FvH4_1g29881

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013588
Physical Location & Seq
Forward (+)
23580732 .. 23582462
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29881.t1

Sequence Viewer

Length: 1224 bp
ATGAAGAGGCTTGCAAAGACTCTGGATGGCAAGCTCCTGAAAGGGATGGAGGAAGAAGATTTTGTCGAAATGGATAGGATGGCCCTTGGAGCAGTTCGACTATCGCTTTCGAATGAAGTACGGCGATTCGTTATCAAGGAGACTACGTTGAAGGGAATGATGGATAGTTTGTCCAACATGTATGAGAAGCCAAATGTCGTTCAACAATTATACTTGATGAGAAAGCTGTTCACTCTGAAGTTGGGGAAGGGTATATCTGTTCGCCAACAAGTTGGGTTAGTTGGTGATATTATCGAGCAACTAGCTTCAGTGGATGTTAAGTTCGACGAACACATCAAGGCGTTGGTGCTGCTGACTTCTATGCCTCTAGATTGGGATGTGACTGTGAACTCGATTTGTAGTGGAGCTGGGACTACAAAGAAGCTGAAATTTGATGATGTGTGTGATGTTCTTCTGAATGAGGAGACGCGAAGACTAAACAACCATGAAGATCCTTCAAGTTCTGCGTTATCTATGGAGAATAGAGGTAGAACATTCAACAAGAACTCAAACAACAATCGTGGGAGGTCCAAGTCTAGGGCACCAGGAAAAAGCCGAAGTATGTCCAAAGCAGGAAAGTGGTCCGATGGATGTTGGCATTGTGGGAAGCCCGGACATGTCAAGAAAGATTGTAACCAGTGGAAGAGTGATATGAAGATGGCAAACACAGCTGAGTTTGATTCAGATGCACTAGTACTGAGCGTGACTGAAGCACCATTGGAGTCATGGATCGTAGACTCTGGAGCATCTTTTCACTCAACTTCACAACAAGGGGCCATGATGAATTACCGACCTGGTAATTTTGGCAAAGTGTTTCTTGCTAATGGTGCACCCTTGGACATTGTGGGAAGGGGTGATGTGAAGATCTCGCTCGGGAATGGTGGAACATGGACCTTGACTAATGTTAGGCACATACCGCGGTTAAGGAAAAATTTGATCTCTGTGGGTCAGTTGGATGACGAAGGATGTCGTACCATTTTTGAGAATGGTAAATGGAAGGTATGTAAGGGAGCTATGGTGTTAGCTCGTGGAATCAAGACAGGATCACTCTATACGACCTTAAACATTATTGTTGTTGTTAAGAACAATGAAGGCGTTGCGATCGTTGAGAAAAATGAGGATGCAAACTTATGGCATCATAGACTTGGGCACATCAGCGAGAAAGGATTGCTAGAAACGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

408

Amino Acids

45.2

Weight (kDa)

