut(s) 162, 216, 286, 299, 341
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 130, 210
Hpy188I TCNGA 2 cut(s) 10, 66
Hpy188III TCNNGA 2 cut(s) 244, 286
Hpy8I GTNNAC 2 cut(s) 130, 210
Hpy99I CGWCG 4 cut(s) 113, 131, 250, 284
HpyAV CCTTC 2 cut(s) 415, 424
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 6 cut(s) 18, 57, 86, 180, 262, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 225
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 2 cut(s) 165, 167
Kpn2I TCCGGA 1 cut(s) 285
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 5 cut(s) 37, 150, 250, 288, 315
LmnI GCTCC 1 cut(s) 414
Lsp1109I GCAGC 2 cut(s) 70, 246
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 282
MalI GATC 5 cut(s) 39, 152, 252, 290, 317
MboI GATC 5 cut(s) 37, 150, 250, 288, 315
MboII GAAGA 2 cut(s) 79, 145
MflI RGATCY 2 cut(s) 150, 250
MluCI AATT 2 cut(s) 4, 355
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 3 cut(s) 250, 293, 357
MnlI CCTC 4 cut(s) 24, 251, 324, 379
MroI TCCGGA 1 cut(s) 285
MroNI GCCGGC 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 5 cut(s) 162, 216, 286, 299, 341
MspR9I CCNGG 4 cut(s) 148, 255, 300, 342
MvaI CCWGG 2 cut(s) 148, 255
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 24, 225
NaeI GCCGGC 1 cut(s) 217
NciI CCSGG 2 cut(s) 300, 342
NdeII GATC 5 cut(s) 37, 150, 250, 288, 315
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 252
NspI RCATGY 1 cut(s) 18
PaeI GCATGC 1 cut(s) 18
PauI GCGCGC 1 cut(s) 165
PceI AGGCCT 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 146
PkrI GCNGC 2 cut(s) 85, 261
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 146, 253
PspGI CCWGG 2 cut(s) 146, 253
PspN4I GGNNCC 1 cut(s) 252
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 2 cut(s) 150, 250
PteI GCGCGC 1 cut(s) 165
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SalI GTCGAC 1 cut(s) 128
SatI GCNGC 2 cut(s) 84, 260
Sau3AI GATC 5 cut(s) 37, 150, 250, 288, 315
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 4 cut(s) 148, 255, 300, 342
SetI ASST 3 cut(s) 285, 419, 426
SfcI CTRYAG 1 cut(s) 84
SgrAI CRCCGGYG 1 cut(s) 161
SphI GCATGC 1 cut(s) 18
Sse9I AATT 2 cut(s) 4, 355
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 6 cut(s) 27, 137, 185, 213, 303, 352
SspMI CTAG 1 cut(s) 408
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 4 cut(s) 146, 253, 298, 340
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 36, 96, 129
TasI AATT 2 cut(s) 4, 355
TscAI CASTG 2 cut(s) 29, 182
TseI GCWGC 2 cut(s) 83, 259
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 2 cut(s) 29, 182
XapI RAATTY 2 cut(s) 4, 355
XceI RCATGY 1 cut(s) 18
XmiI GTMKAC 2 cut(s) 129, 209
XspI CTAG 1 cut(s) 408
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.