Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013588

Physical Location & Seq

Genomic Coordinates Forward (+)

31311353 .. 31312507

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36542.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCGGGGATTGAAGACGTCGAGAAAAGGGTTGACAAGTTTGATGGGCATGATTTTGTTATGTGGAGGTCTCAGATAACTGACTATCTAAATGTCAAGAAGTTGTCCAAGCCTTTGCTTGGAGTTAAGCCACAGGGCATGAAAAATGTGGATTGGGAGGAGCTTGACACTCAAGCTTTAGGAGCTATTCGACTATCGCTATCAAATGAAGTTCGGCGCGATGTGATACATGAGAAAACTACTAAAGGGTTAATGGATACCCTCTCAGAGATCTTTGAGAAGCCAAGCGCAGTTGAGCAGGTGCACTTATTGAGGAAGTTGTTTTCAATGAAGATGGCCAAAGGTGGCTCTATGCGAAGACAACAAGCAGCGGTTTGTGATATTGTCGAACAATTGGCTACTGTGGATATCATAATTGGAGAACACCTCAAGGCGTTGGTGTTGCTGACCTCCATGCCAGATACTTGGGATGTTACTGTCAACTCTATTTGCAGTTCAGCTGGGAAGAATAAGTTGGTCTACAACGAAGTTCGGGATACCTTGTTGAGTGAGGAAACTAGGAGGAAGAAGAATGATGATGAAGAGTCGCCTGCGACTACATCTGCTTTGCTTGTAAGAGGAAGATCTAGTGTAAAGGAGGGTACGAATTGTGGTAGATCAAAGTCGAGGAGTTTTAGAGATCAAGATAGAGACAAAGATAAGGAGTGCTTTTACTGTCATGATTTTGGGCATATTAGGTATAATTGTCCAAAATTGAAGTCGAAGAGAGCTACTACTGCAATGGTAGCAAGTGAAGATGATGGAGAATATTATGGAGATGCGCTCATGGTCACATCATGTTTAGAGACGCCACATGATGAGTGGATTTTGGATACTGGTTGTTCTGAACACATGTGTCCCAATAGGGATTGGTTTTCTTCCTACAAGTCTGTGAAGGGAGGTCTAGTGAGGTCGGTTGGTGCACAAACCTACAAAGTTGCTGGTGTTGGAACAATCAAAATTAAGGTACATGATGGATCAGTGAGGAGTTTAGAGAATGTTCTCCATGTTCCTAAGTTGGATAGGAATCTGATATCTTTGGGAACTTTAGATTCGGAAGGCCACAAGATTGTTGGTCATGATGGAAATATGAAAGTTTTGAAGGGGCACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

385

Amino Acids

42.99

Weight (kDa)