9.22

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 16 - 161 9.2e-18 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 256 - 336 5.9e-23 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 378 - 403 4.8e-06 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 580
AccI GTMKAC 1 cut(s) 774
AccII CGCG 2 cut(s) 469, 958
AciI CCGC 2 cut(s) 956, 958
AclI AACGTT 1 cut(s) 1217
AclWI GGATC 3 cut(s) 485, 776, 1090
AcsI RAATTY 2 cut(s) 428, 970
AcuI CTGAAG 3 cut(s) 257, 291, 768
AfaI GTAC 3 cut(s) 120, 735, 1012
AfiI CCNNNNNNNGG 1 cut(s) 576
AflIII ACRYGT 2 cut(s) 177, 655
AgsI TTSAA 4 cut(s) 151, 203, 498, 538
AhlI ACTAGT 1 cut(s) 730
AjnI CCWGG 2 cut(s) 583, 832
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 8 cut(s) 34, 226, 305, 407, 424, 710, 1052, 1064
AluI AGCT 8 cut(s) 34, 226, 305, 407, 424, 710, 1052, 1064
Alw21I GWGCWC 1 cut(s) 871
Alw26I GTCTC 2 cut(s) 134, 458
Alw44I GTGCAC 1 cut(s) 867
AlwI GGATC 3 cut(s) 485, 776, 1090
Ama87I CYCGRG 1 cut(s) 911
AoxI GGCC 2 cut(s) 81, 813
ApaLI GTGCAC 1 cut(s) 867
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 2 cut(s) 428, 970
AspS9I GGNCC 5 cut(s) 82, 567, 621, 813, 930
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 2 cut(s) 296, 905
AsuII TTCGAA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 911
AvaII GGWCC 3 cut(s) 567, 621, 930
BaeGI GKGCMC 3 cut(s) 583, 871, 1191
BanI GGYRCC 1 cut(s) 580
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 871
BbvI GCAGC 1 cut(s) 336
BccI CCATC 6 cut(s) 20, 40, 73, 154, 620, 691
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 585, 834
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 2 cut(s) 134, 458
BcuI ACTAGT 1 cut(s) 730
BfaI CTAG 5 cut(s) 302, 368, 576, 731, 1211
BglII AGATCT 1 cut(s) 903
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
BmcAI AGTACT 1 cut(s) 735
Bme1390I CCNGG 3 cut(s) 585, 651, 834
Bme18I GGWCC 3 cut(s) 567, 621, 930
BmeT110I CYCGRG 1 cut(s) 911
BmgT120I GGNCC 5 cut(s) 82, 567, 621, 813, 930
BmiI GGNNCC 2 cut(s) 582, 814
BmrFI CCNGG 3 cut(s) 585, 651, 834
BmsI GCATC 4 cut(s) 715, 794, 1150, 1183
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 801
Bpu14I TTCGAA 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 651
BsaJI CCNNGG 3 cut(s) 85, 873, 956
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 1041, 1071
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse1I ACTGG 1 cut(s) 676
BseBI CCWGG 2 cut(s) 585, 834
BseDI CCNNGG 3 cut(s) 85, 873, 956
BseGI GGATG 9 cut(s) 31, 51, 84, 319, 382, 635, 1000, 1010, 1165
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 702, 728
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 1 cut(s) 476
BseSI GKGCMC 3 cut(s) 583, 871, 1191
BseXI GCAGC 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 407
Bsh1236I CGCG 2 cut(s) 469, 958
Bsh1285I CGRYCG 1 cut(s) 1143
BshFI GGCC 2 cut(s) 83, 815
BshNI GGYRCC 1 cut(s) 580
BsiEI CGRYCG 1 cut(s) 1143
BsiHKAI GWGCWC 1 cut(s) 871
BsiHKCI CYCGRG 1 cut(s) 911
BsiSI CCGG 1 cut(s) 651
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 576
BsmAI GTCTC 2 cut(s) 134, 458
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 2 cut(s) 83, 815
BsoBI CYCGRG 1 cut(s) 911
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 583, 871, 1191
Bsp143I GATC 6 cut(s) 490, 768, 903, 975, 1082, 1140
BspACI CCGC 2 cut(s) 956, 958
BspANI GGCC 2 cut(s) 83, 815
BspCNI CTCAG 2 cut(s) 703, 729
