RchiOBHm_Chr5g0031651

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013588
Physical Location & Seq
Forward (+)
25352966 .. 25354497
1532 bp
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UTR
Exon/CDS
Intron
PRQ31089

Sequence Viewer

Length: 639 bp
ATGAAATCCAGTGTTTCACTTTCCTTTCACACACACACTGTTTTTCATTTGATTTCTGCATTCTCAGATTGGACCCCTAACACTGACTCTCTACCGTCTCGCCGTCGAAGGTATTTTATAAAGAGAGTAAGAATGGAAGCTGCTGGGCATTGTGGGAAGTCAGGACTGATGAAAGGTGATAAAGCTTCCAAGAACAAATTTGGGGCAGCTAATCCCACTGAAGCAAACCAAGATGCTCCAGTTCAGAGCGTGGATAGTCCATTGGAGTCATGGATCTTTAGCACTGCAGCGTGCTATCATGTTACACAACAGCGGGAGATTTTGGAGAATTATACTAGTGGCAATTTTGGCAAAGTCCGCACAATAACTGGTGCTGCAATGGATGTTGTGGGTAAGGGTGATGTTCGCATCAAACTGTCCAGTAATGCCACATGGATTCTACGTGATGTGAAACACATTCCAGCTTGTGTGTGGAATTTAATTTCTGTGGGTCAGTTGGCTGAAAAAGGCTATAGGATGATACTCTCTAGTGGCAGCTGGAAGATTTCGACAGGAGATTTTGCTTTTACTGTCCCTGTCCCTCCCCCTGATCCAAATCAGCCTATGCACGGCAGTACTTACCTAGCACCTTCACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

212

Amino Acids

23.27

Weight (kDa)

