RchiOBHm_Chr5g0031681

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013588
Physical Location & Seq
Reverse (-)
25386624 .. 25388451
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31091

Sequence Viewer

Length: 498 bp
ATGGAAGCCGCAGGGCATTGTGGGAAGACAGGACCGATGAAGAAAGACGGTAAAGCTTCAAAGAACAACTTTGGGGCAACTAATCCCACTGAAGCAAACCAAGAAGCTCCAGTTCAGAGAGTGGATAGTCCATTGGAGTCCTGGATCTTTAGCACTGCAGCGTGCTATCATGTTACACAACAGCGGGAGATTCTGGAGAACTATACTAGTGGCAATTTTGGCAAGGTCTACCTAGCTACTGGTGATTCCATGGATGTTGTGGGCAAGGGTGATGTTCGCATCAAACTGTCCAGTAATGCGACATGGACTCTACGTGATGTGAAACATATTCCGGGTCATGTTTGGAATTTAATTTCTGTGGGTCAGTTGTCTGGAAGAGGCTATGGGATGACATTCTCTAATGACGGCTGGAAGGTTTCAACAGGAGATTTTGCTTTTACTGCCCCCCTTGATCCAAATCAGCCCAACCGCATCACTTACCTATCCGCTTCACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

165

Amino Acids

17.88

Weight (kDa)

7.79

Isoelectric Point (pI)

20.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 48 - 128 6.3e-19 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 4 cut(s) 9, 184, 469, 486
AclWI GGATC 2 cut(s) 152, 446
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 111
AgsI TTSAA 2 cut(s) 60, 420
AhlI ACTAGT 1 cut(s) 206
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 3 cut(s) 56, 107, 236
AluI AGCT 3 cut(s) 56, 107, 236
AlwI GGATC 2 cut(s) 152, 446
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 254, 281, 483
AvaII GGWCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 1 cut(s) 142
BcnI CCSGG 1 cut(s) 333
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 3 cut(s) 207, 233, 496
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 9, 159
BlsI GCNGC 2 cut(s) 10, 160
Bme1390I CCNGG 2 cut(s) 142, 333
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmrFI CCNGG 2 cut(s) 142, 333
BmsI GCATC 2 cut(s) 288, 480
BpiI GAAGAC 1 cut(s) 32
BpmI CTGGAG 2 cut(s) 93, 215
BpuMI CCSGG 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 249
Bse1I ACTGG 3 cut(s) 110, 244, 291
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 259, 393
BseJI GATNNNNATC 1 cut(s) 456
BseNI ACTGG 3 cut(s) 110, 244, 291
BseXI GCAGC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 332
Bsp143I GATC 2 cut(s) 144, 451
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 4 cut(s) 9, 184, 469, 486
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 2 cut(s) 152, 446
BsrI ACTGG 3 cut(s) 110, 244, 291
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 2 cut(s) 144, 451
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 50, 288
Bst6I CTCTTC 1 cut(s) 370
BstBAI YACGTR 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 259, 393
BstKTI GATC 2 cut(s) 147, 454
BstMBI GATC 2 cut(s) 144, 451
BstMWI GCNNNNNNNGC 2 cut(s) 219, 440
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 140, 331
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 259, 393
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 87, 153
Cac8I GCNNGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 32
CviAII CATG 4 cut(s) 170, 250, 303, 338
CviJI RGCY 7 cut(s) 8, 56, 107, 236, 381, 408, 463
CviKI_1 RGCY 7 cut(s) 8, 56, 107, 236, 381, 408, 463
DpnI GATC 2 cut(s) 146, 453
DpnII GATC 2 cut(s) 144, 451
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 4 cut(s) 173, 253, 306, 341
FaiI YATR 7 cut(s) 171, 204, 251, 304, 327, 339, 384
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 4 cut(s) 169, 249, 302, 337
FauI CCCGC 1 cut(s) 177
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 9, 159
FokI GGATG 2 cut(s) 266, 400
Fsp4HI GCNGC 2 cut(s) 9, 159
FspBI CTAG 3 cut(s) 207, 233, 496
GluI GCNGC 2 cut(s) 9, 159
GsuI CTGGAG 2 cut(s) 93, 215
HapII CCGG 1 cut(s) 332
Hin1II CATG 4 cut(s) 173, 253, 306, 341
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 4 cut(s) 137, 190, 245, 307
HpaII CCGG 1 cut(s) 332
HphI GGTGA 3 cut(s) 254, 281, 483
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 194, 372
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 2 cut(s) 50, 288
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 440
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 4 cut(s) 173, 253, 306, 341
Kzo9I GATC 2 cut(s) 144, 451
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 2 cut(s) 288, 480
MaeI CTAG 3 cut(s) 207, 233, 496
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 146, 453
MboI GATC 2 cut(s) 144, 451
MboII GAAGA 3 cut(s) 37, 52, 387
MflI RGATCY 1 cut(s) 144
MluCI AATT 3 cut(s) 214, 346, 351
MlyI GAGTC 2 cut(s) 146, 301
MnlI CCTC 1 cut(s) 371
MseI TTAA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 142, 333
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 219, 440
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 249
NdeII GATC 2 cut(s) 144, 451
NlaIII CATG 4 cut(s) 173, 253, 306, 341
PfeI GAWTC 2 cut(s) 190, 245
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 2 cut(s) 10, 160
PleI GAGTC 2 cut(s) 145, 301
PpsI GAGTC 2 cut(s) 145, 301
Ppu21I YACGTR 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 144
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 9, 159
Sau3AI GATC 2 cut(s) 144, 451
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 2 cut(s) 146, 301
ScrFI CCNGG 2 cut(s) 142, 333
SetI ASST 8 cut(s) 58, 109, 228, 234, 238, 316, 417, 483
SfaNI GCATC 2 cut(s) 288, 480
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 32
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 3 cut(s) 214, 346, 351
SsiI CCGC 4 cut(s) 9, 184, 469, 486
SspMI CTAG 3 cut(s) 207, 233, 496
StyD4I CCNGG 2 cut(s) 140, 331
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 50, 288
TaiI ACGT 1 cut(s) 316
TaqII GACCGA 1 cut(s) 49
TasI AATT 3 cut(s) 214, 346, 351
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 190, 245
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 94, 160
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 2 cut(s) 94, 160
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 256
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 3 cut(s) 207, 233, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.