BspFNI CGCG 2 cut(s) 469, 958
BspLI GGNNCC 2 cut(s) 582, 814
BspPI GGATC 3 cut(s) 485, 776, 1090
BspT104I TTCGAA 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 580
BsrI ACTGG 1 cut(s) 676
BssECI CCNNGG 3 cut(s) 85, 873, 956
BssMI GATC 6 cut(s) 490, 768, 903, 975, 1082, 1140
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 2 cut(s) 85, 873
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 2 cut(s) 585, 834
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 1 cut(s) 677
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 12, 32
BstDEI CTNAG 2 cut(s) 711, 737
BstDSI CCRYGG 1 cut(s) 956
BstF5I GGATG 9 cut(s) 31, 51, 84, 319, 382, 635, 1000, 1010, 1165
BstFNI CGCG 2 cut(s) 469, 958
BstKTI GATC 6 cut(s) 493, 771, 906, 978, 1085, 1143
BstMAI GTCTC 2 cut(s) 134, 458
BstMBI GATC 6 cut(s) 490, 768, 903, 975, 1082, 1140
BstMCI CGRYCG 1 cut(s) 1143
BstMWI GCNNNNNNNGC 4 cut(s) 89, 707, 866, 955
BstNI CCWGG 2 cut(s) 585, 834
BstNSI RCATGY 2 cut(s) 181, 659
BstSCI CCNGG 3 cut(s) 583, 649, 832
BstSLI GKGCMC 3 cut(s) 583, 871, 1191
BstUI CGCG 2 cut(s) 469, 958
BstV1I GCAGC 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 490, 903
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 2 cut(s) 490, 903
BsuRI GGCC 2 cut(s) 83, 815
BtgI CCRYGG 1 cut(s) 956
BtsCI GGATG 9 cut(s) 31, 51, 84, 319, 382, 635, 1000, 1010, 1165
BtsIMutI CAGTG 2 cut(s) 315, 683
Cac8I GCNNGC 2 cut(s) 12, 32
Cfr13I GGNCC 5 cut(s) 82, 567, 621, 813, 930
Cfr42I CCGCGG 1 cut(s) 959
CseI GACGC 1 cut(s) 475
CsiI ACCWGGT 1 cut(s) 832
Csp6I GTAC 3 cut(s) 119, 734, 1011
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 6 cut(s) 178, 485, 656, 765, 817, 927
CviQI GTAC 3 cut(s) 119, 734, 1011
DdeI CTNAG 2 cut(s) 711, 737
DpnI GATC 6 cut(s) 492, 770, 905, 977, 1084, 1142
DpnII GATC 6 cut(s) 490, 768, 903, 975, 1082, 1140
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
Eco130I CCWWGG 2 cut(s) 85, 873
Eco47I GGWCC 3 cut(s) 567, 621, 930
Eco57I CTGAAG 3 cut(s) 257, 291, 768
Eco88I CYCGRG 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 583, 832
EcoT14I CCWWGG 2 cut(s) 85, 873
ErhI CCWWGG 2 cut(s) 85, 873
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 6 cut(s) 181, 488, 659, 768, 820, 930
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FaqI GGGAC 1 cut(s) 424
FatI CATG 6 cut(s) 177, 484, 655, 764, 816, 926
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 9 cut(s) 38, 58, 91, 326, 389, 642, 1007, 1017, 1172
Fsp4HI GCNGC 1 cut(s) 350
FspBI CTAG 5 cut(s) 302, 368, 576, 731, 1211
GluI GCNGC 1 cut(s) 350
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 2 cut(s) 83, 815
HapII CCGG 1 cut(s) 651
HgaI GACGC 1 cut(s) 475
Hin1II CATG 6 cut(s) 181, 488, 659, 768, 820, 930
HinfI GANTC 6 cut(s) 19, 126, 719, 761, 776, 1071
HpaII CCGG 1 cut(s) 651
HphI GGTGA 2 cut(s) 296, 905
Hpy166II GTNNAC 4 cut(s) 231, 388, 775, 869
Hpy188I TCNGA 4 cut(s) 237, 456, 625, 724
Hpy188III TCNNGA 7 cut(s) 23, 37, 368, 661, 780, 913, 1075
Hpy8I GTNNAC 4 cut(s) 231, 388, 775, 869
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 7 cut(s) 145, 241, 504, 882, 995, 1030, 1124
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 146, 1217
HpyCH4V TGCA 4 cut(s) 14, 728, 869, 1163
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 707, 866, 955
HpyF3I CTNAG 2 cut(s) 711, 737
HpySE526I ACGT 2 cut(s) 146, 1217
Hsp92II CATG 6 cut(s) 181, 488, 659, 768, 820, 930