7.61

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	47 - 191	2.1e-22	gag-polypeptide of LTR copia-type
Pol_BBD	PF22936	288 - 367	2.4e-29	Pol polyprotein, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09706 FvH4_1g28421 FvH4_1g29881 FvH4_3g13401 FvH4_3g18841 FvH4_3g18841 FvH4_3g36542 FvH4_6g48813
malus_domestica	MD06G1148500.v1.1
pyrus_communis	pycom06g13750 pycom06g13790
rosa_chinensis	RchiOBHm_Chr5g0031651 RchiOBHm_Chr5g0031681 RchiOBHm_Chr5g0031721
rosa_roxburghii	Rroxscaffold_1G00048590 Rroxscaffold_1G00048620 Rroxscaffold_5G00385110
rosa_wichuraiana	Rw5G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	5, 371
AclWI	GGATC	1 cut(s)	1024
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	2 cut(s)	18, 848
AfaI	GTAC	2 cut(s)	643, 1008
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	4 cut(s)	14, 327, 757, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	5 cut(s)	163, 176, 185, 500, 770
AluI	AGCT	5 cut(s)	163, 176, 185, 500, 770
Alw21I	GWGCWC	2 cut(s)	306, 964
Alw26I	GTCTC	3 cut(s)	75, 684, 839
Alw44I	GTGCAC	2 cut(s)	302, 960
AlwI	GGATC	1 cut(s)	1024
AoxI	GGCC	2 cut(s)	336, 1099
ApaLI	GTGCAC	2 cut(s)	302, 960
ApeKI	GCWGC	1 cut(s)	368
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
AspLEI	GCGC	3 cut(s)	219, 290, 823
BaeGI	GKGCMC	3 cut(s)	306, 964, 1149
BalI	TGGCCA	1 cut(s)	338
BbsI	GAAGAC	2 cut(s)	21, 364
Bbv12I	GWGCWC	2 cut(s)	306, 964
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	5 cut(s)	38, 328, 794, 1007, 1115
BciVI	GTATCC	3 cut(s)	250, 529, 865
BcoDI	GTCTC	3 cut(s)	75, 684, 839
BfaI	CTAG	3 cut(s)	558, 627, 944
BfuAI	ACCTGC	1 cut(s)	289
BfuI	GTATCC	3 cut(s)	250, 529, 865
BglII	AGATCT	2 cut(s)	270, 623
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmsI	GCATC	1 cut(s)	808
BpiI	GAAGAC	2 cut(s)	21, 364
BplI	GAGNNNNNCTC	4 cut(s)	411, 443, 807, 839
BpuEI	CTTGAG	2 cut(s)	156, 413
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaHI	GRCGYC	2 cut(s)	18, 848
BsaI	GGTCTC	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	880
Bse3DI	GCAATG	1 cut(s)	786
Bse8I	GATNNNNATC	1 cut(s)	1065
BseGI	GGATG	1 cut(s)	475
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	2 cut(s)	86, 279
BseNI	ACTGG	1 cut(s)	880
BseRI	GAGGAG	3 cut(s)	173, 682, 1039
BseSI	GKGCMC	3 cut(s)	306, 964, 1149
BseXI	GCAGC	1 cut(s)	380
BseYI	CCCAGC	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	338, 1101
BsiHKAI	GWGCWC	2 cut(s)	306, 964
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	3 cut(s)	75, 684, 839
BsmBI	CGTCTC	1 cut(s)	839
BsmFI	GGGAC	1 cut(s)	882
BsnI	GGCC	2 cut(s)	338, 1101
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	306, 964, 1149
Bsp143I	GATC	5 cut(s)	270, 623, 656, 679, 1016
BspACI	CCGC	2 cut(s)	5, 371
BspANI	GGCC	2 cut(s)	338, 1101
BspCNI	CTCAG	2 cut(s)	85, 278
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	2 cut(s)	718, 1117
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	1024
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	786
BsrI	ACTGG	1 cut(s)	880
BssMI	GATC	5 cut(s)	270, 623, 656, 679, 1016
BssNI	GRCGYC	2 cut(s)	18, 848
Bst4CI	ACNGT	3 cut(s)	403, 478, 716
Bst6I	CTCTTC	2 cut(s)	576, 758
BstACI	GRCGYC	2 cut(s)	18, 848
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	3 cut(s)	72, 265, 1053
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	3 cut(s)	219, 290, 823
BstKTI	GATC	5 cut(s)	273, 626, 659, 682, 1019
BstMAI	GTCTC	3 cut(s)	75, 684, 839
BstMBI	GATC	5 cut(s)	270, 623, 656, 679, 1016
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 776, 785
BstNSI	RCATGY	1 cut(s)	895
BstSLI	GKGCMC	3 cut(s)	306, 964, 1149
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	2 cut(s)	21, 364
BstX2I	RGATCY	2 cut(s)	270, 623
BstXI	CCANNNNNNTGG	1 cut(s)	465
BstYI	RGATCY	2 cut(s)	270, 623
BsuI	GTATCC	3 cut(s)	250, 529, 865
BsuRI	GGCC	2 cut(s)	338, 1101
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	1026
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	591
CciI	TCATGA	2 cut(s)	718, 1117
