FvH4_3g13401

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013588
Physical Location & Seq
Forward (+)
8007440 .. 8008519
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13401.t1

Sequence Viewer

Length: 762 bp
ATGTTGACGTCAAGTTCAAGATTGAGATTCAATGGCACAGTCTCTGGCTTTCTGGCCTTCAGGAAGGTGCCTCAGTTTAGTGAGTTTGTGTGTATTTGTGATTCTATTGAGATCCAGGGAAGAGAAGGATCAATGTTCGAAAAAGTTGGAGATTGGGTTGAGAAATTTAATGGTGAAGACTTCGAGTTCTGGAAGGGGAAGATAGAAGACTACCTATGTGTAACTGGTCTTGAACGTCCTCTTTCTGGAGAAAAACCAGAAAGTATGGATGATGCAGAATGGAGAGTGCTCGATAGAATGGCCCTAAGAACCATCCGTTCTACATTGTCAAAGAGCATTGCTTCCGAAACAGCCAAAGAGAACACCGCGGCTGGCCTTATGGCCACTCTTACTGACTTGTATGAGCTGAAACCTACGGTGATCAATCAGGTCCATCTGCTGCGACAGTTATTCAAGTTGAAGATGGCAGAAGGTGCTTCTGCATTTAAGCATCTGGGCAAGTTCAACACCATTATACATCAACTGTCCTCGATAAACATTGAGTTCGAAGAGGAAATAAGGGCTTTGATGGTTTTGTGTTCTTTGCCAGACAGTTGGAATGTTTTTGTAACTGTTGTGACTCTCTCCGCAGGAAAGAAGAAGCTCAAGTATGATGATGTGAGGGGTTTGGTTTTGGCTGAAGAGAGTCGCAGGAGGTATTCAAGTAAATTCTCAGGTATTACTAATACCAAAAACCTTGGTTTTAAGGGAAAGAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

254

Amino Acids

28.66

Weight (kDa)