9.54

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 91 - 171 9.2e-19 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 119
AciI CCGC 2 cut(s) 313, 358
AclWI GGATC 2 cut(s) 281, 584
AcsI RAATTY 2 cut(s) 197, 475
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 1 cut(s) 608
AhlI ACTAGT 1 cut(s) 335
AluBI AGCT 5 cut(s) 140, 185, 209, 464, 537
AluI AGCT 5 cut(s) 140, 185, 209, 464, 537
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 281, 584
ApeKI GCWGC 5 cut(s) 140, 206, 287, 374, 534
ApoI RAATTY 2 cut(s) 197, 475
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 188, 410, 624
AvaII GGWCC 1 cut(s) 72
BbvI GCAGC 5 cut(s) 127, 218, 299, 361, 546
BceAI ACGGC 2 cut(s) 87, 625
BcoDI GTCTC 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 4 cut(s) 336, 528, 623, 637
BfmI CTRYAG 2 cut(s) 285, 511
BisI GCNGC 5 cut(s) 141, 207, 288, 375, 535
BlsI GCNGC 5 cut(s) 142, 208, 289, 376, 536
BmcAI AGTACT 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 74
BmsI GCATC 2 cut(s) 223, 417
BpmI CTGGAG 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 594
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse1I ACTGG 4 cut(s) 9, 239, 373, 420
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 594
BseGI GGATG 2 cut(s) 388, 522
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 4 cut(s) 9, 239, 373, 420
BseXI GCAGC 5 cut(s) 127, 218, 299, 361, 546
BseYI CCCAGC 1 cut(s) 143
BslFI GGGAC 2 cut(s) 557, 563
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 1 cut(s) 102
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 557, 563
BsmI GAATGC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 273, 589
BspACI CCGC 2 cut(s) 313, 358
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 2 cut(s) 281, 584
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 4 cut(s) 9, 239, 373, 420
BssMI GATC 2 cut(s) 273, 589
Bst4CI ACNGT 4 cut(s) 40, 96, 417, 571
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 388, 522
BstKTI GATC 2 cut(s) 276, 592
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 2 cut(s) 273, 589
BstMWI GCNNNNNNNGC 2 cut(s) 348, 357
BstSFI CTRYAG 2 cut(s) 285, 511
BstV1I GCAGC 5 cut(s) 127, 218, 299, 361, 546
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtsCI GGATG 2 cut(s) 388, 522
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 5 cut(s) 16, 36, 81, 216, 282
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 615
CviAII CATG 3 cut(s) 270, 299, 432
CviJI RGCY 8 cut(s) 140, 185, 209, 464, 500, 510, 537, 601
CviKI_1 RGCY 8 cut(s) 140, 185, 209, 464, 500, 510, 537, 601
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 1 cut(s) 64
DpnI GATC 2 cut(s) 275, 591
DpnII GATC 2 cut(s) 273, 589
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 3 cut(s) 273, 302, 435
FaiI YATR 7 cut(s) 119, 271, 300, 333, 433, 513, 605
FaqI GGGAC 2 cut(s) 557, 563
FatI CATG 3 cut(s) 269, 298, 431
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 5 cut(s) 141, 207, 288, 375, 535
FokI GGATG 2 cut(s) 395, 529
Fsp4HI GCNGC 5 cut(s) 141, 207, 288, 375, 535
FspBI CTAG 4 cut(s) 336, 528, 623, 637
GluI GCNGC 5 cut(s) 141, 207, 288, 375, 535
GsaI CCCAGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 222
Hin1II CATG 3 cut(s) 273, 302, 435
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 3 cut(s) 86, 266, 436
HphI GGTGA 3 cut(s) 188, 410, 624
Hpy188I TCNGA 2 cut(s) 67, 246
Hpy188III TCNNGA 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 102, 639
HpyCH4III ACNGT 4 cut(s) 40, 96, 417, 571
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 4 cut(s) 59, 287, 377, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 357
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 3 cut(s) 273, 302, 435
Kzo9I GATC 2 cut(s) 273, 589
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 5 cut(s) 127, 218, 299, 361, 546
LweI GCATC 2 cut(s) 223, 417
MaeI CTAG 4 cut(s) 336, 528, 623, 637
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 275, 591
MboI GATC 2 cut(s) 273, 589
MboII GAAGA 1 cut(s) 553
MflI RGATCY 1 cut(s) 273
MluCI AATT 5 cut(s) 197, 328, 343, 475, 480
MlyI GAGTC 2 cut(s) 80, 275
MnlI CCTC 1 cut(s) 591
MseI TTAA 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 313, 537
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 348, 357
NdeII GATC 2 cut(s) 273, 589
NlaIII CATG 3 cut(s) 273, 302, 435
NlaIV GGNNCC 1 cut(s) 74
PctI GAATGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 5 cut(s) 142, 208, 289, 376, 536
PleI GAGTC 2 cut(s) 80, 274
PpsI GAGTC 2 cut(s) 80, 274
Ppu21I YACGTR 1 cut(s) 443
PsiI TTATAA 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 537
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 5 cut(s) 141, 207, 288, 375, 535
Sau3AI GATC 2 cut(s) 273, 589
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 2 cut(s) 80, 275
SfaNI GCATC 2 cut(s) 223, 417
SfcI CTRYAG 2 cut(s) 285, 511
SinI GGWCC 1 cut(s) 72
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 5 cut(s) 197, 328, 343, 475, 480
SsiI CCGC 2 cut(s) 313, 358
SspMI CTAG 4 cut(s) 336, 528, 623, 637
TaaI ACNGT 4 cut(s) 40, 96, 417, 571
TaiI ACGT 1 cut(s) 445
TaqI TCGA 2 cut(s) 106, 548
TasI AATT 5 cut(s) 197, 328, 343, 475, 480
TatI WGTACW 1 cut(s) 614
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TscAI CASTG 5 cut(s) 16, 43, 88, 223, 289
TseI GCWGC 5 cut(s) 140, 206, 287, 374, 534
TspDTI ATGAA 3 cut(s) 17, 35, 185
TspRI CASTG 5 cut(s) 16, 43, 88, 223, 289
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 197, 475
XcmI CCANNNNNNNNNTGG 2 cut(s) 267, 468
XspI CTAG 4 cut(s) 336, 528, 623, 637
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.