CfoI	GCGC	3 cut(s)	219, 290, 823
CseI	GACGC	1 cut(s)	856
Csp6I	GTAC	2 cut(s)	642, 1007
CviQI	GTAC	2 cut(s)	642, 1007
DdeI	CTNAG	3 cut(s)	72, 265, 1053
DpnI	GATC	5 cut(s)	272, 625, 658, 681, 1018
DpnII	GATC	5 cut(s)	270, 623, 656, 679, 1016
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	576, 758
EarI	CTCTTC	2 cut(s)	576, 758
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	2 cut(s)	409, 1074
EcoRV	GATATC	2 cut(s)	409, 1074
Esp3I	CGTCTC	1 cut(s)	839
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FaqI	GGGAC	1 cut(s)	882
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	3 cut(s)	558, 627, 944
GlaI	GCGC	3 cut(s)	218, 289, 822
GluI	GCNGC	1 cut(s)	369
GsaI	CCCAGC	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	338, 1101
HgaI	GACGC	1 cut(s)	856
HhaI	GCGC	3 cut(s)	219, 290, 823
Hin1I	GRCGYC	2 cut(s)	18, 848
Hin6I	GCGC	3 cut(s)	217, 288, 821
HinP1I	GCGC	3 cut(s)	217, 288, 821
HincII	GTYRAC	2 cut(s)	34, 481
HindII	GTYRAC	2 cut(s)	34, 481
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	3 cut(s)	584, 1066, 1091
Hpy166II	GTNNAC	5 cut(s)	34, 304, 481, 520, 962
Hpy188I	TCNGA	5 cut(s)	75, 268, 886, 1071, 1096
Hpy188III	TCNNGA	6 cut(s)	22, 97, 533, 683, 719, 1118
Hpy8I	GTNNAC	5 cut(s)	34, 304, 481, 520, 962
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	928, 1091, 1135
HpyCH4III	ACNGT	3 cut(s)	403, 478, 716
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	304, 492, 779, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 776, 785
HpyF3I	CTNAG	3 cut(s)	72, 265, 1053
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	2 cut(s)	18, 848
HspAI	GCGC	3 cut(s)	217, 288, 821
Kzo9I	GATC	5 cut(s)	270, 623, 656, 679, 1016
LmnI	GCTCC	2 cut(s)	160, 182
LpnPI	CCDG	7 cut(s)	119, 284, 471, 486, 603, 861, 966
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	3 cut(s)	558, 627, 944
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	472, 829
MalI	GATC	5 cut(s)	272, 625, 658, 681, 1018
MboI	GATC	5 cut(s)	270, 623, 656, 679, 1016
MfeI	CAATTG	1 cut(s)	392
MflI	RGATCY	2 cut(s)	270, 623
MhlI	GDGCHC	3 cut(s)	306, 964, 1149
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	6 cut(s)	392, 414, 646, 742, 752, 999
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	2 cut(s)	967, 1038
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	3 cut(s)	126, 251, 1002
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	371, 500
MunI	CAATTG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	182, 776, 785
NdeII	GATC	5 cut(s)	270, 623, 656, 679, 1016
NmuCI	GTSAC	1 cut(s)	829
NspI	RCATGY	1 cut(s)	895
PagI	TCATGA	2 cut(s)	718, 1117
PaqCI	CACCTGC	1 cut(s)	289
PciI	ACATGT	1 cut(s)	891
PfeI	GAWTC	2 cut(s)	1066, 1091
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PscI	ACATGT	1 cut(s)	891
PspFI	CCCAGC	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	270, 623
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	643, 1008
RsaNI	GTAC	2 cut(s)	642, 1007
SaqAI	TTAA	3 cut(s)	126, 251, 1002
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	5 cut(s)	270, 623, 656, 679, 1016
SchI	GAGTC	1 cut(s)	593
SduI	GDGCHC	3 cut(s)	306, 964, 1149
SfaNI	GCATC	1 cut(s)	808
SmlI	CTYRAG	2 cut(s)	171, 428
SmoI	CTYRAG	2 cut(s)	171, 428
Sse9I	AATT	6 cut(s)	392, 414, 646, 742, 752, 999
SsiI	CCGC	2 cut(s)	5, 371
SspI	AATATT	1 cut(s)	809
SspMI	CTAG	3 cut(s)	558, 627, 944
TaaI	ACNGT	3 cut(s)	403, 478, 716
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	21, 190, 387, 665, 761
TasI	AATT	6 cut(s)	392, 414, 646, 742, 752, 999
TfiI	GAWTC	2 cut(s)	1066, 1091
Tru1I	TTAA	3 cut(s)	126, 251, 1002
Tru9I	TTAA	3 cut(s)	126, 251, 1002
TscAI	CASTG	1 cut(s)	1026
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	5 cut(s)	155, 222, 344, 594, 1145
TspRI	CASTG	1 cut(s)	1026
VneI	GTGCAC	2 cut(s)	302, 960
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	2 cut(s)	858, 1109
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	3 cut(s)	558, 627, 944
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.