KspI CCGCGG 1 cut(s) 959
Kzo9I GATC 6 cut(s) 490, 768, 903, 975, 1082, 1140
LmnI GCTCC 5 cut(s) 39, 89, 404, 782, 1049
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 4 cut(s) 715, 794, 1150, 1183
MabI ACCWGGT 1 cut(s) 832
MaeI CTAG 5 cut(s) 302, 368, 576, 731, 1211
MaeII ACGT 2 cut(s) 146, 1217
MaeIII GTNAC 3 cut(s) 379, 671, 742
MalI GATC 6 cut(s) 492, 770, 905, 977, 1084, 1142
MboI GATC 6 cut(s) 490, 768, 903, 975, 1082, 1140
MboII GAAGA 9 cut(s) 16, 65, 68, 443, 483, 500, 694, 706, 913
MflI RGATCY 2 cut(s) 490, 903
MhlI GDGCHC 3 cut(s) 583, 871, 1191
MluCI AATT 5 cut(s) 206, 428, 823, 838, 970
MlyI GAGTC 3 cut(s) 13, 770, 770
MmeI TCCRAC 2 cut(s) 198, 972
MnlI CCTC 6 cut(s) 43, 375, 454, 518, 558, 1150
MseI TTAA 4 cut(s) 318, 962, 1100, 1119
MspA1I CMGCKG 2 cut(s) 710, 958
MspI CCGG 1 cut(s) 651
MspR9I CCNGG 3 cut(s) 585, 651, 834
MvaI CCWGG 2 cut(s) 585, 834
MvnI CGCG 2 cut(s) 469, 958
MwoI GCNNNNNNNGC 4 cut(s) 89, 707, 866, 955
NciI CCSGG 1 cut(s) 651
NdeII GATC 6 cut(s) 490, 768, 903, 975, 1082, 1140
NlaIII CATG 6 cut(s) 181, 488, 659, 768, 820, 930
NlaIV GGNNCC 2 cut(s) 582, 814
NmuCI GTSAC 2 cut(s) 379, 742
NspI RCATGY 2 cut(s) 181, 659
NspV TTCGAA 1 cut(s) 110
PciI ACATGT 2 cut(s) 177, 655
PfeI GAWTC 3 cut(s) 126, 719, 1071
PkrI GCNGC 1 cut(s) 351
Ple19I CGATCG 1 cut(s) 1143
PleI GAGTC 3 cut(s) 13, 769, 770
PpsI GAGTC 3 cut(s) 13, 769, 770
PscI ACATGT 2 cut(s) 177, 655
Psp1406I AACGTT 1 cut(s) 1217
Psp6I CCWGG 2 cut(s) 583, 832
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 583, 832
PspN4I GGNNCC 2 cut(s) 582, 814
PspPI GGNCC 5 cut(s) 82, 567, 621, 813, 930
PsuI RGATCY 2 cut(s) 490, 903
PvuI CGATCG 1 cut(s) 1143
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 3 cut(s) 120, 735, 1012
RsaNI GTAC 3 cut(s) 119, 734, 1011
SacII CCGCGG 1 cut(s) 959
SaqAI TTAA 4 cut(s) 318, 962, 1100, 1119
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 6 cut(s) 490, 768, 903, 975, 1082, 1140
Sau96I GGNCC 5 cut(s) 82, 567, 621, 813, 930
ScaI AGTACT 1 cut(s) 735
SchI GAGTC 3 cut(s) 13, 770, 770
ScrFI CCNGG 3 cut(s) 585, 651, 834
SduI GDGCHC 3 cut(s) 583, 871, 1191
SexAI ACCWGGT 1 cut(s) 832
SfaNI GCATC 4 cut(s) 715, 794, 1150, 1183
Sfr303I CCGCGG 1 cut(s) 959
SfuI TTCGAA 1 cut(s) 110
SgrBI CCGCGG 1 cut(s) 959
SinI GGWCC 3 cut(s) 567, 621, 930
SpeI ACTAGT 1 cut(s) 730
Sse9I AATT 5 cut(s) 206, 428, 823, 838, 970
SsiI CCGC 2 cut(s) 956, 958
SspMI CTAG 5 cut(s) 302, 368, 576, 731, 1211
StyD4I CCNGG 3 cut(s) 583, 649, 832
StyI CCWWGG 2 cut(s) 85, 873
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 2 cut(s) 149, 1220
TaqI TCGA 6 cut(s) 66, 97, 110, 294, 324, 392
TasI AATT 5 cut(s) 206, 428, 823, 838, 970
TatI WGTACW 1 cut(s) 733
TfiI GAWTC 3 cut(s) 126, 719, 1071
Tru1I TTAA 4 cut(s) 318, 962, 1100, 1119
Tru9I TTAA 4 cut(s) 318, 962, 1100, 1119
TscAI CASTG 2 cut(s) 315, 683
TseFI GTSAC 2 cut(s) 379, 742
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 2 cut(s) 379, 742
TspDTI ATGAA 6 cut(s) 17, 129, 501, 707, 836, 1143
TspRI CASTG 2 cut(s) 315, 683
VneI GTGCAC 1 cut(s) 867
VpaK11BI GGWCC 3 cut(s) 567, 621, 930
XapI RAATTY 2 cut(s) 428, 970
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 2 cut(s) 181, 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 762
XmiI GTMKAC 1 cut(s) 774
XspI CTAG 5 cut(s) 302, 368, 576, 731, 1211
ZrmI AGTACT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.