Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013588

Physical Location & Seq

Genomic Coordinates Reverse (-)

68677035 .. 68678203

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAGAGGAGACAGCTTATGAATTGCAAACTCTCTGATCCTACTTTAACTGATTTACACCAAACAGGGCACTGTGGGAAGTCAGGACCAATGAAAGGTGATAAAGCTTCCAAGAACAAATTTGGGGCAGCTAATCCCACTGAAGCAAACCAAGATGCTCCAGTGCAGAGCGTGGATAGTCCATTGGAGTCATGGATCTTTAGCACTGCAGCGTGCTATCATGTTACACAACAGCGGGAGATTTTGGAGAATTATACTAGTGGCAATTTTGGCAAGGTCCGCACAATAACTGGTGCCACAATGGATGTTGTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

105

Amino Acids

11.42

Weight (kDa)

6.81

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09706 FvH4_1g28421 FvH4_1g29881 FvH4_3g13401 FvH4_3g18841 FvH4_3g18841 FvH4_3g36542 FvH4_6g48813
malus_domestica	MD06G1148500.v1.1
pyrus_communis	pycom06g13750 pycom06g13790
rosa_chinensis	RchiOBHm_Chr5g0031651 RchiOBHm_Chr5g0031681 RchiOBHm_Chr5g0031721
rosa_roxburghii	Rroxscaffold_1G00048590 Rroxscaffold_1G00048620 Rroxscaffold_5G00385110
rosa_wichuraiana	Rw5G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AciI	CCGC	2 cut(s)	235, 280
AclWI	GGATC	2 cut(s)	32, 203
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	95
AhlI	ACTAGT	1 cut(s)	257
AluBI	AGCT	3 cut(s)	16, 107, 131
AluI	AGCT	3 cut(s)	16, 107, 131
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	32, 203
ApeKI	GCWGC	2 cut(s)	128, 209
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	86, 277
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	86, 277
BaeGI	GKGCMC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	140, 221
BcoDI	GTCTC	1 cut(s)	4
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	129, 210
BlsI	GCNGC	2 cut(s)	130, 211
Bme18I	GGWCC	2 cut(s)	86, 277
BmgT120I	GGNCC	2 cut(s)	86, 277
BmiI	GGNNCC	1 cut(s)	295
BmsI	GCATC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	161, 295
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	161, 295
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	140, 221
BsgI	GTGCAG	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	37, 195
BspACI	CCGC	2 cut(s)	235, 280
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	2 cut(s)	32, 203
BspT107I	GGYRCC	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	161, 295
BssMI	GATC	2 cut(s)	37, 195
Bst4CI	ACNGT	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	2 cut(s)	40, 198
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	2 cut(s)	37, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 279
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	140, 221
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	4 cut(s)	70, 138, 168, 204
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	86, 277
CviAII	CATG	2 cut(s)	192, 221
CviJI	RGCY	3 cut(s)	16, 107, 131
CviKI_1	RGCY	3 cut(s)	16, 107, 131
DpnI	GATC	2 cut(s)	39, 197
DpnII	GATC	2 cut(s)	37, 195
Eco47I	GGWCC	2 cut(s)	86, 277
Eco57I	CTGAAG	1 cut(s)	162
FaeI	CATG	2 cut(s)	195, 224
FaiI	YATR	4 cut(s)	20, 193, 222, 255
FatI	CATG	2 cut(s)	191, 220
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	129, 210
Fsp4HI	GCNGC	2 cut(s)	129, 210
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	2 cut(s)	129, 210
GsuI	CTGGAG	1 cut(s)	144
Hin1II	CATG	2 cut(s)	195, 224
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	1 cut(s)	188
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	27, 166, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 279
Hsp92II	CATG	2 cut(s)	195, 224
Kzo9I	GATC	2 cut(s)	37, 195
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	51, 69, 174, 276
Lsp1109I	GCAGC	2 cut(s)	140, 221
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	39, 197
MboI	GATC	2 cut(s)	37, 195
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	4 cut(s)	22, 119, 250, 265
MlyI	GAGTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	270, 279
NdeII	GATC	2 cut(s)	37, 195
NlaIII	CATG	2 cut(s)	195, 224
NlaIV	GGNNCC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	130, 211
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	86, 277
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	2 cut(s)	129, 210
Sau3AI	GATC	2 cut(s)	37, 195
Sau96I	GGNCC	2 cut(s)	86, 277
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	5 cut(s)	18, 100, 109, 133, 279
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	86, 277
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	4 cut(s)	22, 119, 250, 265
SsiI	CCGC	2 cut(s)	235, 280
SspMI	CTAG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	74
TasI	AATT	4 cut(s)	22, 119, 250, 265
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	4 cut(s)	77, 145, 168, 211
TseI	GCWGC	2 cut(s)	128, 209
TspDTI	ATGAA	2 cut(s)	35, 107
TspRI	CASTG	4 cut(s)	77, 145, 168, 211
VpaK11BI	GGWCC	2 cut(s)	86, 277
XapI	RAATTY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	189
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.