8.8

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 84 - 235 6.7e-22 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 1 cut(s) 368
AciI CCGC 3 cut(s) 366, 368, 627
AclWI GGATC 2 cut(s) 106, 136
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 2 cut(s) 164, 707
AcuI CTGAAG 2 cut(s) 43, 699
AcyI GRCGYC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 7 cut(s) 18, 31, 233, 454, 460, 505, 702
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 406, 643
AluI AGCT 2 cut(s) 406, 643
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 106, 136
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 4 cut(s) 54, 300, 373, 381
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 2 cut(s) 164, 707
AspS9I GGNCC 2 cut(s) 301, 430
AsuHPI GGTGA 2 cut(s) 185, 430
AsuII TTCGAA 2 cut(s) 138, 546
AvaII GGWCC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 67
BbsI GAAGAC 2 cut(s) 183, 213
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 426
BccI CCATC 4 cut(s) 320, 441, 457, 562
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 2 cut(s) 369, 440
BlsI GCNGC 2 cut(s) 370, 441
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 301, 430
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 262, 499
BpiI GAAGAC 2 cut(s) 183, 213
BpmI CTGGAG 1 cut(s) 267
Bpu14I TTCGAA 2 cut(s) 138, 546
BpuEI CTTGAG 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 115, 366, 736
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 115, 366, 736
BseGI GGATG 2 cut(s) 274, 312
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 86, 726
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 4 cut(s) 56, 302, 375, 383
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 4 cut(s) 56, 302, 375, 383
Bsp119I TTCGAA 2 cut(s) 138, 546
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 111, 128, 420
BspACI CCGC 3 cut(s) 366, 368, 627
BspANI GGCC 4 cut(s) 56, 302, 375, 383
BspCNI CTCAG 2 cut(s) 85, 725
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 2 cut(s) 106, 136
BspT104I TTCGAA 2 cut(s) 138, 546
BspT107I GGYRCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 115, 366, 736
BssMI GATC 3 cut(s) 111, 128, 420
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 736
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 6 cut(s) 40, 418, 447, 525, 593, 613
Bst6I CTCTTC 3 cut(s) 115, 543, 675
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 473
BstBI TTCGAA 2 cut(s) 138, 546
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 72, 305, 712
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 274, 312
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 3 cut(s) 114, 131, 423
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 111, 128, 420
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 426
BstV2I GAAGAC 2 cut(s) 183, 213
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 594
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 4 cut(s) 56, 302, 375, 383
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 274, 312
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 301, 430
Cfr42I CCGCGG 1 cut(s) 369
DdeI CTNAG 3 cut(s) 72, 305, 712
DpnI GATC 3 cut(s) 113, 130, 422
DpnII GATC 3 cut(s) 111, 128, 420
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 3 cut(s) 115, 543, 675
EarI CTCTTC 3 cut(s) 115, 543, 675
Eco130I CCWWGG 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 2 cut(s) 43, 699
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 736
FaiI YATR 6 cut(s) 217, 266, 380, 402, 515, 651
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 369, 440
FokI GGATG 2 cut(s) 281, 299
Fsp4HI GCNGC 2 cut(s) 369, 440
GluI GCNGC 2 cut(s) 369, 440
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 4 cut(s) 56, 302, 375, 383
Hin1I GRCGYC 1 cut(s) 8
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 27, 101, 619, 685
HphI GGTGA 2 cut(s) 185, 430
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 5 cut(s) 18, 61, 190, 230, 246
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 5 cut(s) 58, 67, 119, 187, 464
HpyCH4III ACNGT 6 cut(s) 40, 418, 447, 525, 593, 613
HpyCH4IV ACGT 2 cut(s) 8, 235
HpyCH4V TGCA 2 cut(s) 275, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 3 cut(s) 72, 305, 712
HpySE526I ACGT 2 cut(s) 8, 235
Hsp92I GRCGYC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 420
KspI CCGCGG 1 cut(s) 369
Kzo9I GATC 3 cut(s) 111, 128, 420
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 2 cut(s) 262, 499
MaeII ACGT 2 cut(s) 8, 235
MaeIII GTNAC 3 cut(s) 220, 607, 616
MalI GATC 3 cut(s) 113, 130, 422
MboI GATC 3 cut(s) 111, 128, 420
MboII GAAGA 8 cut(s) 132, 188, 211, 218, 472, 560, 649, 692
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 164, 707
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 613, 694
MmeI TCCRAC 2 cut(s) 127, 575
MnlI CCTC 7 cut(s) 81, 249, 538, 544, 654, 687, 747
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
MseI TTAA 3 cut(s) 168, 486, 744
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 473
NdeII GATC 3 cut(s) 111, 128, 420
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 616
NspV TTCGAA 2 cut(s) 138, 546
PfeI GAWTC 2 cut(s) 27, 101
PkrI GCNGC 2 cut(s) 370, 441
PleI GAGTC 2 cut(s) 613, 693
PpsI GAGTC 2 cut(s) 613, 693
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 2 cut(s) 301, 430
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 111
SacII CCGCGG 1 cut(s) 369
SaqAI TTAA 3 cut(s) 168, 486, 744
SatI GCNGC 2 cut(s) 369, 440
Sau3AI GATC 3 cut(s) 111, 128, 420
Sau96I GGNCC 2 cut(s) 301, 430
SchI GAGTC 2 cut(s) 613, 694
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 2 cut(s) 262, 499
Sfr303I CCGCGG 1 cut(s) 369
SfuI TTCGAA 2 cut(s) 138, 546
SgrBI CCGCGG 1 cut(s) 369
SinI GGWCC 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 2 cut(s) 164, 707
SsiI CCGC 3 cut(s) 366, 368, 627
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 6 cut(s) 40, 418, 447, 525, 593, 613
TaiI ACGT 2 cut(s) 11, 238
TaqI TCGA 5 cut(s) 138, 183, 291, 530, 546
TasI AATT 2 cut(s) 164, 707
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 2 cut(s) 27, 101
Tru1I TTAA 3 cut(s) 168, 486, 744
Tru9I TTAA 3 cut(s) 168, 486, 744
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 616
TspGWI ACGGA 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 2 cut(s) 164, 707
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.